View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13740_low_6 (Length: 594)
Name: NF13740_low_6
Description: NF13740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13740_low_6 |
 | |
|
| [»] scaffold0349 (1 HSPs) |
| | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
| [»] scaffold0277 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 34)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 10 - 401
Target Start/End: Complemental strand, 26890955 - 26890566
Alignment:
| Q |
10 |
acatcatcataccagaaagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26890955 |
acattatcataccagaaagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg |
26890856 |
T |
|
| Q |
110 |
ttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgtt |
209 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26890855 |
tgttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgtt |
26890756 |
T |
|
| Q |
210 |
gttgctgtgacacaagttctgaccttcatctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacaca |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26890755 |
gttgctgtgacacaagttctgaccttcatctggtt--ctctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacaca |
26890658 |
T |
|
| Q |
310 |
ttgattccaatttgtgtactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaacc |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26890657 |
ttgattccaatttgtgtactacgattgaaattctcataactcttcaaatgagctgcaaagcataccgttactcactgccctttagaacaacc |
26890566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 326 - 576
Target Start/End: Complemental strand, 26890275 - 26890025
Alignment:
| Q |
326 |
tactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaac |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
26890275 |
tactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacggattctgtggtgcgaacaac |
26890176 |
T |
|
| Q |
426 |
cactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttag |
525 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26890175 |
ctctagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttag |
26890076 |
T |
|
| Q |
526 |
agaaaagttgcgcaaataaccaacaacaggttgaattcatcggcacttgat |
576 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26890075 |
agaaaagttgtgcaaataaccaacaacaggctgaattcatcggcacttgat |
26890025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 38 - 542
Target Start/End: Original strand, 27713769 - 27714257
Alignment:
| Q |
38 |
tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct |
137 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| | ||| |||||||||| ||||||||||| |
|
|
| T |
27713769 |
tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaattaatcatacatacatatgttgttgctgctacacaagttctgtct |
27713868 |
T |
|
| Q |
138 |
cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagttctgaccttca |
237 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||| | |||||||||||| |||||||||| |
|
|
| T |
27713869 |
cagaaaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttc--------- |
27713959 |
T |
|
| Q |
238 |
tctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatttgtgtactacgattga |
337 |
Q |
| |
|
||||| || || || |||||||| || | ||||||| || |||||||||| || ||||||| | |||||||| |||||||||| |||||| |
|
|
| T |
27713960 |
-------tactccttctataagaattggtgaataccgcatcctctctcatgcttcctttcttgttgaacacgtagattccaaattgtgtactaagattga |
27714052 |
T |
|
| Q |
338 |
aattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatct |
437 |
Q |
| |
|
|||||||| | | || |||||||||||||||||||| | |||||| ||||||||| |||||||| || ||||||| | || ||||||| |||||| | | |
|
|
| T |
27714053 |
aattctcaaagcactccaactgagctgcaaagcatatcattactcgctgccctttcgaacaaccaacggattctgcgctgtaagcaacctctagacttgt |
27714152 |
T |
|
| Q |
438 |
cccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgcg |
537 |
Q |
| |
|
| ||||||| | ||||||||||||||||||| | |||||||||||||||||||||||| || || |||| |||||||||||||||||||||||||| |
|
|
| T |
27714153 |
cgcatgacaatgcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcg |
27714252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 83 - 534
Target Start/End: Complemental strand, 26854094 - 26853623
Alignment:
| Q |
83 |
taaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataact |
182 |
Q |
| |
|
