View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13741_high_6 (Length: 471)
Name: NF13741_high_6
Description: NF13741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13741_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 55180005 - 55179772
Alignment:
| Q |
20 |
cctgcatattgaattgcaattgcatgctaatgatttattgtcacaataattgatcctaaatagaaaacacgcattagcatctgtacgtgcnnnnnnn-ct |
118 |
Q |
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| T |
55180005 |
cctgcatattgaattgcaattgcatgctaatgatttattgtcacaataattgatcctaaatagaaaacacgcattagcatctgtacgtgcttttttttct |
55179906 |
T |
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| Q |
119 |
ctcactttcattgtaataaaaaatattcaatttcagtaataaatatatttttatttgcattcacaaaaaagattgtatttctaattatatttttcagcag |
218 |
Q |
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| T |
55179905 |
ctcactttcattgtaataaaaaatattcaatttcagtaataaatatatttttatttgcattcacaaaaaagattgtatttctaattatatttttcagcag |
55179806 |
T |
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| Q |
219 |
catttgacactccaacaaagtctatatattgtac |
252 |
Q |
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| T |
55179805 |
catttgacactccaaaaaagtctatatattgtac |
55179772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 311 - 459
Target Start/End: Complemental strand, 55179676 - 55179528
Alignment:
| Q |
311 |
gcctaagcttatgtgttggaattgaggttattaaccaaggagctagtggggatgttgaggttcttaactataatgttcttgactatggtgccaaaggtga |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
55179676 |
gcctaagcttatgtgttggaattgaggttattaaccaaggagctagtggggatgttgaggttcttaactataatgttcttgactatgctgccaaagttga |
55179577 |
T |
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| Q |
411 |
tggcgaaaccgatgattcggatgtatgtaatttttactattgtcatatt |
459 |
Q |
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| T |
55179576 |
tggcgaaactgatgattcggatgtatgtaatttttactattgtcatatt |
55179528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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