View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13741_high_19 (Length: 266)
Name: NF13741_high_19
Description: NF13741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13741_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 56379022 - 56379207
Alignment:
| Q |
18 |
ataaatccatccgtctgtacttgttgtggtaatttaattagtttaggaatattgcatttgcatattaattaattaattacgtacttgttttgagttgagt |
117 |
Q |
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| T |
56379022 |
ataaatccatccgtctgtacttgttgtggtaatttaattagtttaggaatattgcatttgcat----attaattaattacgtacttgttttgagttgagt |
56379117 |
T |
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| Q |
118 |
gatgtttctctcctctcctcctcagggattaacaattcatcatgcatggactctgagaggccgatttgtttgtattactattactattactatta |
212 |
Q |
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| T |
56379118 |
catgtttctctcct---ctcctcagggattaacaattcatcatgcatggactct--gaggccgatttgttcgtattactattactattactatta |
56379207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 56379211 - 56379274
Alignment:
| Q |
192 |
ttactattactattactattagaatacaattacattacataaaacccttttctcttttctctct |
255 |
Q |
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| T |
56379211 |
ttactattactattactattagaatactattacattacataaaacccttttctcttttctctct |
56379274 |
T |
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