|||||| |||||||||||||||| |||| || ||||| |||| |||||||||||||||||||||| ||||||||||| |||||||||| |||||||||| |
|
|
| T |
26854094 |
taaaaggaaattaatcatacatatatgtgtttctgctcctacgcaagttctgtctcagaaaactgacttggcagaaaattgtttttacacaagaataact |
26853995 |
T |
|
| Q |
183 |
tattaatcacaagagccattcggtgttgttgctgtgacaca----------------------agttctgaccttcatctggtttactctttacatgagc |
260 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| ||||| ||||||||| |||||||| |||||||||| ||| || |
|
|
| T |
26853994 |
tattaatcacaagagccatacagtgttgttgctgctacacaagttcggtctcggacacttccaagttctgactttcatctgatttactctttccataagg |
26853895 |
T |
|
| Q |
261 |
attggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatttgtgtactacgattgaaattctcataactcttcaactga |
360 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||| |||||| ||| ||||||||||||||||| |||||| |||||| |||||| |||||| |
|
|
| T |
26853894 |
gttggtgaatatcacatcctccttcgtgcttccttcattcttgaacatgttggttccaatttgtgtactaaaattgaatttctcaaaactctacaactgg |
26853795 |
T |
|
| Q |
361 |
gctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccag |
460 |
Q |
| |
|
||||||||||||| | |||||||||||||||| ||||| || ||||||| ||||||| | |||||| ||||| |||| |||||| | |||||||||| |
|
|
| T |
26853794 |
gctgcaaagcatatcattactcactgccctttcgaacagccaacagattttgtggtgtgcgcaacccctagatatcttgaatgacaatgcaaatagccag |
26853695 |
T |
|
| Q |
461 |
atgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagtt |
534 |
Q |
| |
|
||||| |||||| | | ||||||||| || |||||| || || | ||| ||||||||||||||||||||||| |
|
|
| T |
26853694 |
atgaccacagat-ggatactgacaatgcacggtcaaagaacaagt-aattcttagttttggttagagaaaagtt |
26853623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 315 - 568
Target Start/End: Original strand, 27702263 - 27702516
Alignment:
| Q |
315 |
tccaatttgtgtactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtg |
414 |
Q |
| |
|
||||| |||||||||| ||| |||||||||| | | || |||||||||||||||||||| | |||||||||| ||||| |||||||| || ||||||||| |
|
|
| T |
27702263 |
tccaaattgtgtactaagatggaaattctcaaagcactccaactgagctgcaaagcatatcattactcactgtcctttcgaacaaccaacggattctgtg |
27702362 |
T |
|
| Q |
415 |
gtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgttta |
514 |
Q |
| |
|
|| ||||||| |||||| | || ||||||| | ||||||||||||||||||| | |||||||||||||||||||||||| || || |||| ||| |
|
|
| T |
27702363 |
ctgtaagcaacctctagacttgtcgcatgacaatgcaaatagccagatgactacatgtcgtttcctgacaatgtacagtcaaaaaacaagaaaatactta |
27702462 |
T |
|
| Q |
515 |
gttttggttagagaaaagttgcgcaaataaccaacaacaggttgaattcatcgg |
568 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||||||| |||| ||||||| |
|
|
| T |
27702463 |
gttttggttagagaaaagttgcgtaaattacagacaacaggctgaaatcatcgg |
27702516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 384 - 536
Target Start/End: Complemental strand, 26966256 - 26966104
Alignment:
| Q |
384 |
ctgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgac |
483 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||| ||||| | |||||||| || ||||||||| |||||||||||||||||||||| || ||||||| |
|
|
| T |
26966256 |
ctgccctttcgaacaaccaacggattctgtggtgcaagcaatctctagacatgtcgcatgacagtgcaaatagccagatgactacagatggtgtcctgac |
26966157 |
T |
|
| Q |
484 |
aatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgc |
536 |
Q |
| |
|
|||||||||||||| || || |||| | |||||||||||| |||||||||||| |
|
|
| T |
26966156 |
aatgtacagtcaaagaacaagtaaaagcttagttttggtttgagaaaagttgc |
26966104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 332 - 568
Target Start/End: Complemental strand, 26628216 - 26627980
Alignment:
| Q |
332 |
gattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactag |
431 |
Q |
| |
|
|||||||||||||| | | || |||||||| || || ||||| | ||||||||| ||| || ||||| || || |||| ||| |||| ||||||| |||| |
|
|
| T |
26628216 |
gattgaaattctcaaagcactccaactgagatgtaatgcatatcattactcacttcccattcgaacagccaacggattttgttgtgcaagcaacctctag |
26628117 |
T |
|
| Q |
432 |
acatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaa |
531 |
Q |
| |
|
|||||| ||||||| | | | ||||||||||||| | | |||||||||||||||||||||||| || ||| |||| |||||||||||||||||||| |
|
|
| T |
26628116 |
acatcttgcatgacaatgcagagagccagatgactaaatgtggtttcctgacaatgtacagtcaaagaacaaaaaaatacttagttttggttagagaaaa |
26628017 |
T |
|
| Q |
532 |
gttgcgcaaataaccaacaacaggttgaattcatcgg |
568 |
Q |
| |
|
|||||| |||| ||| || ||||| |||| ||||||| |
