View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13740_high_4 (Length: 594)

Name: NF13740_high_4
Description: NF13740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13740_high_4
NF13740_high_4
[»] chr6 (34 HSPs)
chr6 (10-401)||(26890566-26890955)
chr6 (326-576)||(26890025-26890275)
chr6 (38-542)||(27713769-27714257)
chr6 (83-534)||(26853623-26854094)
chr6 (315-568)||(27702263-27702516)
chr6 (384-536)||(26966104-26966256)
chr6 (332-568)||(26627980-26628216)
chr6 (332-568)||(26733957-26734193)
chr6 (365-536)||(26651110-26651281)
chr6 (365-536)||(26757078-26757249)
chr6 (406-536)||(27422508-27422638)
chr6 (127-230)||(26631744-26631847)
chr6 (127-230)||(26737719-26737822)
chr6 (378-534)||(26828368-26828524)
chr6 (95-230)||(27422277-27422412)
chr6 (116-230)||(27651942-27652055)
chr6 (137-229)||(26966390-26966482)
chr6 (362-446)||(31289406-31289490)
chr6 (312-536)||(26631460-26631693)
chr6 (312-536)||(26737435-26737668)
chr6 (222-488)||(27652069-27652339)
chr6 (452-532)||(26640678-26640758)
chr6 (452-532)||(26746644-26746724)
chr6 (142-230)||(31289542-31289630)
chr6 (44-98)||(27651844-27651898)
chr6 (28-101)||(26641217-26641290)
chr6 (28-101)||(26747183-26747256)
chr6 (450-566)||(31291346-31291462)
chr6 (474-537)||(27652343-27652406)
chr6 (315-361)||(26828527-26828573)
chr6 (478-528)||(26964361-26964411)
chr6 (32-101)||(26828715-26828784)
chr6 (456-496)||(26807293-26807333)
chr6 (354-438)||(27586671-27586755)
[»] scaffold0349 (1 HSPs)
scaffold0349 (38-542)||(17687-18175)
[»] chr8 (1 HSPs)
chr8 (38-542)||(29269635-29270150)
[»] scaffold0003 (2 HSPs)
scaffold0003 (406-536)||(64725-64855)
scaffold0003 (95-230)||(64951-65086)
[»] chr4 (9 HSPs)
chr4 (222-412)||(18692271-18692462)
chr4 (354-550)||(5083071-5083269)
chr4 (27-109)||(18682705-18682787)
chr4 (59-109)||(18650319-18650369)
chr4 (60-109)||(18718539-18718588)
chr4 (312-363)||(18674282-18674333)
chr4 (31-75)||(18692037-18692081)
chr4 (507-551)||(18674446-18674490)
chr4 (354-422)||(18718903-18718971)
[»] chr2 (2 HSPs)
chr2 (270-342)||(17989856-17989928)
chr2 (53-109)||(946412-946469)
[»] scaffold0277 (1 HSPs)
scaffold0277 (455-497)||(829-871)


Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 10 - 401
Target Start/End: Complemental strand, 26890955 - 26890566
Alignment:
Q  10 acatcatcataccagaaagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890955 acattatcataccagaaagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg 26890856  T
Q  110 ttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgtt 209  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890855 tgttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgtt 26890756  T
Q  210 gttgctgtgacacaagttctgaccttcatctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacaca 309  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890755 gttgctgtgacacaagttctgaccttcatctggtt--ctctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacaca 26890658  T
Q  310 ttgattccaatttgtgtactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaacc 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26890657 ttgattccaatttgtgtactacgattgaaattctcataactcttcaaatgagctgcaaagcataccgttactcactgccctttagaacaacc 26890566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 326 - 576
Target Start/End: Complemental strand, 26890275 - 26890025
Alignment:
Q  326 tactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaac 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  26890275 tactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacggattctgtggtgcgaacaac 26890176  T
Q  426 cactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttag 525  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890175 ctctagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttag 26890076  T
Q  526 agaaaagttgcgcaaataaccaacaacaggttgaattcatcggcacttgat 576  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  26890075 agaaaagttgtgcaaataaccaacaacaggctgaattcatcggcacttgat 26890025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 38 - 542
Target Start/End: Original strand, 27713769 - 27714257
Alignment:
Q  38 tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct 137  Q
