View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13741_high_25 (Length: 215)
Name: NF13741_high_25
Description: NF13741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13741_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 31750354 - 31750540
Alignment:
| Q |
18 |
aaaaataaatatttcatgttttagtagaaaactgaatggtttatctcaatgtgtgatgttcatattggcgaagctcttagtctactattagcattaggac |
117 |
Q |
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| T |
31750354 |
aaaaataaatatttcattttttagtagaaaactaaatggtttatctcaatgtgtgatgttcatattggtgaagctcttagtctgctattagcattaggac |
31750453 |
T |
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| Q |
118 |
ggattcatgaattaagttgggacacttaattttgagatttattctaaaagagttgttgataatcttttatcccaaaacatgatgatg |
204 |
Q |
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| T |
31750454 |
gggttcatgaattaagttgggacacttaattttgagatttattctaaaagagttgttgataatcttttatcccaaaacatgatgatg |
31750540 |
T |
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Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 45 - 201
Target Start/End: Complemental strand, 17093200 - 17093042
Alignment:
| Q |
45 |
aaaactgaatggtttatctcaatgtgtgatgttcatattggcgaagctcttagtctactattagcattaggacggattcatgaatta-agttgggacac- |
142 |
Q |
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|||| ||||||||||| |||||||||||||||||||||| ||||||| | ||||| ||| | | |||||| || ||||||| || ||||||||| | |
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| T |
17093200 |
aaaagtgaatggtttagtccaatgtgtgatgttcatattggtgaagctcgtggtctattatcatctttaggatgggttcatgagctagagttgggacccg |
17093101 |
T |
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| Q |
143 |
ttaattttgagatttattctaaaagagttgttgataatcttttatcccaaaacatgatg |
201 |
Q |
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| T |
17093100 |
tcaattttgagctcgattctaaaagagttgttgatagatttttatccccaaacatgatg |
17093042 |
T |
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