View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13740_low_10 (Length: 420)

Name: NF13740_low_10
Description: NF13740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13740_low_10
NF13740_low_10
[»] chr4 (1 HSPs)
chr4 (195-406)||(1688568-1688779)
[»] chr7 (2 HSPs)
chr7 (195-398)||(19052593-19052796)
chr7 (326-361)||(25717545-25717580)
[»] chr1 (1 HSPs)
chr1 (326-401)||(29684478-29684553)
[»] chr5 (1 HSPs)
chr5 (326-401)||(22913793-22913868)
[»] scaffold0075 (1 HSPs)
scaffold0075 (358-401)||(10303-10346)
[»] chr8 (2 HSPs)
chr8 (53-83)||(27015397-27015427)
chr8 (52-114)||(30338454-30338516)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 195 - 406
Target Start/End: Original strand, 1688568 - 1688779
Alignment:
Q  195 accccaatccatcaaacttagcccaatcttaatgaatatcaacatgcaagcttcaaatcttgacccttggaacaatttaaaccttatgcaagattaaaat 294  Q
    |||||||||||||||| ||||||||||  ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1688568 accccaatccatcaaagttagcccaattgtaatggaaatcaacatgcaagcttcaaatcttgatccttggaacaatttaaaccttatgcaagattaaaat 1688667  T
Q  295 tcttctttcctttcctcttttccctcctagatgaactcaaccacaagctcacaagttttgaattgttgccatcagattgtttagagagtagaaattaagt 394  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  1688668 tcttctttcctttcctcttttccctcctagctgaactcaaccacaagctcacaagttttgaattgttgccatcagattgtttagagagtggcaattaagt 1688767  T
Q  395 tgttgtgctgat 406  Q
    ||||||||||||    
T  1688768 tgttgtgctgat 1688779  T

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Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 195 - 398
Target Start/End: Original strand, 19052593 - 19052796
Alignment:
Q  195 accccaatccatcaaacttagcccaatcttaatgaatatcaacatgcaagcttcaaatcttgacccttggaacaatttaaaccttatgcaagattaaaat 294  Q
    |||||||||||||||||||||| |||| |||||| | |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  19052593 accccaatccatcaaacttagctcaattttaatggaaatcaacatgcaagcttcaaatcttgatccttcgaacaatttaaaccttatgcaagattaaaat 19052692  T
Q  295 tcttctttcctttcctcttttccctcctagatgaactcaaccacaagctcacaagttttgaattgttgccatcagattgtttagagagtagaaattaagt 394  Q
    |||||||||||||||| ||||||||| ||| || ||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||| ||||| ||    
T  19052693 tcttctttcctttccttttttccctcttagctggactcaaccacaagctcataagttttgaactgttgccatcagattgtttagaaagtagcaattaggt 19052792  T
Q  395 tgtt 398  Q
    ||||    
T  19052793 tgtt 19052796  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 361
Target Start/End: Original strand, 25717545 - 25717580
Alignment:
Q  326 tgaactcaaccacaagctcacaagttttgaattgtt 361  Q
    ||||||||||||||||||||||||||||||| ||||    
T  25717545 tgaactcaaccacaagctcacaagttttgaactgtt 25717580  T

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Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 326 - 401
Target Start/End: Original strand, 29684478 - 29684553
Alignment:
Q  326 tgaactcaaccacaagctcacaagttttgaattgttgccatcagattgtttagagagtagaaattaagttgttgtg 401  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  29684478 tgaactcaaccacaagctcacaagttttgaactgttgccatcagattgtttagaaagtagcaattaagttgttgtg 29684553  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 326 - 401
Target Start/End: Original strand, 22913793 - 22913868
Alignment:
Q  326 tgaactcaaccacaagctcacaagttttgaattgttgccatcagattgtttagagagtagaaattaagttgttgtg 401  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||| ||||||||    
T  22913793 tgaactcaaccacaagctcacaagttttgaactgttgccatcagattgtttagaaagtagcaattaaattgttgtg 22913868  T

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Target: scaffold0075 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 401
Target Start/End: Complemental strand, 10346 - 10303
Alignment:
Q  358 tgttgccatcagattgtttagagagtagaaattaagttgttgtg 401  Q
    |||||||||||||||||||||| ||||| |||||| ||||||||    
T  10346 tgttgccatcagattgtttagaaagtagcaattaaattgttgtg 10303  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 83
Target Start/End: Complemental strand, 27015427 - 27015397
Alignment:
Q  53 ttttgcccttatgggggtattttggtaaatt 83  Q
    |||||||||||||||||||||||||||||||    
T  27015427 ttttgcccttatgggggtattttggtaaatt 27015397  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 30338454 - 30338516
Alignment:
Q  52 tttttgcccttatgggggtattttggtaaattgataatttgttgtctttcccatatatatatg 114  Q
    ||||||||||||| |||||||||| || ||||| ||||| |  ||||||||| ||||||||||    
T  30338454 tttttgcccttataggggtattttcgtcaattggtaattggaagtctttcccttatatatatg 30338516  T

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