|
|
| T |
26628016 |
gttgcgtaaattaccgacgacaggctgaaatcatcgg |
26627980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 332 - 568
Target Start/End: Complemental strand, 26734193 - 26733957
Alignment:
| Q |
332 |
gattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactag |
431 |
Q |
| |
|
|||||||||||||| | | || |||||||| || || ||||| | ||||||||| ||| || ||||| || || |||| ||| |||| ||||||| |||| |
|
|
| T |
26734193 |
gattgaaattctcaaagcactccaactgagatgtaatgcatatcattactcacttcccattcgaacagccaacggattttgttgtgcaagcaacctctag |
26734094 |
T |
|
| Q |
432 |
acatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaa |
531 |
Q |
| |
|
|||||| ||||||| | | | ||||||||||||| | | |||||||||||||||||||||||| || ||| |||| |||||||||||||||||||| |
|
|
| T |
26734093 |
acatcttgcatgacaatgcagagagccagatgactaaatgtggtttcctgacaatgtacagtcaaagaacaaaaaaatacttagttttggttagagaaaa |
26733994 |
T |
|
| Q |
532 |
gttgcgcaaataaccaacaacaggttgaattcatcgg |
568 |
Q |
| |
|
|||||| |||| ||| || ||||| |||| ||||||| |
|
|
| T |
26733993 |
gttgcgtaaattaccgacgacaggctgaaatcatcgg |
26733957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 365 - 536
Target Start/End: Complemental strand, 26651281 - 26651110
Alignment:
| Q |
365 |
caaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatga |
464 |
Q |
| |
|
||||||||| | |||||||||||||||| |||||||| ||||||||||||||||||| || | |||||||| || ||||||| | | |||| ||| ||| |
|
|
| T |
26651281 |
caaagcatagcattactcactgccctttcgaacaaccaacagattctgtggtgcgagaaatctctagacatatcgcatgacaatgcacatagacaggtga |
26651182 |
T |
|
| Q |
465 |
ctacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgc |
536 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||| || || | ||| |||||||||||| |||||| |||| |
|
|
| T |
26651181 |
ctacagatggtttcctgacaatgtacagacaaagaacaagttaattcgtagttttggttaaagaaaacttgc |
26651110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 365 - 536
Target Start/End: Complemental strand, 26757249 - 26757078
Alignment:
| Q |
365 |
caaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatga |
464 |
Q |
| |
|
||||||||| | |||||||||||||||| |||||||| ||||||||||||||||||| || | |||||||| || ||||||| | | |||| ||| ||| |
|
|
| T |
26757249 |
caaagcatagcattactcactgccctttcgaacaaccaacagattctgtggtgcgagaaatctctagacatatcgcatgacaatgcacatagacaggtga |
26757150 |
T |
|
| Q |
465 |
ctacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgc |
536 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||| || || | ||| |||||||||||| |||||| |||| |
|
|
| T |
26757149 |
ctacagatggtttcctgacaatgtacagacaaagaacaagttaattcgtagttttggttaaagaaaacttgc |
26757078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 406 - 536
Target Start/End: Original strand, 27422508 - 27422638
Alignment:
| Q |
406 |
gattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaat |
505 |
Q |
| |
|
|||||| || ||||||||| | |||||||| || ||||||| | |||||||||||||||||||||| ||||||||||||||||||| |||| || || | |
|
|
| T |
27422508 |
gattctatgctgcgagcaatctctagacatgtcgcatgacaatgcaaatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagt |
27422607 |
T |
|
| Q |
506 |
aaatgtttagttttggttagagaaaagttgc |
536 |
Q |
| |
|
||||| |||||||| |||||||||||||||| |
|
|
| T |
27422608 |
aaatgcttagttttcgttagagaaaagttgc |
27422638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 26631847 - 26631744
Alignment:
| Q |
127 |
aagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagt |
226 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| | ||||||||| | |||||||| |
|
|
| T |
26631847 |
aagttctgtctcagaaaacagatttgggagaaaagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgcagctacacaagt |
26631748 |
T |
|
| Q |
227 |
tctg |
230 |
Q |
| |
|
|||| |
|
|
| T |
26631747 |
tctg |
26631744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 26737822 - 26737719
Alignment:
| Q |
127 |
aagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagt |
226 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| | ||||||||| | |||||||| |
|
|
| T |
26737822 |
aagttctgtctcagaaaacagatttgggagaaaagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgcagctacacaagt |
26737723 |
T |
|
| Q |
227 |
tctg |
230 |
Q |
| |
|
|||| |
|
|
| T |
26737722 |
tctg |
26737719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 378 - 534
