View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13740_high_6 (Length: 452)
Name: NF13740_high_6
Description: NF13740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13740_high_6 |
 | |
|
| [»] scaffold0118 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 4 - 436
Target Start/End: Original strand, 13715583 - 13716013
Alignment:
| Q |
4 |
cagagacgaaaatacaccctcttattcgtaactggtcattagttagaagcttatgatgagccaatctccaaacaaatgaaggcccgannnnnnnnnnnnn |
103 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
13715583 |
cagagaccaaaatacaccctcttattcgtaactggtcatcagttagaagcttttgatgagccaatctttaaacaaatgaaggcccgagtgtgtgtgtgtg |
13715682 |
T |
|
| Q |
104 |
nnnatgtggggggtggggacaaaggcatttcaaataaacttgcaccaactcaacttgattcgtattcagaaaatcataagctaacttgttggacaaatcc |
203 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13715683 |
t--atgtggggggtggggacaaaggcattccaaataaacttgcaccaactcaacttgattcgtattcagaaaatcataagctaacttgttagacaaatcc |
13715780 |
T |
|
| Q |
204 |
ccatccatagagtgaagccaatgcaaacagtcattttgaggttcaatgcaaagagtcgtattttgtatcagcaccgtcaaagtaggatatttacggctaa |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13715781 |
ccatccatagagtgaagccaatgcaaacagtcattttgaggttcaatgcaaagagtggtattttgtatcagcaccgtcaaagtaggatatttagggctaa |
13715880 |
T |
|
| Q |
304 |
tgtatgagggaatctgccattgttggtgcacaatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtaggaatgcttagagactgcaccaa |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13715881 |
tgtatgagggaatctgccattgttggtgcacgatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtaggaatgcttagagacttcaccaa |
13715980 |
T |
|
| Q |
404 |
tggctcaccgggccacatgtccttccaaaagag |
436 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
13715981 |
tggctcaccgggccacatgtgcttccaaaagag |
13716013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 254 - 436
Target Start/End: Original strand, 36099 - 36281
Alignment:
| Q |
254 |
aagagtcgtattttgtatcagcaccgtcaaagtaggatatttacggctaatgtatgagggaatctgccattgttggtgcacaatgtaatatgacaccttc |
353 |
Q |
| |
|
|||||| |||||||||||| | |||||||| |||||||||||| |||||||| | ||||||| ||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
36099 |
aagagtggtattttgtatctgaaccgtcaaggtaggatatttagaactaatgtaggtgggaatccgccattgatggtgcagaatgtaatctgacaccttc |
36198 |
T |
|
| Q |
354 |
atgttcagctaagcatgcaaatgagtaggaatgcttagagactgcaccaatggctcaccgggccacatgtccttccaaaagag |
436 |
Q |
| |
|
|||| ||||| |||||| ||||| | ||||||||| |||||||||||||| |||||||| |||| |||||||||||||||| |
|
|
| T |
36199 |
atgtccagctgagcatgaaaatgtgaaggaatgctgagagactgcaccaacggctcacccaaccacctgtccttccaaaagag |
36281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University