View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13740_low_7 (Length: 472)

Name: NF13740_low_7
Description: NF13740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13740_low_7
NF13740_low_7
[»] chr4 (4 HSPs)
chr4 (20-455)||(32224113-32224549)
chr4 (357-450)||(32229308-32229399)
chr4 (125-179)||(32229264-32229318)
chr4 (216-267)||(38219156-38219208)
[»] chr1 (8 HSPs)
chr1 (319-357)||(10449447-10449485)
chr1 (321-359)||(50754855-50754893)
chr1 (321-357)||(28045450-28045486)
chr1 (321-357)||(28739304-28739340)
chr1 (322-357)||(9884973-9885008)
chr1 (321-357)||(9379949-9379985)
chr1 (322-358)||(15928072-15928108)
chr1 (321-357)||(44801751-44801787)
[»] chr7 (2 HSPs)
chr7 (321-358)||(29681904-29681941)
chr7 (321-355)||(17272830-17272864)
[»] chr6 (6 HSPs)
chr6 (187-267)||(28581810-28581891)
chr6 (321-357)||(2543735-2543771)
chr6 (321-357)||(16193852-16193888)
chr6 (319-358)||(369540-369579)
chr6 (321-357)||(11448188-11448224)
chr6 (321-357)||(28581731-28581767)
[»] chr3 (5 HSPs)
chr3 (322-363)||(31342130-31342171)
chr3 (321-357)||(22893891-22893927)
chr3 (321-350)||(29081722-29081751)
chr3 (180-267)||(32385436-32385525)
chr3 (321-357)||(11512518-11512554)
[»] chr2 (3 HSPs)
chr2 (321-357)||(12918664-12918700)
chr2 (321-357)||(39819194-39819230)
chr2 (322-350)||(5095756-5095784)
[»] scaffold0343 (1 HSPs)
scaffold0343 (320-358)||(12225-12263)
[»] scaffold0047 (1 HSPs)
scaffold0047 (321-357)||(13404-13440)
[»] chr8 (1 HSPs)
chr8 (321-357)||(1605046-1605082)
[»] chr5 (2 HSPs)
chr5 (321-357)||(5215560-5215596)
chr5 (302-350)||(19417442-19417490)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 455
Target Start/End: Original strand, 32224113 - 32224549
Alignment:
Q  20 tttaaaagaatagtgatgtgccgacatacgcaaacaatatgtttcaaaggccacgtcttcaatactgtannnnnnn--atctatgagtggatatggtaga 117  Q
    ||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||         ||||||||||||||||||||||    
T  32224113 tttaaaagaatagggatatgccgacatacgcaaacagtatgtttgaaaggccacgtcttcaatactgtatttttttttatctatgagtggatatggtaga 32224212  T
Q  118 cccatattattaaaatcttcaaccacaaattcagtagatattttctcttggcaaaaaatcacgggtagaacttgcgtgatatt-tggttgatgatattgt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||| |||||||||    
T  32224213 cccatattattaaaatcttcaaccacaaattcagtagatattttctcttggcaaaaaatctcgggtagaacttgcgtgacattgtggttggtgatattgt 32224312  T
Q  217 gatattgatcaactataatatta-aagtgtctttcttctttcttttttacaannnnnnnnnnngtttctttgtacatgtgtgataatgtaattgaccaat 315  Q
    || |||||||||||| ||| | | |||| |||||||||||||||||| ||||            ||| |||||||| |||||||||||| ||||||||||    
T  32224313 gacattgatcaactacaatgtcacaagtatctttcttctttctttttgacaatattttttta--tttttttgtacacgtgtgataatgtgattgaccaat 32224410  T
Q  316 atcgtcaatgtcaccaaccacaatatcacccaagtattatccaaaaaatcacccttccctcgtattataaataaatgttcaagtcttgaagaaagtaagc 415  Q
    ||||||||| |||||||||| ||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32224411 atcgtcaatatcaccaaccataatatcaaccaattattatccaaaa-atcacccttccctcgtattataaataaatgttcaagtcttgaagaaagtaagc 32224509  T
Q  416 cctatcatcattcagatactcattacttttaaacaacaaa 455  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32224510 cctatcatcattcagatactcattacttttaaacaacaaa 32224549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 357 - 450
Target Start/End: Original strand, 32229308 - 32229399
Alignment:
Q  357 caaaaaatcacccttccctcgtattataaataaatgttcaagtcttgaagaaagtaagccctatcatcattcagatactcattacttttaaaca 450  Q
    |||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||  || |||  ||||| ||| ||||||||||||||||    
T  32229308 caaaaaatcacccttccctcatattataaataacagttcaagtcttgaagaaagtaag--ctttcaaaattcatatattcattacttttaaaca 32229399  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 32229264 - 32229318
Alignment:
Q  125 tattaaaatcttcaaccacaaattcagtagatattttctcttggcaaaaaatcac 179  Q
    ||||||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  32229264 tattaaaatctgcaactacaaattccgtagatattttctctttgcaaaaaatcac 32229318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 38219208 - 38219156
Alignment:
Q  216 tgatattgatcaactataatatta-aagtgtctttcttctttcttttttacaa 267  Q
    |||||||||||||||| ||| ||| ||||| ||||||||||||| ||||||||    
T  38219208 tgatattgatcaactacaatgttacaagtgactttcttctttctcttttacaa 38219156  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 357
Target Start/End: Complemental strand, 10449485 - 10449447
Alignment:
Q  319 gtcaatgtcaccaaccacaatatcacccaagtattatcc 357  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  10449485 gtcaatgtcaccaaccacaatgtcacccaagtattatcc 10449447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 50754855 - 50754893
Alignment:
Q  321 caatgtcaccaaccacaatatcacccaagtattatccaa 359  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  50754855 caatgtcaccaaccacaatgtcacccaagtattatccaa 50754893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 28045450 - 28045486
Alignment:
Q  321 caatgtcaccaaccacaatatcacccaagtattatcc 357  Q
    ||||||||||||||||||| |||||||||||||||||    
T  28045450 caatgtcaccaaccacaatgtcacccaagtattatcc 28045486  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 28739340 - 28739304
Alignment:
Q  321 caatgtcaccaaccacaatatcacccaagtattatcc 357  Q
    |||| ||||||||||||||||||||||||||||||||    
T  28739340 caatatcaccaaccacaatatcacccaagtattatcc 28739304  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 357
Target Start/End: Original strand, 9884973 - 9885008
Alignment:
Q  322 aatgtcaccaaccacaatatcacccaagtattatcc 357  Q
    ||||||||||||||||||||||||||||||| ||||    
T  9884973 aatgtcaccaaccacaatatcacccaagtatcatcc 9885008  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 9379949 - 9379985
Alignment:
Q  321 caatgtcaccaaccacaatatcacccaagtattatcc 357  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  9379949 caatgtcaccaaccacaatgtcacccaaatattatcc 9379985  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 358
Target Start/End: Complemental strand, 15928108 - 15928072
Alignment:
Q  322 aatgtcaccaaccacaatatcacccaagtattatcca 358  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  15928108 aatgtcaccaatcacaatgtcacccaagtattatcca 15928072  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 44801787 - 44801751
Alignment:
Q  321 caatgtcaccaaccacaatatcacccaagtattatcc 357  Q
    |||||||| |||||||||||||||| |||||||||||    
T  44801787 caatgtcatcaaccacaatatcacctaagtattatcc 44801751  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 321 - 358
Target Start/End: Original strand, 29681904 - 29681941
Alignment:
Q  321 caatgtcaccaaccacaatatcacccaagtattatcca 358  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  29681904 caatgtcaccaaccacaatgtcacccaagtattatcca 29681941  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 355
Target Start/End: Original strand, 17272830 - 17272864
Alignment:
Q  321 caatgtcaccaaccacaatatcacccaagtattat 355  Q
    ||||||||||||||||||| |||||||||||||||    
T  17272830 caatgtcaccaaccacaatgtcacccaagtattat 17272864  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 267
Target Start/End: Complemental strand, 28581891 - 28581810
Alignment:
Q  187 acttgcgtgatatttggttgatgatattgtgatattgatcaactataatatta-aagtgtctttcttctttcttttttacaa 267  Q
    ||||| ||||||| |||||||||| ||||||||||||| ||||   ||||| | ||||||||||||||||||| ||| ||||    
T  28581891 acttgagtgatatgtggttgatgacattgtgatattgaccaacatcaatatcacaagtgtctttcttctttctctttcacaa 28581810  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 2543771 - 2543735
Alignment:
Q  321 caatgtcaccaaccacaatatcacccaagtattatcc 357  Q
    ||||||||||||||||||| |||||||||||||||||    
T  2543771 caatgtcaccaaccacaatgtcacccaagtattatcc 2543735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 16193852 - 16193888
Alignment:
Q  321 caatgtcaccaaccacaatatcacccaagtattatcc 357  Q
    ||||||||||||||||||| |||||||||||||||||    
T  16193852 caatgtcaccaaccacaatgtcacccaagtattatcc 16193888  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 369540 - 369579
Alignment:
Q  319 gtcaatgtcaccaaccacaatatcacccaagtattatcca 358  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  369540 gtcaatgtcaccaaccacaatgtcactcaagtattatcca 369579  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 11448188 - 11448224