    |||| |||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||    
T  27713769 tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaattaatcatacatacatatgttgttgctgctacacaagttctgtct 27713868  T
Q  138 cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagttctgaccttca 237  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||| | ||||||||||||  ||||||||||             
T  27713869 cagaaaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttc--------- 27713959  T
Q  238 tctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatttgtgtactacgattga 337  Q
           ||||| ||  || || |||||||| || | |||||||  || |||||||||| ||  ||||||| | |||||||| |||||||||| ||||||    
T  27713960 -------tactccttctataagaattggtgaataccgcatcctctctcatgcttcctttcttgttgaacacgtagattccaaattgtgtactaagattga 27714052  T
Q  338 aattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatct 437  Q
    |||||||| | | || |||||||||||||||||||| | |||||| ||||||||| |||||||| || ||||||| | ||  ||||||| |||||| | |    
T  27714053 aattctcaaagcactccaactgagctgcaaagcatatcattactcgctgccctttcgaacaaccaacggattctgcgctgtaagcaacctctagacttgt 27714152  T
Q  438 cccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgcg 537  Q
    | ||||||| |  |||||||||||||||||||  | |||||||||||||||||||||||| || ||  ||||  ||||||||||||||||||||||||||    
T  27714153 cgcatgacaatgcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcg 27714252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 83 - 534
Target Start/End: Complemental strand, 26854094 - 26853623
Alignment:
Q  83 taaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataact 182  Q
    |||||| |||||||||||||||| |||| || ||||| ||||  |||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  26854094 taaaaggaaattaatcatacatatatgtgtttctgctcctacgcaagttctgtctcagaaaactgacttggcagaaaattgtttttacacaagaataact 26853995  T
Q  183 tattaatcacaagagccattcggtgttgttgctgtgacaca----------------------agttctgaccttcatctggtttactctttacatgagc 260  Q
    ||||||||||||||||||| | ||||||||||||  |||||                      ||||||||| |||||||| |||||||||| ||| ||     
T  26853994 tattaatcacaagagccatacagtgttgttgctgctacacaagttcggtctcggacacttccaagttctgactttcatctgatttactctttccataagg 26853895  T
Q  261 attggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatttgtgtactacgattgaaattctcataactcttcaactga 360  Q
     ||||||| ||||||||||||||||||||||||||  ||| ||||||  ||| |||||||||||||||||  |||||| |||||| |||||| ||||||     
T  26853894 gttggtgaatatcacatcctccttcgtgcttccttcattcttgaacatgttggttccaatttgtgtactaaaattgaatttctcaaaactctacaactgg 26853795  T
Q  361 gctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccag 460  Q
    ||||||||||||| | |||||||||||||||| ||||| || ||||||| ||||||| | |||||| ||||| ||||   |||||| |  ||||||||||    
T  26853794 gctgcaaagcatatcattactcactgccctttcgaacagccaacagattttgtggtgtgcgcaacccctagatatcttgaatgacaatgcaaatagccag 26853695  T
Q  461 atgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagtt 534  Q
    ||||| |||||| |  | ||||||||| || |||||| || || | |||  |||||||||||||||||||||||    
T  26853694 atgaccacagat-ggatactgacaatgcacggtcaaagaacaagt-aattcttagttttggttagagaaaagtt 26853623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 315 - 568
Target Start/End: Original strand, 27702263 - 27702516
Alignment:
Q  315 tccaatttgtgtactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtg 414  Q
    ||||| |||||||||| ||| |||||||||| | | || |||||||||||||||||||| | |||||||||| ||||| |||||||| || |||||||||    
T  27702263 tccaaattgtgtactaagatggaaattctcaaagcactccaactgagctgcaaagcatatcattactcactgtcctttcgaacaaccaacggattctgtg 27702362  T
Q  415 gtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgttta 514  Q
     ||  ||||||| |||||| | || ||||||| |  |||||||||||||||||||  | |||||||||||||||||||||||| || ||  ||||  |||    
T  27702363 ctgtaagcaacctctagacttgtcgcatgacaatgcaaatagccagatgactacatgtcgtttcctgacaatgtacagtcaaaaaacaagaaaatactta 27702462  T
Q  515 gttttggttagagaaaagttgcgcaaataaccaacaacaggttgaattcatcgg 568  Q
    ||||||||||||||||||||||| |||| ||  |||||||| |||| |||||||    
T  27702463 gttttggttagagaaaagttgcgtaaattacagacaacaggctgaaatcatcgg 27702516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 384 - 536
Target Start/End: Complemental strand, 26966256 - 26966104
Alignment:
