View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13740_low_14 (Length: 298)
Name: NF13740_low_14
Description: NF13740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13740_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 21556333 - 21556034
Alignment:
| Q |
1 |
tgccctaagtacacaccttacctaatctgctcgagcaacctagccacttatcaataaactatgtaccataagaga--tgagatgtattcatgttaaattg |
98 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21556333 |
tgccctaagggcacaccttacctaatctgctcgagcaacctagccacttatcaataaactatgtaccataagagagatgagatgtattcatgttaaattg |
21556234 |
T |
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| Q |
99 |
aattgagataagtttaaagataaaagttacgtacttggaagacaaagtacaaattataacatcaagtttgactcaattttaatcgataaccccatgcata |
198 |
Q |
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| T |
21556233 |
aattgagataagtttaaaggtaaaagttacgtacttggaagacaaagtacaaattataacatcaagtttgactcaattttaatcgataaccccatgcata |
21556134 |
T |
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| Q |
199 |
tgaaaatcaatttcaaaattattttgtttcttgcaaaagtaaatccaaaaactgtacatgtttgtcattggcagaccgaaaagaacttgggacaaaatca |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21556133 |
tgaaaatcaatttcaaaattattttgtttcttgcaaaagtaaatccaaaaactgtacatgtttgtcattggcagaccgaaaagaacttgggacaaaatca |
21556034 |
T |
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