Target Start/End: Complemental strand, 26828524 - 26828368
Alignment:
| Q |
378 |
tactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagttt |
477 |
Q |
| |
|
|||||| |||||||| || |||| || |||| |||||| ||||||||||||||||||| | ||||||| | ||||||||||| ||||||||| | | |
|
|
| T |
26828524 |
tactcattgccctttcgagcaacaaacggattttgtggtacgagcaaccactagacatcccgcatgacaatgcgaatagccagatcactacagatggact |
26828425 |
T |
|
| Q |
478 |
cctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagtt |
534 |
Q |
| |
|
|||||||||||||||||||| || || ||||| |||||||||| |||||||||||| |
|
|
| T |
26828424 |
cctgacaatgtacagtcaaaaaacaagaaaatgcttagttttggatagagaaaagtt |
26828368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 95 - 230
Target Start/End: Original strand, 27422277 - 27422412
Alignment:
| Q |
95 |
aatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaa |
194 |
Q |
| |
|
|||||||||||||| | ||| |||||| ||| ||||||||| ||||||| ||||||||||||||| || ||||||| ||||||| ||||||||| |||| |
|
|
| T |
27422277 |
aatcatacatacatttgttgttgctgcgacacaagttctgttgcagaaaaatgatttggcagaaaactgcttttacacaagaataccttattaattacaa |
27422376 |
T |
|
| Q |
195 |
gagccattcggtgttgttgctgtgacacaagttctg |
230 |
Q |
| |
|
||||||| | |||||||| ||| || ||||||||| |
|
|
| T |
27422377 |
gagccatacagtgttgtttctgctactcaagttctg |
27422412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 116 - 230
Target Start/End: Original strand, 27651942 - 27652055
Alignment:
| Q |
116 |
tgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgct |
215 |
Q |
| |
|
|||||||| | ||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| || || | ||||||||||| |
|
|
| T |
27651942 |
tgctgctaaacaagttctgtctca-aaaactgatttggcagaaaagtgtttttacacatgaataacttattaatcacaaaagttatacagtgttgttgct |
27652040 |
T |
|
| Q |
216 |
gtgacacaagttctg |
230 |
Q |
| |
|
| || ||||||||| |
|
|
| T |
27652041 |
gctacgcaagttctg |
27652055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 26966482 - 26966390
Alignment:
| Q |
137 |
tcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagttct |
229 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||| |||||||||| |||||||||| | || ||||||||| ||||||||||| |
|
|
| T |
26966482 |
tcagaaaactgatttggcagcaaagtgtttttacacaagaataccttattaatctcaagagccatacagttttgttgctgctacacaagttct |
26966390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 362 - 446
Target Start/End: Complemental strand, 31289490 - 31289406
Alignment:
| Q |
362 |
ctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgaca |
446 |
Q |
| |
|
|||||||||||| | |||||||||||||||| |||||||| || ||||||||| |||||||||||||||||||| || ||||||| |
|
|
| T |
31289490 |
ctgcaaagcatagcattactcactgccctttcgaacaaccaacggattctgtgctgcgagcaaccactagacatgtcgcatgaca |
31289406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 312 - 536
Target Start/End: Complemental strand, 26631693 - 26631460
Alignment:
| Q |
312 |
gattccaatttgtgtactacgattgaaattctcataactcttcaac---------tgagctgcaaagcataccgttactcactgccctttagaacaaccg |
402 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||| |||| |||||||| ||||||| | |||||||||||||||| |||||| |
|
|
| T |
26631693 |
gattccaatttgtgtactaatattgaaattctcaaaactctgcaaccagtataactgagctgcgaagcatagcattactcactgccctttggaacaagta |
26631594 |
T |
|
| Q |
403 |
a-cagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaa |
501 |
Q |
| |
|
| | ||||||||| ||||||||||| |||||||| | | |||| | || | ||||||||||||||||| | ||||||| |||||||| || || | |
|
|
| T |
26631593 |
aacggattctgtgctgcgagcaacctctagacatgttg-aggacaatgcaagtggccagatgactacagatggcttcctgaaaatgtacattccaagagc |
26631495 |
T |
|
| Q |
502 |
aaataaatgtttagttttggttagagaaaagttgc |
536 |
Q |
| |
|
|| |||||| || |||||||||||||||||||||| |
|
|
| T |
26631494 |
aagtaaatgctttgttttggttagagaaaagttgc |
26631460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 312 - 536
Target Start/End: Complemental strand, 26737668 - 26737435
Alignment:
| Q |
312 |
gattccaatttgtgtactacgattgaaattctcataactcttcaac---------tgagctgcaaagcataccgttactcactgccctttagaacaaccg |
402 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||| |||| |||||||| ||||||| | |||||||||||||||| |||||| |
|
|
| T |
26737668 |
gattccaatttgtgtactaatattgaaattctcaaaactctgcaaccagtataactgagctgcgaagcatagcattactcactgccctttggaacaagta |
26737569 |
T |
|
| Q |
403 |