Q  384 ctgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgac 483  Q
    ||||||||| |||||||| || ||||||||||||| ||||| | |||||||| || |||||||||  |||||||||||||||||||||| || |||||||    
T  26966256 ctgccctttcgaacaaccaacggattctgtggtgcaagcaatctctagacatgtcgcatgacagtgcaaatagccagatgactacagatggtgtcctgac 26966157  T
Q  484 aatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgc 536  Q
    |||||||||||||| || || |||| | |||||||||||| ||||||||||||    
T  26966156 aatgtacagtcaaagaacaagtaaaagcttagttttggtttgagaaaagttgc 26966104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 332 - 568
Target Start/End: Complemental strand, 26628216 - 26627980
Alignment:
Q  332 gattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactag 431  Q
    |||||||||||||| | | || |||||||| || || ||||| | ||||||||| ||| || ||||| || || |||| ||| |||| ||||||| ||||    
T  26628216 gattgaaattctcaaagcactccaactgagatgtaatgcatatcattactcacttcccattcgaacagccaacggattttgttgtgcaagcaacctctag 26628117  T
Q  432 acatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaa 531  Q
    ||||||  ||||||| |  | | ||||||||||||| |  | |||||||||||||||||||||||| || ||| ||||  ||||||||||||||||||||    
T  26628116 acatcttgcatgacaatgcagagagccagatgactaaatgtggtttcctgacaatgtacagtcaaagaacaaaaaaatacttagttttggttagagaaaa 26628017  T
Q  532 gttgcgcaaataaccaacaacaggttgaattcatcgg 568  Q
    |||||| |||| ||| || ||||| |||| |||||||    
T  26628016 gttgcgtaaattaccgacgacaggctgaaatcatcgg 26627980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 332 - 568
Target Start/End: Complemental strand, 26734193 - 26733957
Alignment:
Q  332 gattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactag 431  Q
    |||||||||||||| | | || |||||||| || || ||||| | ||||||||| ||| || ||||| || || |||| ||| |||| ||||||| ||||    
T  26734193 gattgaaattctcaaagcactccaactgagatgtaatgcatatcattactcacttcccattcgaacagccaacggattttgttgtgcaagcaacctctag 26734094  T
Q  432 acatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaa 531  Q
    ||||||  ||||||| |  | | ||||||||||||| |  | |||||||||||||||||||||||| || ||| ||||  ||||||||||||||||||||    
T  26734093 acatcttgcatgacaatgcagagagccagatgactaaatgtggtttcctgacaatgtacagtcaaagaacaaaaaaatacttagttttggttagagaaaa 26733994  T
Q  532 gttgcgcaaataaccaacaacaggttgaattcatcgg 568  Q
    |||||| |||| ||| || ||||| |||| |||||||    
T  26733993 gttgcgtaaattaccgacgacaggctgaaatcatcgg 26733957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 365 - 536
Target Start/End: Complemental strand, 26651281 - 26651110
Alignment:
Q  365 caaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatga 464  Q
    ||||||||| | |||||||||||||||| |||||||| ||||||||||||||||||| || | |||||||| || ||||||| |  | |||| ||| |||    
T  26651281 caaagcatagcattactcactgccctttcgaacaaccaacagattctgtggtgcgagaaatctctagacatatcgcatgacaatgcacatagacaggtga 26651182  T
Q  465 ctacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgc 536  Q
    |||||||| ||||||||||||||||||| |||| || || | |||   |||||||||||| |||||| ||||    
T  26651181 ctacagatggtttcctgacaatgtacagacaaagaacaagttaattcgtagttttggttaaagaaaacttgc 26651110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 365 - 536
Target Start/End: Complemental strand, 26757249 - 26757078
Alignment:
Q  365 caaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatga 464  Q
    ||||||||| | |||||||||||||||| |||||||| ||||||||||||||||||| || | |||||||| || ||||||| |  | |||| ||| |||    
T  26757249 caaagcatagcattactcactgccctttcgaacaaccaacagattctgtggtgcgagaaatctctagacatatcgcatgacaatgcacatagacaggtga 26757150  T
Q  465 ctacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgc 536  Q
    |||||||| ||||||||||||||||||| |||| || || | |||   |||||||||||| |||||| ||||    
T  26757149 ctacagatggtttcctgacaatgtacagacaaagaacaagttaattcgtagttttggttaaagaaaacttgc 26757078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 406 - 536
Target Start/End: Original strand, 27422508 - 27422638
Alignment:
Q  406 gattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaat 505  Q
    |||||| || ||||||||| | |||||||| || ||||||| |  |||||||||||||||||||||| ||||||||||||||||||| |||| || || |    
T  27422508 gattctatgctgcgagcaatctctagacatgtcgcatgacaatgcaaatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagt 27422607  T
