View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13741_high_7 (Length: 465)
Name: NF13741_high_7
Description: NF13741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13741_high_7 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 449
Target Start/End: Original strand, 49971838 - 49972272
Alignment:
| Q |
13 |
aatatctgggtcctcccaatgtgccctgcataannnnnnncctttatgattttcatcgaaattgagaatgagttgcgagaagaagagaatgattgtgacg |
112 |
Q |
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| T |
49971838 |
aatatctgggtcctcccaatgtgccctgcataatttttttcctttatgattttcatcgaaattgagaatgagttgcgagaagaagaggatgattgtgacg |
49971937 |
T |
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| Q |
113 |
gcggcattttaggtaggaagaaaagaaagaatgtgaataagaagtgaatctgggagagcactgattctgnnnnnnnnnnnnnnnnnnngaattggaattg |
212 |
Q |
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| T |
49971938 |
gcggcatttttggtaggaagaaaagaaagaatgtgaataagaagtgaatctgggagagcactgattctgtcttcttcttctt------gaattggaattg |
49972031 |
T |
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| Q |
213 |
aatgtcctagccgccggggggacatgattattgcaatatcatatgactcttgataagagtata----taaagaagagtcactcctcatcatacaaatcaa |
308 |
Q |
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| T |
49972032 |
aatgtcctagccgccggggggacatgattattgcaatatcatatgactcttgataagagtatatatataaagaagagtcactcctcatcatacaaatcaa |
49972131 |
T |
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| Q |
309 |
ttttcttctttatgtcttgcaactccctaacaatatatccctaacttgtcttgcaagtacgtataattgttattctagagcataaatacctacttaggcc |
408 |
Q |
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| T |
49972132 |
ttttcttctttatgtcttgcaactccctaacaatatatccctaacttgtcttgcatgtacgtataattgttattctagagcataaatacctacttaggcc |
49972231 |
T |
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| Q |
409 |
cctctctatcaataaccgcatatacaaattcttaaacatat |
449 |
Q |
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| T |
49972232 |
cctctctatcaataaccgcatatacaaattcttaaacatat |
49972272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 3910 - 3963
Alignment:
| Q |
128 |
ggaagaaaagaaagaatgtgaataagaagtgaatctgggagagcactgattctg |
181 |
Q |
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| T |
3910 |
ggaagaaaagaaagaatgtgataaagaagtgaatccggtagagcactgattctg |
3963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 5456 - 5509
Alignment:
| Q |
128 |
ggaagaaaagaaagaatgtgaataagaagtgaatctgggagagcactgattctg |
181 |
Q |
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| T |
5456 |
ggaagaaaagaaagaatgtgataaagaagtgaatccggtagagcactgattctg |
5509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 43288293 - 43288339
Alignment:
| Q |
257 |
gactcttgataagagtatataaagaagagtcactcctcatcatacaa |
303 |
Q |
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| T |
43288293 |
gactcttgataagagtttataaagaggaggcactcctcatcttacaa |
43288339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 8902382 - 8902424
Alignment:
| Q |
253 |
atatgactcttgataagagtatataaagaagagtcactcctca |
295 |
Q |
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| T |
8902382 |
atatgactcttgataagagtttataaagatgagacactcctca |
8902424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 303
Target Start/End: Complemental strand, 10542137 - 10542092
Alignment:
| Q |
258 |
actcttgataagagtatataaagaagagtcactcctcatcatacaa |
303 |
Q |
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| T |
10542137 |
actcttgataagagtttataaagaggagacactcctcatcttacaa |
10542092 |
T |
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