View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13740_high_7 (Length: 451)
Name: NF13740_high_7
Description: NF13740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13740_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 30274098 - 30273678
Alignment:
| Q |
18 |
ggttggggattggatggtaatgttatgttatatcttatcttataatttaatttatggattttttgagtttgtatttgaacatgttttggaatgtgtctgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30274098 |
ggttggggattggatggtaatgttatgttatatcttatcttataatttaatttatggattttttgagtttgtatttgaacatgttttggaatgtgtctgg |
30273999 |
T |
|
| Q |
118 |
attcaggttctgtttggatttcatcagaaatgaaagcattgaatgatgattgtgaacattttgagtgttttccacctggtcatttgtactctagcaaaga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30273998 |
attcaggttctgtttggatttcatcagaaatgaaagccttgaatgatgattgtgaacattttgagtgttttccacctggtcatttgtactctagcaaaga |
30273899 |
T |
|
| Q |
218 |
tggtggatttagaagatggtacaatcctccttggtactctgaggctattccatcagctccttatgatcctctagctttgaggcatgcctttgagaaggta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30273898 |
tggtggatttagaagatggtacaatcctccctggtactctgaggctattccatcagctccttatgatcctctagctttgaggcatgcctttgagaaggta |
30273799 |
T |
|
| Q |
318 |
tgattcataaaaatcatagcacataattggattgaaagttttagacttacggtgcattgttaacatgattgatcttgcgtcatgtcatatatgattttag |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30273798 |
tgattcataaaaatcatagcacataattggattgaaagttttagacttacggtgcatagttaacatgattgatcttgcgtcatgtcatatatgattttag |
30273699 |
T |
|
| Q |
418 |
tgaaaacattagtatatggtt |
438 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
30273698 |
tgaaaacattagtatatggtt |
30273678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 126 - 317
Target Start/End: Complemental strand, 25966820 - 25966626
Alignment:
| Q |
126 |
tctgtttggatttcatcagaaatgaaagcattgaatgatgattgtgaacattttgagtgttttccacctggtcatttgtactctagcaaagatggtggat |
225 |
Q |
| |
|
||||| |||||| |||||||| | |||| |||||||||| |||||||||||||| ||||||||||||||| |||||||| |||||||| | | | |
|
|
| T |
25966820 |
tctgtgtggattgcatcagaattaaaagggctgaatgatgaatgtgaacattttgaagtttttccacctggtcacttgtactcgagcaaagaccgggagt |
25966721 |
T |
|
| Q |
226 |
ttagaagatggtacaatcctccttggtactctgaggc---tattccatcagctccttatgatcctctagctttgaggcatgcctttgagaaggta |
317 |
Q |
| |
|
|| | ||||||||||||||||| |||| | ||||| ||||||| || | |||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
25966720 |
ttcgtagatggtacaatcctccgtggttcaacgaggctattattccaacaaccccttatgatcctctagttttgaggaatgcctttgagaaggta |
25966626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University