Q  506 aaatgtttagttttggttagagaaaagttgc 536  Q
    ||||| |||||||| ||||||||||||||||    
T  27422608 aaatgcttagttttcgttagagaaaagttgc 27422638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 26631847 - 26631744
Alignment:
Q  127 aagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagt 226  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |  ||||||||| |  ||||||||    
T  26631847 aagttctgtctcagaaaacagatttgggagaaaagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgcagctacacaagt 26631748  T
Q  227 tctg 230  Q
    ||||    
T  26631747 tctg 26631744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 26737822 - 26737719
Alignment:
Q  127 aagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagt 226  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |  ||||||||| |  ||||||||    
T  26737822 aagttctgtctcagaaaacagatttgggagaaaagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgcagctacacaagt 26737723  T
Q  227 tctg 230  Q
    ||||    
T  26737722 tctg 26737719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 378 - 534
Target Start/End: Complemental strand, 26828524 - 26828368
Alignment:
Q  378 tactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagttt 477  Q
    |||||| |||||||| || ||||  || |||| |||||| ||||||||||||||||||| | ||||||| |   ||||||||||| ||||||||| |  |    
T  26828524 tactcattgccctttcgagcaacaaacggattttgtggtacgagcaaccactagacatcccgcatgacaatgcgaatagccagatcactacagatggact 26828425  T
Q  478 cctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagtt 534  Q
    |||||||||||||||||||| || ||  ||||| |||||||||| ||||||||||||    
T  26828424 cctgacaatgtacagtcaaaaaacaagaaaatgcttagttttggatagagaaaagtt 26828368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 95 - 230
Target Start/End: Original strand, 27422277 - 27422412
Alignment:
Q  95 aatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaa 194  Q
    |||||||||||||| | ||| |||||| ||| |||||||||  ||||||| ||||||||||||||| || ||||||| ||||||| ||||||||| ||||    
T  27422277 aatcatacatacatttgttgttgctgcgacacaagttctgttgcagaaaaatgatttggcagaaaactgcttttacacaagaataccttattaattacaa 27422376  T
Q  195 gagccattcggtgttgttgctgtgacacaagttctg 230  Q
    ||||||| | |||||||| |||  || |||||||||    
T  27422377 gagccatacagtgttgtttctgctactcaagttctg 27422412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 116 - 230
Target Start/End: Original strand, 27651942 - 27652055
Alignment:
Q  116 tgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgct 215  Q
    |||||||| | ||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||  || | |||||||||||    
T  27651942 tgctgctaaacaagttctgtctca-aaaactgatttggcagaaaagtgtttttacacatgaataacttattaatcacaaaagttatacagtgttgttgct 27652040  T
Q  216 gtgacacaagttctg 230  Q
    |  || |||||||||    
T  27652041 gctacgcaagttctg 27652055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 26966482 - 26966390
Alignment:
Q  137 tcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagttct 229  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||||||||| |||||||||| | || |||||||||  |||||||||||    
T  26966482 tcagaaaactgatttggcagcaaagtgtttttacacaagaataccttattaatctcaagagccatacagttttgttgctgctacacaagttct 26966390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 362 - 446
Target Start/End: Complemental strand, 31289490 - 31289406
Alignment:
Q  362 ctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgaca 446  Q
    |||||||||||| | |||||||||||||||| |||||||| || ||||||||| |||||||||||||||||||| || |||||||    
T  31289490 ctgcaaagcatagcattactcactgccctttcgaacaaccaacggattctgtgctgcgagcaaccactagacatgtcgcatgaca 31289406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 312 - 536
Target Start/End: Complemental strand, 26631693 - 26631460
Alignment:
Q  312 gattccaatttgtgtactacgattgaaattctcataactcttcaac---------tgagctgcaaagcataccgttactcactgccctttagaacaaccg 402  Q
    |||||||||||||||||||  ||||||||||||| |||||| ||||         |||||||| ||||||| | |||||||||||||||| ||||||       
T  26631693 gattccaatttgtgtactaatattgaaattctcaaaactctgcaaccagtataactgagctgcgaagcatagcattactcactgccctttggaacaagta 26631594  T
Q  403 a-cagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaa 501  Q