a-cagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaa |
501 |
Q |
| |
|
| | ||||||||| ||||||||||| |||||||| | | |||| | || | ||||||||||||||||| | ||||||| |||||||| || || | |
|
|
| T |
26737568 |
aacggattctgtgctgcgagcaacctctagacatgttg-aggacaatgcaagtggccagatgactacagatggcttcctgaaaatgtacattccaagagc |
26737470 |
T |
|
| Q |
502 |
aaataaatgtttagttttggttagagaaaagttgc |
536 |
Q |
| |
|
|| |||||| || |||||||||||||||||||||| |
|
|
| T |
26737469 |
aagtaaatgctttgttttggttagagaaaagttgc |
26737435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 488
Target Start/End: Original strand, 27652069 - 27652339
Alignment:
| Q |
222 |
caagttctgaccttcatctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatt |
321 |
Q |
| |
|
|||||||||| |||||||| ||| |||||| || || || ||||| |||||||||||| | ||||||| ||||| |||||| | |||||||||| |
|
|
| T |
27652069 |
caagttctgatcttcatcttcttttctctttctataaggataggtgaatatcacatcctcttctgtgcttc---ttttcttgaacatgtggattccaatt |
27652165 |
T |
|
| Q |
322 |
tgtgtactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactca-------ctgccctttagaacaaccgacagattctgtg |
414 |
Q |
| |
|
||||||||| ||||||||| | | | |||| ||||||||||||||| || | ||| ||| ||||||||| |||||||| | |||| |||| |
|
|
| T |
27652166 |
tgtgtactaagattgaaatcttaaaacctctcaaactgagctgcaaagaatgtcattattcattagtcactgccctttggaacaaccaatggattttgtg |
27652265 |
T |
|
| Q |
415 |
gtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgt |
488 |
Q |
| |
|
|||||||||| |||||||| || ||||||| | ||||||||||||||| | |||| ||||||||||||||| |
|
|
| T |
27652266 |
gtgcgagcaatgtctagacatatcacatgacaatgcaaatagccagatgaccatagatggtttcctgacaatgt |
27652339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 452 - 532
Target Start/End: Complemental strand, 26640758 - 26640678
Alignment:
| Q |
452 |
aatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaag |
532 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||| || | |||||| |||||||||| |||||||||| |
|
|
| T |
26640758 |
aatagccagatcactacagatggtttcctgacaatgtacagtcaaagaactagtaaatgcttagttttggatagagaaaag |
26640678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 452 - 532
Target Start/End: Complemental strand, 26746724 - 26746644
Alignment:
| Q |
452 |
aatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaag |
532 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||| || | |||||| |||||||||| |||||||||| |
|
|
| T |
26746724 |
aatagccagatcactacagatggtttcctgacaatgtacagtcaaagaactagtaaatgcttagttttggatagagaaaag |
26746644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 31289630 - 31289542
Alignment:
| Q |
142 |
aaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagttctg |
230 |
Q |
| |
|
||||||| ||||||| ||||||||||||| ||||||| ||||||||||||||||||||| | |||||||| ||| ||||| |||||| |
|
|
| T |
31289630 |
aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg |
31289542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 27651844 - 27651898
Alignment:
| Q |
44 |
atctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatc |
98 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
27651844 |
atctgtcagtatcgcaatatgtacaaactcttgtattcgtaaaagcaaattaatc |
27651898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 26641290 - 26641217
Alignment:
| Q |
28 |
gagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata |
101 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||| |||| |||||| || ||||| ||| ||||||||| |
|
|
| T |
26641290 |
gagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaatcaatttaatcata |
26641217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 26747256 - 26747183
Alignment:
| Q |
28 |
gagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata |
101 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||| |||| |||||| || ||||| ||| ||||||||| |
|
|
| T |
26747256 |
gagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaatcaatttaatcata |
26747183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 450 - 566
Target Start/End: Complemental strand, 31291462 - 31291346
Alignment:
| Q |
450 |
aaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgcgcaaataaccaac |
549 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| |||| ||| || || || || |||| |||||||| ||||||||||||||||| |||| ||| || |
|
|
| T |
31291462 |
