View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13740_low_16 (Length: 266)
Name: NF13740_low_16
Description: NF13740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13740_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 10239279 - 10239509
Alignment:
| Q |
17 |
tcacctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtg |
116 |
Q |
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| T |
10239279 |
tcacctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggcctattgtttggatatcaccgtttggtg |
10239378 |
T |
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| Q |
117 |
taactttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239379 |
taactttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattgg |
10239478 |
T |
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| Q |
217 |
attatactgaccagttaacacacgtgctaca |
247 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
10239479 |
attatactgaccagttaacacacgtgctaca |
10239509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 10230499 - 10230729
Alignment:
| Q |
17 |
tcacctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtg |
116 |
Q |
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|||| |||||| ||||| ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| |
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| T |
10230499 |
tcacttgtgtcagagtctattttaggatgcgccgtcatactcatcaagagtttgccgttgaaatcataacggcccattgtttggatgtcaccgtttggtg |
10230598 |
T |
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| Q |
117 |
taactttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattgg |
216 |
Q |
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| T |
10230599 |
ttagtttgacttcataaggaagatctgattctcctaaagcaaaaagacggttaccaaacagagctaaacttgtgttgaccaatccaatgccgttagatgg |
10230698 |
T |
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| Q |
217 |
attatactgaccagttaacacacgtgctaca |
247 |
Q |
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| T |
10230699 |
gttatactgaccggttaacacccgtgctaca |
10230729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 10255326 - 10255132
Alignment:
| Q |
17 |
tcacctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggccgattgtttggatatcaccgtttggtg |
116 |
Q |
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|||||||||||| ||||||||| ||||| || |||||| ||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
10255326 |
tcacctgtgtcgccgtcaattttcggatgtgcagtcatactcatggagagtttaccgttaaaatcataacggccaattgtttggatatcaccgtttggcg |
10255227 |
T |
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| Q |
117 |
taactttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgtta |
211 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| || |||||||||||| |
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| T |
10255226 |
taagattgatttcataaggaagatctgattctcctaaagcaaaaagtttgttaccaaacagagccaaacttgtgttggctaaaccaatgccgtta |
10255132 |
T |
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