    | | ||||||||| ||||||||||| |||||||| |   | |||| |  || | ||||||||||||||||| | ||||||| |||||||| || || |      
T  26631593 aacggattctgtgctgcgagcaacctctagacatgttg-aggacaatgcaagtggccagatgactacagatggcttcctgaaaatgtacattccaagagc 26631495  T
Q  502 aaataaatgtttagttttggttagagaaaagttgc 536  Q
    || |||||| || ||||||||||||||||||||||    
T  26631494 aagtaaatgctttgttttggttagagaaaagttgc 26631460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 312 - 536
Target Start/End: Complemental strand, 26737668 - 26737435
Alignment:
Q  312 gattccaatttgtgtactacgattgaaattctcataactcttcaac---------tgagctgcaaagcataccgttactcactgccctttagaacaaccg 402  Q
    |||||||||||||||||||  ||||||||||||| |||||| ||||         |||||||| ||||||| | |||||||||||||||| ||||||       
T  26737668 gattccaatttgtgtactaatattgaaattctcaaaactctgcaaccagtataactgagctgcgaagcatagcattactcactgccctttggaacaagta 26737569  T
Q  403 a-cagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaa 501  Q
    | | ||||||||| ||||||||||| |||||||| |   | |||| |  || | ||||||||||||||||| | ||||||| |||||||| || || |      
T  26737568 aacggattctgtgctgcgagcaacctctagacatgttg-aggacaatgcaagtggccagatgactacagatggcttcctgaaaatgtacattccaagagc 26737470  T
Q  502 aaataaatgtttagttttggttagagaaaagttgc 536  Q
    || |||||| || ||||||||||||||||||||||    
T  26737469 aagtaaatgctttgttttggttagagaaaagttgc 26737435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 488
Target Start/End: Original strand, 27652069 - 27652339
Alignment:
Q  222 caagttctgaccttcatctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatt 321  Q
    |||||||||| ||||||||  ||| ||||||  || || || ||||| |||||||||||| |  |||||||   ||||| ||||||  | ||||||||||    
T  27652069 caagttctgatcttcatcttcttttctctttctataaggataggtgaatatcacatcctcttctgtgcttc---ttttcttgaacatgtggattccaatt 27652165  T
Q  322 tgtgtactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactca-------ctgccctttagaacaaccgacagattctgtg 414  Q
    ||||||||| |||||||||  | | | ||||  ||||||||||||||| ||  | ||| |||       ||||||||| |||||||| |  |||| ||||    
T  27652166 tgtgtactaagattgaaatcttaaaacctctcaaactgagctgcaaagaatgtcattattcattagtcactgccctttggaacaaccaatggattttgtg 27652265  T
Q  415 gtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgt 488  Q
    ||||||||||   |||||||| || ||||||| |  ||||||||||||||| | |||| |||||||||||||||    
T  27652266 gtgcgagcaatgtctagacatatcacatgacaatgcaaatagccagatgaccatagatggtttcctgacaatgt 27652339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 452 - 532
Target Start/End: Complemental strand, 26640758 - 26640678
Alignment:
Q  452 aatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaag 532  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||| ||  | |||||| |||||||||| ||||||||||    
T  26640758 aatagccagatcactacagatggtttcctgacaatgtacagtcaaagaactagtaaatgcttagttttggatagagaaaag 26640678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 452 - 532
Target Start/End: Complemental strand, 26746724 - 26746644
Alignment:
Q  452 aatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaag 532  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||| ||  | |||||| |||||||||| ||||||||||    
T  26746724 aatagccagatcactacagatggtttcctgacaatgtacagtcaaagaactagtaaatgcttagttttggatagagaaaag 26746644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 31289630 - 31289542
Alignment:
Q  142 aaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagttctg 230  Q
    |||||||  ||||||| ||||||||||||| ||||||| ||||||||||||||||||||| | |||||||| |||  ||||| ||||||    
T  31289630 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 31289542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 27651844 - 27651898
Alignment:
Q  44 atctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatc 98  Q
    ||||||||||||| ||||||||||||||||||||| || ||||||||||||||||    
T  27651844 atctgtcagtatcgcaatatgtacaaactcttgtattcgtaaaagcaaattaatc 27651898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 26641290 - 26641217
Alignment:
Q  28 gagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata 101  Q
    |||||||||||||||||||||||| ||||||| |||||| |||| |||||| || ||||| ||| |||||||||    
T  26641290 gagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaatcaatttaatcata 26641217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 26747256 - 26747183
