View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13740_high_13 (Length: 233)
Name: NF13740_high_13
Description: NF13740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13740_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 7795625 - 7795850
Alignment:
| Q |
1 |
atggttaggcaactatatgtagacagtgaccatatgcattagattctgattccatgccaagacttatgactagtttacaaccgaggaaatttgaacttcg |
100 |
Q |
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| T |
7795625 |
atggttaggcaactatatgtagacagtgaccacatgcattagattctgattccatgccaagacttatgactagtttacaaccgaggaaatttgaacttcg |
7795724 |
T |
|
| Q |
101 |
tcctttgaaattacaaggctaagctcttaccaaggaactaacattttataaatagtaaacatgacatatttataagtagggggtgaaacaaaaaagagta |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7795725 |
tcctttgaaattacaaggctaagctcttaccacggaactaacattttataaatagtaaacatgacatatttataagtagggggtgaaacaaaaaagagta |
7795824 |
T |
|
| Q |
201 |
ttcacaatgacattgtctctgtgctg |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
7795825 |
ttcacaatgacattgtctctgtgctg |
7795850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 48186115 - 48186144
Alignment:
| Q |
89 |
atttgaacttcgtcctttgaaattacaagg |
118 |
Q |
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| T |
48186115 |
atttgaacttcgtcctttgaaattacaagg |
48186144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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