View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13740_low_4 (Length: 646)
Name: NF13740_low_4
Description: NF13740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13740_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 13 - 593
Target Start/End: Original strand, 19474882 - 19475462
Alignment:
| Q |
13 |
tcatcaatcaaccttaacttcattgaaaagatcattatccggaatccgttcctcgaacaaaagaaacatagctgatgctagaatctacctcagtgcagcc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19474882 |
tcatcaatcaaccttaacttcattgaaaagatcattatccggaatccgttcctcgaacaaaagaaacatagctgatgctagaatctacctcagtgcagcc |
19474981 |
T |
|
| Q |
113 |
ctaaccaacaaaaacacatgtttagatggtcttgattctgcttctggtacatataaaccaattcttgtggattctattatcaacacttacaaacatgtaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19474982 |
ctaaccaacaaaaacacatgtttagatggtcttgattctgcttctggtacatataaaccaattcttgtggattctattatcaacacttacaaacatgtaa |
19475081 |
T |
|
| Q |
213 |
gtaactctctttctatgctttctaatcctgcacctgagccttcaaatcaccagggtaacaacaaaaaattggtttctccaacatggttatcaaaaaggtt |
312 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
19475082 |
gtaactctctttctatgctttctaatcatgcacctgagccttcaaatcaaaagggtcacaacaaaaatttggtttctccaaaatggttatcaaaaaggtt |
19475181 |
T |
|
| Q |
313 |
agatattgatgaatatgatccaaatgaaatgctagttgtatctgcagatggaagtggaaactttagcactattaatgatgctataaactttgctccaaat |
412 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19475182 |
agattttgatgaatatgatccaaatgaaatgctagttgtatctgcagatggaagtggaaactttagcactattaatgatgctataaactttgctccaaat |
19475281 |
T |
|
| Q |
413 |
aatagtatggttagaatagtgatttatgttaaagaagggtattatgatgaaaatgttgaaataccaagttataaaactaacattgtgatgcttggtgatg |
512 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19475282 |
aatagtttggttaggatagttatttatgttaaagaagggtattatgatgaaaatgttgaaataccaagttataaaactaacattgtgatgcttggtgatg |
19475381 |
T |
|
| Q |
513 |
gaagtgattctactgtcatcactggtaacagaagtgttgttgatggatggaccactttcagatctgcaactttaggtgaag |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19475382 |
gaagtgattctactgtcatcactggtaacagaagtgttgttgatggatggaccactttcagatctgcaactttaggtgaag |
19475462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 354 - 589
Target Start/End: Original strand, 51547331 - 51547566
Alignment:
| Q |
354 |
ctgcagatggaagtggaaactttagcactattaatgatgctataaactttgctccaaataatag-tatggttagaatagtgatttatgttaaagaagggt |
452 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| || || | |||||||||||||| || |||| | || ||| | || ||||| ||||||||| |
|
|
| T |
51547331 |
ctgcagatggaacgggaaactttagcaccattaatgaagccattgaatttgctccaaataacagctatgct-aggataataatctatgtaaaagaaggga |
51547429 |
T |
|
| Q |
453 |
attatgatgaaaatgttgaaataccaagttataaaactaacattgtgatgcttggtgatggaagtgattctactgtcatcactggtaacagaagtgttgt |
552 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||| || ||||| | |||||||||||||| ||| |||||||| ||||| || ||||||| ||| |
|
|
| T |
51547430 |
tatatgaggaaaatgttgaaatttcaagcaataaaaccaatattgttctacttggtgatggaagggatcaaactgtcattactggcaatagaagtgatgt |
51547529 |
T |
|
| Q |
553 |
tgatggatggaccactttcagatctgcaactttaggt |
589 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51547530 |
tgatggatggaccaccttcagatctgcaactttaggt |
51547566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 358 - 414
Target Start/End: Complemental strand, 44476148 - 44476092
Alignment:
| Q |
358 |
agatggaagtggaaactttagcactattaatgatgctataaactttgctccaaataa |
414 |
Q |
| |
|
||||||||||||||| |||| || |||||||||||||||||| |||| |||||||| |
|
|
| T |
44476148 |
agatggaagtggaaattttacaacaattaatgatgctataaacgttgcaccaaataa |
44476092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 358 - 396
Target Start/End: Complemental strand, 44464948 - 44464910
Alignment:
| Q |
358 |
agatggaagtggaaactttagcactattaatgatgctat |
396 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
44464948 |
agatggaagtggaaactttaccacgattaatgatgctat |
44464910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University