Alignment:
Q  28 gagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata 101  Q
    |||||||||||||||||||||||| ||||||| |||||| |||| |||||| || ||||| ||| |||||||||    
T  26747256 gagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaatcaatttaatcata 26747183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 450 - 566
Target Start/End: Complemental strand, 31291462 - 31291346
Alignment:
Q  450 aaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgcgcaaataaccaac 549  Q
    ||||||||||||||| ||||||| |||||||| ||||  ||| || || || ||  ||||  |||||||| ||||||||||||||||| |||| ||| ||    
T  31291462 aaaatagccagatgattacagatggtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgcgtaaattaccgac 31291363  T
Q  550 aacaggttgaattcatc 566  Q
     ||||| ||||||||||    
T  31291362 tacaggctgaattcatc 31291346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 474 - 537
Target Start/End: Original strand, 27652343 - 27652406
Alignment:
Q  474 gtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgcg 537  Q
    |||||||||||||||| ||||||  || || |||||| ||||||||||||||||||||||||||    
T  27652343 gtttcctgacaatgtaaagtcaatgaacaagtaaatgcttagttttggttagagaaaagttgcg 27652406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 361
Target Start/End: Complemental strand, 26828573 - 26828527
Alignment:
Q  315 tccaatttgtgtactacgattgaaattctcataactcttcaactgag 361  Q
    |||||||||| ||||| |||||||||||| | |||||||||||||||    
T  26828573 tccaatttgtatactaagattgaaattctgaaaactcttcaactgag 26828527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 528
Target Start/End: Complemental strand, 26964411 - 26964361
Alignment:
Q  478 cctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagaga 528  Q
    ||||||||||||||| |||| ||||| ||||| | ||||||||||||||||    
T  26964411 cctgacaatgtacagacaaagaaaaagtaaatttgtagttttggttagaga 26964361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 26828784 - 26828715
Alignment:
Q  32 ttgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata 101  Q
    |||||| |||| |||| ||| ||||||| ||||||||||| |||||| || |||| |||| |||||||||    
T  26828784 ttgtgaggaactatctttcaatatcacagtatgtacaaacacttgtattcctaaaggcaatttaatcata 26828715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 496
Target Start/End: Complemental strand, 26807333 - 26807293
Alignment:
Q  456 gccagatgactacagatagtttcctgacaatgtacagtcaa 496  Q
    |||||| |||||||||| |||||||||||| ||||||||||    
T  26807333 gccagacgactacagatggtttcctgacaaagtacagtcaa 26807293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 438
Target Start/End: Original strand, 27586671 - 27586755
Alignment:
Q  354 caactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctc 438  Q
    |||||||  ||||||||||| | |||||||||||| |||  ||||| | ||||||||||||||  |||| |||  ||||||||||    
T  27586671 caactgaattgcaaagcatatcattactcactgccatttcaaacaagccacagattctgtggtttgagccacctatagacatctc 27586755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 188; Significance: 1e-101; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 38 - 542
Target Start/End: Complemental strand, 18175 - 17687
Alignment:
Q  38 tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct 137  Q
    |||| |||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||    
T  18175 tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaattaatcatacatacatatgttgttgctgctacacaagttctgtct 18076  T
Q  138 cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagttctgaccttca 237  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||| | ||||||||||||  ||||||||||             
T  18075 cagaaaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttc--------- 17985  T
Q  238 tctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatttgtgtactacgattga 337  Q
           ||||| ||  || || |||||||| || | |||||||  || |||||||||| ||  ||||||| | |||||||| |||||||||| ||||||    
T  17984 -------tactccttctataagaattggtgaataccgcatcctctctcatgcttcctttcttgttgaacacgtagattccaaattgtgtactaagattga 17892  T
Q  338 aattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatct 437  Q
    |||||||| | | || |||||||||||||||||||| | |||||| ||||||||| |||||||| || ||||||| | ||  ||||||| |||||| | |    
