View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13740_low_3 (Length: 656)
Name: NF13740_low_3
Description: NF13740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13740_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 17 - 656
Target Start/End: Complemental strand, 38657533 - 38656888
Alignment:
| Q |
17 |
aataacaagttgcatggacacaatttcagtttnnnnnnncaattgaatgcagtctttaaattaaagtggatatata-------gtagtatagtatatcat |
109 |
Q |
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| T |
38657533 |
aataacaagttgcatggacacaatttcagtttaaaaaaacaaatgaatgcagtctttaaattaaagtggatatatatagtagtatagtatagtatatcat |
38657434 |
T |
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| Q |
110 |
actaaagttttgccagcaattaattaaaatactactgaattgtcattgtatacaatagtattatttaatatgtatctttaaccgtccatccactctgaag |
209 |
Q |
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| T |
38657433 |
actaaagttttgccagcaattaattaaaatactactgaattatcattgtatagaatagtattatttaatatgtatctttaaccgtccatccactctgaag |
38657334 |
T |
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| Q |
210 |
ttgagaattgatgcatctctcatgcatgctttgcttccactcacagtcacaacagcactacttacttacaattcagcacacctataacgccgcccaaatt |
309 |
Q |
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| T |
38657333 |
ttgagaattgatgcatctctcatgcatgctttgcttccactcacagtcacaacagcac----tacttacaattcagcacacctattacgccgcccaaatt |
38657238 |
T |
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| Q |
310 |
catata--ccactatacttggtcagggttgtttcgtttctttttatcactcatatatcatatagctaccaatgattatggcggtttagcatttttatttg |
407 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38657237 |
catataacacactatacttggtcagggttgtttcgtttctttttatcactcatatatcatatagctaccaatgattatggcggtttagcatttttatttg |
38657138 |
T |
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| Q |
408 |
ccttctcaaactcaaatgtactacacaaaaccttagattaatgtacat-tgatgctgtaacaggtatgaaattcttttactttccgctttctttttaagg |
506 |
Q |
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| T |
38657137 |
ccttctcaaactcaaatgtactacacaaaaccttagattaattaatgtactatgctgtaacaggtatgaaattcttttactttccgctttctttttcagg |
38657038 |
T |
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| Q |
507 |
aatgacttattttgcatagcatgccacattcagtggactggaattccctcataaagtgcgacctacatttctagtaaatagtacaacctccctctcatat |
606 |
Q |
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| T |
38657037 |
aatgacttattttgcatagcatgccacattcagtggactggaattccctcataaagtgcgacctacatttctagtaaatagtacaacctccctctcatat |
38656938 |
T |
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| Q |
607 |
catataccattgtgtcacaccctttaagaaagttattattactttagatt |
656 |
Q |
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| T |
38656937 |
catataccattgtgtcacaccctttaagaaagttattattagtttagatt |
38656888 |
T |
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Back To:
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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 28748093 - 28748136
Alignment:
| Q |
180 |
tgtatctttaaccgtccatccactctgaagttgagaattgatgc |
223 |
Q |
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| T |
28748093 |
tgtatttttaaccgtccatccactctaaagttgagaattaatgc |
28748136 |
T |
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