aaaatagccagatgattacagatggtttcctggcaattcacaatcgaagaacaagaaaatacttagtttttgttagagaaaagttgcgtaaattaccgac |
31291363 |
T |
|
| Q |
550 |
aacaggttgaattcatc |
566 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
31291362 |
tacaggctgaattcatc |
31291346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 474 - 537
Target Start/End: Original strand, 27652343 - 27652406
Alignment:
| Q |
474 |
gtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgcg |
537 |
Q |
| |
|
|||||||||||||||| |||||| || || |||||| |||||||||||||||||||||||||| |
|
|
| T |
27652343 |
gtttcctgacaatgtaaagtcaatgaacaagtaaatgcttagttttggttagagaaaagttgcg |
27652406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 361
Target Start/End: Complemental strand, 26828573 - 26828527
Alignment:
| Q |
315 |
tccaatttgtgtactacgattgaaattctcataactcttcaactgag |
361 |
Q |
| |
|
|||||||||| ||||| |||||||||||| | ||||||||||||||| |
|
|
| T |
26828573 |
tccaatttgtatactaagattgaaattctgaaaactcttcaactgag |
26828527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 528
Target Start/End: Complemental strand, 26964411 - 26964361
Alignment:
| Q |
478 |
cctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagaga |
528 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||| | |||||||||||||||| |
|
|
| T |
26964411 |
cctgacaatgtacagacaaagaaaaagtaaatttgtagttttggttagaga |
26964361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 26828784 - 26828715
Alignment:
| Q |
32 |
ttgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata |
101 |
Q |
| |
|
|||||| |||| |||| ||| ||||||| ||||||||||| |||||| || |||| |||| ||||||||| |
|
|
| T |
26828784 |
ttgtgaggaactatctttcaatatcacagtatgtacaaacacttgtattcctaaaggcaatttaatcata |
26828715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 456 - 496
Target Start/End: Complemental strand, 26807333 - 26807293
Alignment:
| Q |
456 |
gccagatgactacagatagtttcctgacaatgtacagtcaa |
496 |
Q |
| |
|
|||||| |||||||||| |||||||||||| |||||||||| |
|
|
| T |
26807333 |
gccagacgactacagatggtttcctgacaaagtacagtcaa |
26807293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 438
Target Start/End: Original strand, 27586671 - 27586755
Alignment:
| Q |
354 |
caactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctc |
438 |
Q |
| |
|
||||||| ||||||||||| | |||||||||||| ||| ||||| | |||||||||||||| |||| ||| |||||||||| |
|
|
| T |
27586671 |
caactgaattgcaaagcatatcattactcactgccatttcaaacaagccacagattctgtggtttgagccacctatagacatctc |
27586755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 188; Significance: 1e-101; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 38 - 542
Target Start/End: Complemental strand, 18175 - 17687
Alignment:
| Q |
38 |
tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct |
137 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| | ||| |||||||||| ||||||||||| |
|
|
| T |
18175 |
tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaattaatcatacatacatatgttgttgctgctacacaagttctgtct |
18076 |
T |
|
| Q |
138 |
cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagttctgaccttca |
237 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||| | |||||||||||| |||||||||| |
|
|
| T |
18075 |
cagaaaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttc--------- |
17985 |
T |
|
| Q |
238 |
tctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatttgtgtactacgattga |
337 |
Q |
| |
|
||||| || || || |||||||| || | ||||||| || |||||||||| || ||||||| | |||||||| |||||||||| |||||| |
|
|
| T |
17984 |
-------tactccttctataagaattggtgaataccgcatcctctctcatgcttcctttcttgttgaacacgtagattccaaattgtgtactaagattga |
17892 |
T |
|
| Q |
338 |
aattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatct |
437 |
Q |
| |
|
|||||||| | | || |||||||||||||||||||| | |||||| ||||||||| |||||||| || ||||||| | || ||||||| |||||| | | |
|
|
| T |
17891 |
aattctcaaagcactccaactgagctgcaaagcatatcattactcgctgccctttcgaacaaccaacggattctgcgctgtaagcaacctctagacttgt |
17792 |
T |
|
| Q |
438 |
cccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggttagagaaaagttgcg |
537 |
Q |
| |
|
| ||||||| | ||||||||||||||||||| | |||||||||||||||||||||||| || || |||| |||||||||||||||||||||||||| |
|
|
| T |
17791 |
cgcatgacaatgcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggttagagaaaagttgcg |
