View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13740_low_5 (Length: 637)
Name: NF13740_low_5
Description: NF13740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13740_low_5 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 574; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 15 - 620
Target Start/End: Complemental strand, 2821875 - 2821270
Alignment:
| Q |
15 |
gagatgaaactatacaagacctttgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactgacttga |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2821875 |
gagatgaaactatacaagacctttgttgaagttgtgggattttaaagataagaatgagagaaaataataagaaccttgaatgttattgatactgacttga |
2821776 |
T |
|
| Q |
115 |
ttgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatatataaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2821775 |
ttgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatatataaa |
2821676 |
T |
|
| Q |
215 |
ctctaatcctaagagatactcttataaggttataaactaatcacaggaaataacttccgatactctaatacaatattaaagatatcataagatatattct |
314 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2821675 |
ctctaatcctaagagatgctcttataaggttataaactaattgcaggaaataacttccgatactctaatacaatattaaagatattataagatatattct |
2821576 |
T |
|
| Q |
315 |
atgattcttacacttcctttttcagctttcaaaaataatcaagaaatgatgggtggatgaaaccggttggctgagacacatacatacatgtcctcctgat |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2821575 |
atgattcttacacttcctttttcagctttcaaaaataatcaagaaatgatgggtggatgaaaccggttggctgagacacatacatacatgtcctcctgat |
2821476 |
T |
|
| Q |
415 |
taacttcaaatcaactaggcatataaatttacagctgggtaatgatagcagcatttgcatcaatcttgattagccgaataaacaaattcattcaaatgaa |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2821475 |
taacttcaaatcaactaggcatataaatttacagctgggtaatgatagcagcattagcatcaatcttgattagccgaataaacaaattcattcaaatgaa |
2821376 |
T |
|
| Q |
515 |
atggttttgattattattacaagagatgaagtaaagttctcaccaatcttaaaaacagtaaagaacagaaatatcaaaaagacgtctgaatggagtccag |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2821375 |
atggttttgattattattacaagagatgaagtaaagttctcaccaatcttaaaaacagtaaagaacagaaatatcaaaaagacgtctgaatggagtccag |
2821276 |
T |
|
| Q |
615 |
aaatac |
620 |
Q |
| |
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|||||| |
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| T |
2821275 |
aaatac |
2821270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 357 - 567
Target Start/End: Original strand, 2834828 - 2835031
Alignment:
| Q |
357 |
gaaatgatgggtggatgaaaccggttggctgagacacatacatacatgtcctcctgattaacttcaaatcaactaggcatataaatttacagctgggtaa |
456 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |||||||| || ||| |||| |||| ||||||||||||| | ||||||||||||| ||| |
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| T |
2834828 |
gaaatgatggatggatgaaaccggttggctgagacgcatacata----tcgtccagatttactttaaatcaactaggcgtttaaatttacagctacataa |
2834923 |
T |
|
| Q |
457 |
tgatagcagcatttgcatcaatcttgattagccgaataaacaaattcattcaaatgaaatggttttg---attattattacaagagatgaagtaaagttc |
553 |
Q |
| |
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||||| | ||||| ||| || ||||| |||||| | ||||||||| ||||| |||||||| |||||||||||||| | ||||| |||| || |
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| T |
2834924 |
cgatag------tagcatcgatcgtggttagcaaaataaaaatattcattcatatgaagtggttttgattattattattacaagggttgaaggaaagctc |
2835017 |
T |
|
| Q |
554 |
tcaccaatcttaaa |
567 |
Q |
| |
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||||||||||||| |
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| T |
2835018 |
ccaccaatcttaaa |
2835031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 48196871 - 48196786
Alignment:
| Q |
70 |
gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta |
155 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| ||| ||||| ||| |||| ||||||| |||| |||||| | ||||||| |||| |
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| T |
48196871 |
gagagaaaataataagaacctggaatattatttatattgactcgatagtaggttgatacaaaagactaaaccctaatccctgttta |
48196786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 394 - 533
Target Start/End: Complemental strand, 2771991 - 2771858
Alignment:
| Q |
394 |
atacatacatgtcctcctgattaacttcaaatcaactaggcatataaatttacagctgggtaatgatagcagcatttgcatcaatcttgattagccgaat |
493 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||||||| | || | |||||||| | | ||||||| | ||||||| |||| ||||| ||| |
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| T |
2771991 |
atacatacatatcctctcgattaacttcaaatcaactaggcctttatagttacagctagattatgatag------tagcatcaagcttggttagcaaaat |
2771898 |
T |
|
| Q |
494 |
aaacaaattcattcaaatgaaatggttttgattattatta |
533 |
Q |
| |
|
||||| ||||||| |||||| | |||||||||||||||| |
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| T |
2771897 |
aaacatattcatttgaatgaagtagttttgattattatta |
2771858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 615
Target Start/End: Complemental strand, 2771816 - 2771782
Alignment:
| Q |
581 |
agaaatatcaaaaagacgtctgaatggagtccaga |
615 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
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|
| T |
2771816 |
agaaatatcaaaacgacgtctgaatggagtccaga |
2771782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 46574573 - 46574483