T  17891 aattctcaaagcactccaactgagctgcaaagcatatcattactcgctgccctttcgaacaaccaacggattctgcgctgtaagcaacctctagacttgt 17792  T
Q  438 cccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgcg 537  Q
    | ||||||| |  |||||||||||||||||||  | |||||||||||||||||||||||| || ||  ||||  ||||||||||||||||||||||||||    
T  17791 cgcatgacaatgcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcg 17692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 175; Significance: 6e-94; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 38 - 542
Target Start/End: Original strand, 29269635 - 29270150
Alignment:
Q  38 tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct 137  Q
    |||| |||| ||| |||||||||||| |||| ||||||||| | ||||||||||||||||||| ||||||| | ||| |||||||||| |||||||||||    
T  29269635 tgaaacatcagtcggtatcacaatatctacatactcttgtattattaaaagcaaattaatcatgcatacatatgttgttgctgctacacaagttctgtct 29269734  T
Q  138 cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagttctgaccttca 237  Q
    | ||||| |||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| | ||||||||||||  ||||||||||||  |||||    
T  29269735 ctgaaaagtgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagccatacagtgttgttgctgctacacaagttctg--cttca 29269832  T
Q  238 -------------tctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatttgt 324  Q
                 |||| ||||||| ||  || || |||||||| || | |||||||  || |||||||||| ||  ||||||| | |||||||| ||||    
T  29269833 gaaaattccaagttctgatttactccttctataagaattggtgaataccgcatcctctctcatgcttcctttcttattgaacacgtagattccaaattgt 29269932  T
Q  325 gtactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaa 424  Q
    |||||| ||| ||||||| || | | || |||||||||||||||||||| | |||||||||||||||| |||||||  || |||| |||| || ||||||    
T  29269933 gtactaagatggaaattcacaaagcactccaactgagctgcaaagcatatcattactcactgccctttcgaacaacaaacggattatgtgctgtgagcaa 29270032  T
Q  425 ccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggtta 524  Q
    || |||||| | || ||||||| |  |||||||||||||||||||  | |||||||||||||||||||||||| || ||  ||||  |||||||||||||    
T  29270033 cctctagacttgtcgcatgacaatgcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggtta 29270132  T
Q  525 gagaaaagttgcgcaaat 542  Q
    ||||||||||||| ||||    
T  29270133 gagaaaagttgcgtaaat 29270150  T

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Target: scaffold0003 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 406 - 536
Target Start/End: Complemental strand, 64855 - 64725
Alignment:
Q  406 gattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaat 505  Q
    |||||| || ||||||||| | |||||||| || ||||||| |  |||||||||||||||||||||| ||||||||||||||||||| |||| || || |    
T  64855 gattctatgctgcgagcaatctctagacatgtcgcatgacaatgcaaatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagt 64756  T
Q  506 aaatgtttagttttggttagagaaaagttgc 536  Q
    ||||| |||||||| ||||||||||||||||    
T  64755 aaatgcttagttttcgttagagaaaagttgc 64725  T

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Target: scaffold0003; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 95 - 230
Target Start/End: Complemental strand, 65086 - 64951
Alignment:
Q  95 aatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaa 194  Q
    |||||||||||||| | ||| |||||| ||| |||||||||  ||||||| ||||||||||||||| || ||||||| ||||||| ||||||||| ||||    
T  65086 aatcatacatacatttgttgttgctgcgacacaagttctgttgcagaaaaatgatttggcagaaaactgcttttacacaagaataccttattaattacaa 64987  T
Q  195 gagccattcggtgttgttgctgtgacacaagttctg 230  Q
    ||||||| | |||||||| |||  || |||||||||    
T  64986 gagccatacagtgttgtttctgctactcaagttctg 64951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 222 - 412
Target Start/End: Original strand, 18692271 - 18692462
Alignment:
Q  222 caagttctgaccttcatctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacacattg-attccaat 320  Q
    |||||||||  ||||||||| ||| ||||||  || || |||| ||| ||||||||||| || | |||||  ||| ||| |||||||| || |||| |||    
T  18692271 caagttctgttcttcatctgattttctctttctataaggattgatgaatatcacatcctgctccatgctttttttcttcttgaacacagtggattctaat 18692370  T
Q  321 ttgtgtactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctg 412  Q
    |||| ||||| |||||||||||||| |||||| |||||||| ||||||||||| |  ||||||||||||||| |||||||| || |||||||    