17692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 6e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 38 - 542
Target Start/End: Original strand, 29269635 - 29270150
Alignment:
| Q |
38 |
tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct |
137 |
Q |
| |
|
|||| |||| ||| |||||||||||| |||| ||||||||| | ||||||||||||||||||| ||||||| | ||| |||||||||| ||||||||||| |
|
|
| T |
29269635 |
tgaaacatcagtcggtatcacaatatctacatactcttgtattattaaaagcaaattaatcatgcatacatatgttgttgctgctacacaagttctgtct |
29269734 |
T |
|
| Q |
138 |
cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagttctgaccttca |
237 |
Q |
| |
|
| ||||| |||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| | |||||||||||| |||||||||||| ||||| |
|
|
| T |
29269735 |
ctgaaaagtgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagccatacagtgttgttgctgctacacaagttctg--cttca |
29269832 |
T |
|
| Q |
238 |
-------------tctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatttgt |
324 |
Q |
| |
|
|||| ||||||| || || || |||||||| || | ||||||| || |||||||||| || ||||||| | |||||||| |||| |
|
|
| T |
29269833 |
gaaaattccaagttctgatttactccttctataagaattggtgaataccgcatcctctctcatgcttcctttcttattgaacacgtagattccaaattgt |
29269932 |
T |
|
| Q |
325 |
gtactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaa |
424 |
Q |
| |
|
|||||| ||| ||||||| || | | || |||||||||||||||||||| | |||||||||||||||| ||||||| || |||| |||| || |||||| |
|
|
| T |
29269933 |
gtactaagatggaaattcacaaagcactccaactgagctgcaaagcatatcattactcactgccctttcgaacaacaaacggattatgtgctgtgagcaa |
29270032 |
T |
|
| Q |
425 |
ccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttttggtta |
524 |
Q |
| |
|
|| |||||| | || ||||||| | ||||||||||||||||||| | |||||||||||||||||||||||| || || |||| ||||||||||||| |
|
|
| T |
29270033 |
cctctagacttgtcgcatgacaatgcaaatagccagatgactacatgtggtttcctgacaatgtacagtcaaagaacaagaaaatacttagttttggtta |
29270132 |
T |
|
| Q |
525 |
gagaaaagttgcgcaaat |
542 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
29270133 |
gagaaaagttgcgtaaat |
29270150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 406 - 536
Target Start/End: Complemental strand, 64855 - 64725
Alignment:
| Q |
406 |
gattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaatagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaat |
505 |
Q |
| |
|
|||||| || ||||||||| | |||||||| || ||||||| | |||||||||||||||||||||| ||||||||||||||||||| |||| || || | |
|
|
| T |
64855 |
gattctatgctgcgagcaatctctagacatgtcgcatgacaatgcaaatagccagatgactacagatggtttcctgacaatgtacagacaaagaacaagt |
64756 |
T |
|
| Q |
506 |
aaatgtttagttttggttagagaaaagttgc |
536 |
Q |
| |
|
||||| |||||||| |||||||||||||||| |
|
|
| T |
64755 |
aaatgcttagttttcgttagagaaaagttgc |
64725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 95 - 230
Target Start/End: Complemental strand, 65086 - 64951
Alignment:
| Q |
95 |
aatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaa |
194 |
Q |
| |
|
|||||||||||||| | ||| |||||| ||| ||||||||| ||||||| ||||||||||||||| || ||||||| ||||||| ||||||||| |||| |
|
|
| T |
65086 |
aatcatacatacatttgttgttgctgcgacacaagttctgttgcagaaaaatgatttggcagaaaactgcttttacacaagaataccttattaattacaa |
64987 |
T |
|
| Q |
195 |
gagccattcggtgttgttgctgtgacacaagttctg |
230 |
Q |
| |
|
||||||| | |||||||| ||| || ||||||||| |
|
|
| T |
64986 |
gagccatacagtgttgtttctgctactcaagttctg |
64951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 222 - 412
Target Start/End: Original strand, 18692271 - 18692462
Alignment:
| Q |
222 |
caagttctgaccttcatctggtttactctttacatgagcattggtgattatcacatcctccttcgtgcttccttttttcctgaacacattg-attccaat |
320 |
Q |
| |
|
||||||||| ||||||||| ||| |||||| || || |||| ||| ||||||||||| || | ||||| ||| ||| |||||||| || |||| ||| |
|
|
| T |
18692271 |
caagttctgttcttcatctgattttctctttctataaggattgatgaatatcacatcctgctccatgctttttttcttcttgaacacagtggattctaat |
18692370 |
T |
|
| Q |
321 |
ttgtgtactacgattgaaattctcataactcttcaactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctg |
412 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||| |||||||| ||||||||||| | ||||||||||||||| |||||||| || ||||||| |
|
|
| T |
18692371 |
ttgtctactaagattgaaattctcaaaactctccaactgaggtgcaaagcatatcaatactcactgccctttcgaacaaccaacggattctg |
18692462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 354 - 550