Alignment:
| Q |
38 |
tgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgatac |
128 |
Q |
| |
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||||||||||||| | |||| | |||| ||| ||||| |||||||||||||||||| |||||||||||||| || ||| |||||||| |
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| T |
46574573 |
tgttgaagttgtgagaatttagataaaagaataagagatgataataagaaccttgaatagtattgatactgactgaatagtactttgatac |
46574483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 23539823 - 23539739
Alignment:
| Q |
70 |
gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta |
155 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||||| ||||||||| |||| ||||| | ||||||||||| | |||||||||||| |
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|
| T |
23539823 |
gagagaaaataataagacctttgaatattattgata-tgacttgatagtagcttgatccaaaaggctaaaccctaatccctattta |
23539739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 200
Target Start/End: Complemental strand, 40569804 - 40569674
Alignment:
| Q |
71 |
agagaaaataataagaaccttg-aatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaa |
169 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||| || || |||| ||||||| ||| || || | |||||||||||| || |||| || | |
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| T |
40569804 |
agagaaaataataagaacctcggaatgttattgatactggctgaatagtagcttgatacaaaaaactcaattctaatccctatttatagcgatacacgga |
40569705 |
T |
|
| Q |
170 |
ttcaaccttaaatcaagaacaaatcataata |
200 |
Q |
| |
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|||| | |||||||||||||||||| |||| |
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|
| T |
40569704 |
ctcaatcctaaatcaagaacaaatcaaaata |
40569674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 447
Target Start/End: Original strand, 11114579 - 11114630
Alignment:
| Q |
396 |
acatacatgtcctcctgattaacttcaaatcaactaggcatataaatttaca |
447 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
11114579 |
acatacatgtccttctgattaacttcaaatcaaccacacatctaaatttaca |
11114630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 16397967 - 16398052
Alignment:
| Q |
70 |
gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta |
155 |
Q |
| |
|
||||||||||||||| |||||||||| || |||||||| | | || |||| ||||| |||||| ||||| || |||||||||||| |
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| T |
16397967 |
gagagaaaataataaaaaccttgaatattgttgatactaattgaatagtagcttgatcccaaagactaaatactaatccctattta |
16398052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 195 - 309
Target Start/End: Complemental strand, 7380048 - 7379937
Alignment:
| Q |
195 |
ataatattaagatatataaactctaatcctaagagatactcttataaggttataaactaatcacaggaaataacttccgatactctaatacaatattaaa |
294 |
Q |
| |
|
|||||| |||| ||||||| | |||||| || ||||||||| ||| || ||||||||| |||||||||||| |||| ||||||| ||||||||| |
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|
| T |
7380048 |
ataataataagtaatataaaatttaatcccaatagatactct---aagattgtaaactaattctaggaaataacttaagatattctaatataatattaaa |
7379952 |
T |
|
| Q |
295 |
gatatcataagatat |
309 |
Q |
| |
|
| ||| ||||||||| |
|
|
| T |
7379951 |
gttattataagatat |
7379937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 10723775 - 10723853
Alignment:
| Q |
37 |
ttgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactgacttgat |
115 |
Q |
| |
|
|||||||| ||||| ||||||| | ||| | ||||||||||||||||||| |||||| ||||||||| | ||||||| |
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| T |
10723775 |
ttgttgaaattgtgcaattttagataaatggacgagagaaaataataagaactttgaatattattgataataacttgat |
10723853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 195 - 299
Target Start/End: Original strand, 15999232 - 15999333
Alignment:
| Q |
195 |
ataatattaagatatataaactctaatcctaagagatactcttataaggttataaactaatcacaggaaataacttccgatactctaatacaatattaaa |
294 |
Q |
| |
|
|||||| |||| ||||||| || ||||||||||||||||| |||| |||||||||||||| | || ||||||| |||||| ||||| ||||| || |
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|
| T |
15999232 |
ataataataagtaatataaaatcaaatcctaagagatactc---taagattataaactaatcatatgacataacttaagatactttaatataatatcgaa |
15999328 |
T |
|
| Q |
295 |
gatat |
299 |
Q |
| |
|
||||| |
|
|
| T |
15999329 |
gatat |
15999333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 32200 - 32103
Alignment:
| Q |
100 |
ttgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcata |
197 |
Q |
| |
|
|||||| ||||||||| |||| ||||||| ||| || || || |||||||||||| ||||||| | | | |||| | | |||||||||||||||||| |
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|
| T |
32200 |
ttgataatgacttgatagtaggttgatacaaaaaactgaatactaatccctatttatagggatacatagactcaatcatgaatcaagaacaaatcata |
32103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 42286518 - 42286593
Alignment:
| Q |
159 |
ggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatatataaactctaatcctaagagatactct |
236 |
Q |
| |
|
||||| ||||| |||| |||||||||||| ||||||| |||| ||| | || |||||||| ||||||||||||||||| |
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|
| T |
42286518 |
ggatacacaaactcaatcttaaatcaagaccaaatcaaaataataaca-at-taaactctgatcctaagagatactct |
42286593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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