Alignment:
Q  321 caatgtcaccaaccacaatatcacccaagtattatcc 357  Q
    |||| |||||||||||||| |||||||||||||||||    
T  11448188 caatatcaccaaccacaatgtcacccaagtattatcc 11448224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 28581767 - 28581731
Alignment:
Q  321 caatgtcaccaaccacaatatcacccaagtattatcc 357  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  28581767 caatgtcaccaaccacaatgtcagccaagtattatcc 28581731  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 363
Target Start/End: Original strand, 31342130 - 31342171
Alignment:
Q  322 aatgtcaccaaccacaatatcacccaagtattatccaaaaaa 363  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  31342130 aatgtcaccaaccacaatgtcacccaaatattatccaaaaaa 31342171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 22893927 - 22893891
Alignment:
Q  321 caatgtcaccaaccacaatatcacccaagtattatcc 357  Q
    ||||||||||||||||||| |||||||||||||||||    
T  22893927 caatgtcaccaaccacaatgtcacccaagtattatcc 22893891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 350
Target Start/End: Original strand, 29081722 - 29081751
Alignment:
Q  321 caatgtcaccaaccacaatatcacccaagt 350  Q
    ||||||||||||||||||||||||||||||    
T  29081722 caatgtcaccaaccacaatatcacccaagt 29081751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 32385525 - 32385436
Alignment:
Q  180 gggtagaacttgcgtgatatt-tggttgatgatattgtgatattgatcaactataatatt-aaagtgtctttcttctttcttttttacaa 267  Q
    |||||| ||||  |||||||| |||||||||||||||||||||||  |||| | ||| || ||||||| |||||||||||| ||| ||||    
T  32385525 gggtagcacttaggtgatattgtggttgatgatattgtgatattggccaaccacaatgttaaaagtgtttttcttctttctctttcacaa 32385436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 11512518 - 11512554
Alignment:
Q  321 caatgtcaccaaccacaatatcacccaagtattatcc 357  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  11512518 caatgtcaccaaccataatgtcacccaagtattatcc 11512554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 12918664 - 12918700
Alignment:
Q  321 caatgtcaccaaccacaatatcacccaagtattatcc 357  Q
    ||||||||||||||||||| |||||||||||||||||    
T  12918664 caatgtcaccaaccacaatgtcacccaagtattatcc 12918700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 39819194 - 39819230
Alignment:
Q  321 caatgtcaccaaccacaatatcacccaagtattatcc 357  Q
    ||||||||||||||||||| |||||||||||||||||    
T  39819194 caatgtcaccaaccacaatgtcacccaagtattatcc 39819230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 350
Target Start/End: Complemental strand, 5095784 - 5095756
Alignment:
Q  322 aatgtcaccaaccacaatatcacccaagt 350  Q
    |||||||||||||||||||||||||||||    
T  5095784 aatgtcaccaaccacaatatcacccaagt 5095756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 12263 - 12225
Alignment:
Q  320 tcaatgtcaccaaccacaatatcacccaagtattatcca 358  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  12263 tcaatgtcaccaactacaatgtcacccaagtattatcca 12225  T

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Target: scaffold0047 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 13404 - 13440
Alignment:
Q  321 caatgtcaccaaccacaatatcacccaagtattatcc 357  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  13404 caatgtgaccaaccacaatatcacccaagtgttatcc 13440  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 1605046 - 1605082
Alignment:
Q  321 caatgtcaccaaccacaatatcacccaagtattatcc 357  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  1605046 caatgtcaccaactacaatgtcacccaagtattatcc 1605082  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 5215596 - 5215560
Alignment:
Q  321 caatgtcaccaaccacaatatcacccaagtattatcc 357  Q
    |||||| |||||||||||| |||||||||||||||||    
T  5215596 caatgttaccaaccacaatgtcacccaagtattatcc 5215560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 19417490 - 19417442
Alignment:
Q  302 tgtaattgaccaatatcgtcaatgtcaccaaccacaatatcacccaagt 350  Q
    |||| ||||||||| ||  ||||||||||||||||||| ||||||||||    
T  19417490 tgtagttgaccaatgtcaccaatgtcaccaaccacaatgtcacccaagt 19417442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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