Target Start/End: Complemental strand, 5083269 - 5083071
Alignment:
| Q |
354 |
caactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagcaaccactagacatctcccatgacagtaaaaa |
453 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||| ||||| | || |||||||||| |||| ||| ||||||||||| |||||| | ||| |
|
|
| T |
5083269 |
caactgagctgcaaagcatatcattactcactgccctttcaaacaatccacggattctgtggattgagccacctctagacatctcgtatgacaatgcaaa |
5083170 |
T |
|
| Q |
454 |
tagccagatgactacagatagtttcctgacaatgtacagtcaaataaaaaataaatgtttagttt-tggtt-agagaaaagttgcgcaaataaccaaca |
550 |
Q |
| |
|
||||||| ||||||||| |||| ||| ||||||||||| ||| || |||| |||| ||||||| | ||| ||||||||||||| |||| ||||||| |
|
|
| T |
5083169 |
aagccagacaactacagatggttttctgtcaatgtacagtaaaagaagaaatgaatgcttagtttatagttaagagaaaagttgcaaaaattaccaaca |
5083071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 18682705 - 18682787
Alignment:
| Q |
27 |
agagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg |
109 |
Q |
| |
|
||||||||||| ||||||||| || |||| | |||||||||| ||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
18682705 |
agagattgtgacgaaccatctatcggtatgaaaatatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg |
18682787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 18650319 - 18650369
Alignment:
| Q |
59 |
aatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg |
109 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
18650319 |
aatatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg |
18650369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 18718539 - 18718588
Alignment:
| Q |
60 |
atatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg |
109 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
18718539 |
atatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg |
18718588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 363
Target Start/End: Original strand, 18674282 - 18674333
Alignment:
| Q |
312 |
gattccaatttgtgtactacgattgaaattctcataactcttcaactgagct |
363 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| |||||| |||||||||| |
|
|
| T |
18674282 |
gattccaatttgtctactaagattgaaattctcaaaactctccaactgagct |
18674333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 18692037 - 18692081
Alignment:
| Q |
31 |
attgtgatgaaccatctgtcagtatcacaatatgtacaaactctt |
75 |
Q |
| |
|
|||||||||||||||||||| |||| | ||||||||||||||||| |
|
|
| T |
18692037 |
attgtgatgaaccatctgtcggtatgaaaatatgtacaaactctt |
18692081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 551
Target Start/End: Original strand, 18674446 - 18674490
Alignment:
| Q |
507 |
aatgtttagttttggttagagaaaagttgcgcaaataaccaacaa |
551 |
Q |
| |
|
|||| |||||||||||||||||||||||| | |||| |||||||| |
|
|
| T |
18674446 |
aatgcttagttttggttagagaaaagttgtgtaaattaccaacaa |
18674490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 422
Target Start/End: Original strand, 18718903 - 18718971
Alignment:
| Q |
354 |
caactgagctgcaaagcataccgttactcactgccctttagaacaaccgacagattctgtggtgcgagc |
422 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||| || |||||||| ||||| |||| |||||||| |
|
|
| T |
18718903 |
caactgaggtgcaaagcatatcaatactcactgcccgttcgaacaaccaacagaatctgcagtgcgagc |
18718971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 17989856 - 17989928
Alignment:
| Q |
270 |
tatcacatcctccttcgtgcttccttttttcctgaacacattgattccaatttgtgtactacgattgaaattc |
342 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||||||| |||||| |||||||||||| ||||| ||||| |
|
|
| T |
17989856 |
tatcacatcctccttcgtgcttgttttcttattgaacacatggattcccatttgtgtactaagattggaattc |
17989928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 946412 - 946469
Alignment:
| Q |
53 |
tatcacaatatgtacaaactcttgta-ctcttaaaagcaaattaatcatacatacatg |
109 |
Q |
| |
|
||||| |||||||||||||||||| | ||||||||||||| |||||| ||||||||| |
|
|
| T |
946412 |
tatcaaaatatgtacaaactcttgcatctcttaaaagcaatctaatcacacatacatg |
946469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 497
Target Start/End: Original strand, 829 - 871
Alignment:
| Q |
455 |
agccagatgactacagatagtttcctgacaatgtacagtcaaa |
497 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||| |||||| |
|
|
| T |
829 |
agccagacgactacagatggtttcctgacaatgtactgtcaaa |
871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University