View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1374-INSERTION-5 (Length: 680)
Name: NF1374-INSERTION-5
Description: NF1374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1374-INSERTION-5 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 603; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 29 - 680
Target Start/End: Complemental strand, 28057826 - 28057175
Alignment:
| Q |
29 |
ttatctcaaagttgtataaaagacatgatcaccacgagtttgtgaaacgaaaaattgtgaaccaggctgatttctagctagttatattcaatattctttt |
128 |
Q |
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| T |
28057826 |
ttatctcaaagttgtataaaagacatgatcaccacgagtttgtgagacgaaaaattgtgaaccaggctgatttctagctagttatattcaatattctttt |
28057727 |
T |
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| Q |
129 |
acgaattttgatatctgcactgcttattttttagcattattcttgaatttcgatgaatgaatttactttttaaacaacaagtctcatcaagatatttatg |
228 |
Q |
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| T |
28057726 |
acgaattttgatatctgcactgcttattttttagcattattcttgaatttcgatgaatgaatttactttttaaacaacaagtctcatcaagatatttatg |
28057627 |
T |
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| Q |
229 |
aaaaatatgttctcagtgaatataatgaatatagggagaagatgtccaagtaataagttgcacctagacatccatctgtattaaacatttcttatgagct |
328 |
Q |
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| T |
28057626 |
aaaaatatgttctcattgaatataatgaatattgggagaagatgtccaagtaataagttgcacctagacatccatctgtattaaacatttcttatgagct |
28057527 |
T |
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| Q |
329 |
aactgatcaaactttttctttctttcatttcgaatgaaatggaagtggtgaatgagatgatcatgtcactcttcaagcaaatgcgcaaactagtatgagt |
428 |
Q |
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| T |
28057526 |
aactgatcaaactttttctttctttcatttcgaatgaaatggaagtggtgaatgagatgatcatgtcactcttcaagcaaatgcgcaaactagtatgagt |
28057427 |
T |
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| Q |
429 |
tttgcaacttttacaactatactccttgtttgaatatgttcgttattattcttaaggtttttaatcggtggattgaactcttcggattagttgatttttg |
528 |
Q |
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| T |
28057426 |
tttgcaacttttacaactatactccttgtttgaatatgttcgttattattcttaaggtttttaatcggtggattgaactcttcggattagttgattttta |
28057327 |
T |
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| Q |
529 |
gatcagatactaagttnnnnnnngattaagattaattaagtaaatatgatcaaaagattgaattaattaagtagatgttatctaaatttgttgtatgtgt |
628 |
Q |
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| T |
28057326 |
gatcagatactgagttaaaaaaagattaagattaattaagtaaatatgatcaaaagattgaattaattaagtagatgttatctaaatttgttgtatgtgt |
28057227 |
T |
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| Q |
629 |
catcatcaattaattttcaacatccatggtttacaccgttcatagttcatat |
680 |
Q |
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| T |
28057226 |
catcatcgattaattttcaacgtccatggtttacaccgttcatagttcatat |
28057175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 28064973 - 28064917
Alignment:
| Q |
38 |
agttgtataaaagacatgatcaccacgagtttgtgaaacgaaaaattgtgaaccagg |
94 |
Q |
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| T |
28064973 |
agttgtataacacacctgatcaccacaagtttgtgagacgaaaagttgtgaaccagg |
28064917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 347 - 406
Target Start/End: Complemental strand, 28064669 - 28064609
Alignment:
| Q |
347 |
tttctttcatttcgaatgaaa-tggaagtggtgaatgagatgatcatgtcactcttcaagc |
406 |
Q |
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| T |
28064669 |
tttctttcattttgaatgaaactaggagtggtgaatggggtgatcatgtcacacttcaagc |
28064609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 207 - 283
Target Start/End: Complemental strand, 28064813 - 28064737
Alignment:
| Q |
207 |
aagtctcatcaagatatttatgaaaaatatgttctcagtgaatataatgaatatagggagaagatgtccaagtaata |
283 |
Q |
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| T |
28064813 |
aagtctcatccagatatatatgaaggatatgttcccatggaatataatgaatatttggataagatgtctaggtaata |
28064737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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