View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13741_high_3 (Length: 522)
Name: NF13741_high_3
Description: NF13741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13741_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 23 - 510
Target Start/End: Original strand, 23077089 - 23077580
Alignment:
| Q |
23 |
tatatataaacaaattaaagatgaacagaaagtagacaaactctttattgggtagtaaaccattgatcatggtttcaataata----taataataacaag |
118 |
Q |
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||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||| |
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| T |
23077089 |
tatatataagaaaaataaagatgaacaaaaagtagacaaactctttattgggtagtaaaccattgatcagggtttcaataataataattataataacaag |
23077188 |
T |
|
| Q |
119 |
tgtatacataataatcaaattagttaatgcacaatcaccttgatccttgtcaagaatctagtnnnnnnnttaagataccccttcaaattttcttcttctc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23077189 |
tgtatacataataatcaaattagttaatgcacaatcaccttgatccttgtcaagaatctagtgaaaaaattaagataccccttcaaattttcttcttctc |
23077288 |
T |
|
| Q |
219 |
aagtttgctatttcattccacaacaatgaatgaaattataattaccttcacttaagaaattcaggaagttcaaagttggttgcatcctcaacttcattga |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23077289 |
aagtttgctatttcattccacaacaatgaatgaaattataattaccttcacttaagaaattcaggaagttcaaagttggtttcatcctcaacttcattga |
23077388 |
T |
|
| Q |
319 |
gccaaccatacttctccatgaaaggattgatcaaagactctggtggataatcatcaatacaatcttcccatacatttgcatctccaacatctttcatcac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23077389 |
gccaaccatacttctccatgaaaggattgatcaaagactctggtggataatcatcaatacaatcttcccatacatttgcatctccaacatctttcatcac |
23077488 |
T |
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| Q |
419 |
ttcccataagcaactattgcatttaaatccagcaccaaagcttatcataaaaactctatcaccnnnnnnnagcctcttttttgcttccatgt |
510 |
Q |
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| T |
23077489 |
ttcccataagcaactattgcatttaaatccagcaccaaagcttatcataaaaactctatcacctttttttagcctctttttggcttccatgt |
23077580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 222 - 510
Target Start/End: Original strand, 23072688 - 23072975
Alignment:
| Q |
222 |
tttgctatttcattccacaacaat-gaatgaaattataattaccttcacttaagaaattcaggaagttcaaagttggttgcatcctcaacttcattgagc |
320 |
Q |
| |
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|||| ||||||||||||||| || ||||||||||| ||||||||||||| |||||||||||||| ||| ||||| | | ||||||||||||||||| | |
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| T |
23072688 |
tttggtatttcattccacaatgattgaatgaaatta--attaccttcacttgagaaattcaggaagatcatagttgttaggatcctcaacttcattgacc |
23072785 |
T |
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| Q |
321 |
caaccatacttctccatgaaaggattgatcaaagactctggtggataatcatcaatacaatcttcccatacatttgcatctccaacatctttcatcactt |
420 |
Q |
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|||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23072786 |
caactatacttctccatgaaaggattgaccaaagactttggtggataattatcaatacaatcttcccaaacatttgcatctccaacatctttcatcactt |
23072885 |
T |
|
| Q |
421 |
cccataagcaactattgcatttaaatccagcaccaaagcttatcataaaaactctatcaccnnnnnnnagcctcttttttgcttccatgt |
510 |
Q |
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| T |
23072886 |
cccataagcaactattgcatttaaatccagcaccaaagcttatcataaatactctatcacctttcttgagcctcttttttgcttccatgt |
23072975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 266 - 510
Target Start/End: Complemental strand, 23111606 - 23111362
Alignment:
| Q |
266 |
tcacttaagaaattcaggaagttcaaagttggttgcatcctcaacttcattgagccaaccatacttctccatgaaaggattgatcaaagactctggtgga |
365 |
Q |
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|||||||||||| |||||||||||| | ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
23111606 |
tcacttaagaaaatcaggaagttcataattgtttggatcctcaacttcattgacccaaccatacttctccatgaaaggattgaccaaagacttaggtgga |
23111507 |
T |
|
| Q |
366 |
taatcatcaatacaatcttcccatacatttgcatctccaacatctttcatcacttcccataagcaactattgcatttaaatccagcaccaaagcttatca |
465 |
Q |
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| T |
23111506 |
taattatcaatacaatcttcccaaacatttgcatctccaacatctttcatcacttcccataagcaactattgcatttaaatccagcaccaaagcttatca |
23111407 |
T |
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| Q |
466 |
taaaaactctatcaccnnnnnnnagcctcttttttgcttccatgt |
510 |
Q |
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|||| ||||||||||| |||||||||||||||||||||| |
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| T |
23111406 |
taaatactctatcacctttcttgagcctcttttttgcttccatgt |
23111362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 481
Target Start/End: Original strand, 41079965 - 41080043
Alignment:
| Q |
403 |
caacatctttcatcacttcccataagcaactattgcatttaaatccagcaccaaagcttatcataaaaactctatcacc |
481 |
Q |
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|||||||| |||| |||||||| | ||||| ||||||||||| |||||||| || |||||||| || ||||| ||||| |
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| T |
41079965 |
caacatctctcattacttcccaataacaactgttgcatttaaagccagcacctaaacttatcatcaatactctctcacc |
41080043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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