T  18692371 ttgtctactaagattgaaattctcaaaactctccaactgaggtgcaaagcatatcaatactcactgccctttcgaacaaccaacggattctg 18692462  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 354 - 550
Target Start/End: Complemental strand, 5083269 - 5083071
Alignment:
Q  354 caactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaa 453  Q
    |||||||||||||||||||| | ||||||||||||||||  ||||| | || ||||||||||   |||| ||| |||||||||||  |||||| |  |||    
T  5083269 caactgagctgcaaagcatatcattactcactgccctttcaaacaatccacggattctgtggattgagccacctctagacatctcgtatgacaatgcaaa 5083170  T
Q  454 tagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttt-tggtt-agagaaaagttgcgcaaataaccaaca 550  Q
     |||||||  ||||||||| |||| ||| ||||||||||| ||| || |||| |||| ||||||| | ||| |||||||||||||  |||| |||||||    
T  5083169 aagccagacaactacagatggttttctgtcaatgtacagtaaaagaagaaatgaatgcttagtttatagttaagagaaaagttgcaaaaattaccaaca 5083071  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 18682705 - 18682787
Alignment:
Q  27 agagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg 109  Q
    ||||||||||| ||||||||| || |||| | |||||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  18682705 agagattgtgacgaaccatctatcggtatgaaaatatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg 18682787  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 18650319 - 18650369
Alignment:
Q  59 aatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg 109  Q
    |||||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  18650319 aatatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg 18650369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 18718539 - 18718588
Alignment:
Q  60 atatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg 109  Q
    ||||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  18718539 atatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg 18718588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 363
Target Start/End: Original strand, 18674282 - 18674333
Alignment:
Q  312 gattccaatttgtgtactacgattgaaattctcataactcttcaactgagct 363  Q
    ||||||||||||| ||||| |||||||||||||| |||||| ||||||||||    
T  18674282 gattccaatttgtctactaagattgaaattctcaaaactctccaactgagct 18674333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 18692037 - 18692081
Alignment:
Q  31 attgtgatgaaccatctgtcagtatcacaatatgtacaaactctt 75  Q
    |||||||||||||||||||| |||| | |||||||||||||||||    
T  18692037 attgtgatgaaccatctgtcggtatgaaaatatgtacaaactctt 18692081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 551
Target Start/End: Original strand, 18674446 - 18674490
Alignment:
Q  507 aatgtttagttttggttagagaaaagttgcgcaaataaccaacaa 551  Q
    |||| |||||||||||||||||||||||| | |||| ||||||||    
T  18674446 aatgcttagttttggttagagaaaagttgtgtaaattaccaacaa 18674490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 422
Target Start/End: Original strand, 18718903 - 18718971
Alignment:
Q  354 caactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagc 422  Q
    |||||||| ||||||||||| |  |||||||||||| || |||||||| ||||| ||||  ||||||||    
T  18718903 caactgaggtgcaaagcatatcaatactcactgcccgttcgaacaaccaacagaatctgcagtgcgagc 18718971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 17989856 - 17989928
Alignment:
Q  270 tatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatttgtgtactacgattgaaattc 342  Q
    ||||||||||||||||||||||  ||| ||  ||||||||| |||||| |||||||||||| ||||| |||||    
T  17989856 tatcacatcctccttcgtgcttgttttcttattgaacacatggattcccatttgtgtactaagattggaattc 17989928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 946412 - 946469
Alignment:
Q  53 tatcacaatatgtacaaactcttgta-ctcttaaaagcaaattaatcatacatacatg 109  Q
    ||||| |||||||||||||||||| | |||||||||||||  |||||| |||||||||    
T  946412 tatcaaaatatgtacaaactcttgcatctcttaaaagcaatctaatcacacatacatg 946469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 497
Target Start/End: Original strand, 829 - 871
Alignment:
Q  455 agccagatgactacagatagtttcctgacaatgtacagtcaaa 497  Q
    ||||||| |||||||||| ||||||||||||||||| ||||||    
T  829 agccagacgactacagatggtttcctgacaatgtactgtcaaa 871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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