View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13740_low_11 (Length: 357)
Name: NF13740_low_11
Description: NF13740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13740_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 64 - 340
Target Start/End: Original strand, 34714221 - 34714497
Alignment:
| Q |
64 |
ggtttatgggtgctccatttgtggttctaaattcacatctggccaggcacttggtggccatatgaccttccaccatgcacctgtggagacaacctcatcg |
163 |
Q |
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| T |
34714221 |
ggtttatgggtgctccatttgtggttctaaattcacatctggccaggcacttggtggccatatgaccttccaccatgcacctgtggagacaacctcatcg |
34714320 |
T |
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| Q |
164 |
acaccaatggctttgcaaccagatgaagaagatgaagaaccgcctagaaagaaaatgaatgtctctttggatttggatctcaaccttcctgcagcttaag |
263 |
Q |
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| T |
34714321 |
acaccaatggctttgcaaccagacgaagaagatgaagaaccacctagaaagaaaatgaatgtctctttggatttggatctcaaccttcctgcagcttaag |
34714420 |
T |
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| Q |
264 |
aagatcaaagagagttcaagtttgccttgtcattcaagcaacaacaaacaagtcttgttttctctacaccgtctttg |
340 |
Q |
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| T |
34714421 |
aagatcaaagagagttcaagtttgccttgtcattcaagcaacaacaaacaagtcttgttttctctacaccgtctttg |
34714497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 64 - 326
Target Start/End: Original strand, 34710525 - 34710787
Alignment:
| Q |
64 |
ggtttatgggtgctccatttgtggttctaaattcacatctggccaggcacttggtggccatatgaccttccaccatgcacctgtggagacaacctcatcg |
163 |
Q |
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| T |
34710525 |
ggtttatgggtgctccatttgtggttctaaattcacatctggccaggcacttggtggccatatgaccttccaccatgcaccggtggaggaaacctcatcg |
34710624 |
T |
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| Q |
164 |
acaccaatggctttgcaaccagatgaagaagatgaagaaccgcctagaaagaaaatgaatgtctctttggatttggatctcaaccttcctgcagcttaag |
263 |
Q |
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| T |
34710625 |
acaccaatggcttcggaaccagacgaagaagatgaagaaccacctgcaaagaaaatgaatgtccctttggatttggatctcaaccttcctgcagcttaag |
34710724 |
T |
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| Q |
264 |
aagatcaaagagagttcaagtttgccttgtcattcaagcaacaacaaacaagtcttgttttct |
326 |
Q |
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| T |
34710725 |
aagatcaaagagaatcctagtttgtcttatcatccaagcatcaacaaacaagtcttgttttct |
34710787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 40690062 - 40690150
Alignment:
| Q |
206 |
cctagaaagaaaatgaatgtct---ctttggatttggatctcaaccttcctgcagcttaagaagatcaaagagagttcaagtttgcctt |
291 |
Q |
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| T |
40690062 |
cctagaaagaaaaggaatgttttgtctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatctaagtttgcctt |
40690150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 40689911 - 40689975
Alignment:
| Q |
64 |
ggtttatgggtgctccatttgtggttctaaattcacatctggccaggcacttggtggccatatga |
128 |
Q |
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| T |
40689911 |
ggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatga |
40689975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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