View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13741_high_8 (Length: 425)

Name: NF13741_high_8
Description: NF13741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13741_high_8
NF13741_high_8
[»] chr2 (8 HSPs)
chr2 (182-407)||(31292046-31292272)
chr2 (234-402)||(31255116-31255284)
chr2 (248-375)||(31281330-31281457)
chr2 (248-344)||(31374287-31374383)
chr2 (287-375)||(31306267-31306357)
chr2 (222-363)||(31419422-31419567)
chr2 (287-351)||(31320735-31320799)
chr2 (242-346)||(31386279-31386383)
[»] chr8 (1 HSPs)
chr8 (240-316)||(3300515-3300591)
[»] chr5 (1 HSPs)
chr5 (240-316)||(38837177-38837253)
[»] chr7 (1 HSPs)
chr7 (154-182)||(45830892-45830920)


Alignment Details
Target: chr2 (Bit Score: 159; Significance: 2e-84; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 182 - 407
Target Start/End: Original strand, 31292046 - 31292272
Alignment:
Q  182 atagttttattacaacataaatgaagtacattgttta-ttgaaggaatcatactagtagtagaaaaataacttacacgtcaacgttctttttccaagcag 280  Q
    ||||| ||||| ||||||||||||||||  ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31292046 atagtattattgcaacataaatgaagtatgttgttcaattgaaggaatcatactagtagtagaaaaataacttacacgtcaacgttctttttccaagcag 31292145  T
Q  281 gcacaagtccagtgagaagttttccagttaaaaatctatcataagagtatatcaaaatattaatatgcaaatcttaatatttattgaggtgaacacaatt 380  Q
    ||||   |||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||    
T  31292146 gcaccgatccagtgagaaggtttccagttaaaaatctatcataaaagtatatcaagatattaatatgcaaagcttaatagttattgaggtgaacacaatt 31292245  T
Q  381 gaaaataagctaatcacacccaattat 407  Q
    | |||||||||||||||| ||||||||    
T  31292246 ggaaataagctaatcacaaccaattat 31292272  T

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Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 234 - 402
Target Start/End: Original strand, 31255116 - 31255284
Alignment:
Q  234 tagtagtagaaaaataacttacacgtcaacgttctttttccaagcaggcacaagtccagtgagaagttttccagttaaaaatctatcataagagtatatc 333  Q
    ||||| ||||| ||||||||||||||| | |||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||| ||||||||    
T  31255116 tagtattagaacaataacttacacgtcgatgttctttttccaagcaggcaccgatccagtgagaaggtttccagttaaaaatctatcataaaagtatatc 31255215  T
Q  334 aaaatattaatatgcaaatcttaatatttattgaggtgaacacaattgaaaataagctaatcacaccca 402  Q
    || ||||||||||||||| ||||||||||||||||||||| |  | || ||||||||||||||||||||    
T  31255216 aagatattaatatgcaaagcttaatatttattgaggtgaaaattaatggaaataagctaatcacaccca 31255284  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 375
Target Start/End: Original strand, 31281330 - 31281457
Alignment:
Q  248 taacttacacgtcaacgttctttttccaagcaggcacaagtccagtgagaagttttccagttaaaaatctatcataagagtatatcaaaatattaatatg 347  Q
    |||||||| ||| ||| |||  |||||| | |||||| | |||||||||||| |||||| ||||||||||| ||||| || ||||||| |||||| | |     
T  31281330 taacttactcgttaactttcggtttccaggaaggcaccaatccagtgagaaggtttccacttaaaaatctaccataaaagaatatcaagatattattttc 31281429  T
Q  348 caaatcttaatatttattgaggtgaaca 375  Q
    |||| |||||||||||||||||||||||    
T  31281430 caaagcttaatatttattgaggtgaaca 31281457  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 344
Target Start/End: Original strand, 31374287 - 31374383
Alignment:
Q  248 taacttacacgtcaacgttctttttccaagcaggcacaagtccagtgagaagttttccagttaaaaatctatcataagagtatatcaaaatattaat 344  Q
    |||||||||||| || ||||||| |||| | |||||| |||||||||||    |||||||||||||||||| ||||| || ||||||||||||||||    
T  31374287 taacttacacgtaaatgttctttctccatgaaggcaccagtccagtgaggttgtttccagttaaaaatctaccataaaagaatatcaaaatattaat 31374383  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 287 - 375
Target Start/End: Original strand, 31306267 - 31306357
Alignment:
Q  287 gtccagtgagaagttttccagttaaaaatctatcataagagtatatcaaaatattaatatgcaaatct--taatatttattgaggtgaaca 375  Q
    ||||||||||||| ||||| || ||||||||||||||| || ||||||| |||||||| |||||| ||  |||||||||| ||||||||||    
T  31306267 gtccagtgagaaggtttcctgtcaaaaatctatcataatagaatatcaagatattaatgtgcaaagcttataatatttatagaggtgaaca 31306357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 222 - 363
Target Start/End: Complemental strand, 31419567 - 31419422
Alignment:
Q  222 aaggaatcatactagtagta---gaaaaataacttacacgtcaacgttctttttccaagcaggcacaagtccagtgagaagttttccagttaaaaatcta 318  Q
    |||||||||| |||||||||   |||| |||||| |||||   ||||||||| |||||| ||||||  ||||||| ||||| ||||| ||||||||||||    
T  31419567 aaggaatcatgctagtagtattagaaagataactcacacgctcacgttctttctccaagaaggcactggtccagtcagaaggtttccggttaaaaatcta 31419468  T
Q  319 tcat-aagagtatatcaaaatattaatatgcaaatcttaatattta 363  Q
     ||| || || ||||||| |||||||||| |||| || ||||||||    
T  31419467 ccataaaaagaatatcaagatattaatatacaaagctcaatattta 31419422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 31320735 - 31320799
Alignment:
Q  287 gtccagtgagaagttttccagttaaaaatctatcataagagtatatcaaaatattaatatgcaaa 351  Q
    ||||||||||||| ||||| || || |||||||||||| || |||||||  ||||| ||||||||    
T  31320735 gtccagtgagaaggtttccggtcaagaatctatcataaaagaatatcaaggtattagtatgcaaa 31320799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 346
Target Start/End: Original strand, 31386279 - 31386383
Alignment:
Q  242 gaaaaataacttacacgtcaacgttctttttccaagcaggcacaagtccagtgagaagttttccagttaaaaatctatcataagagtatatcaaaatatt 341  Q
    |||| |||||| |||||| |||  | ||| |||||  ||||||  ||||||||||||| ||||| |||||||||||| || || || ||||||  |||||    
T  31386279 gaaagataactcacacgtaaacaatttttctccaataaggcacttgtccagtgagaaggtttccggttaaaaatctaccaaaaaagaatatcatgatatt 31386378  T
Q  342 aatat 346  Q
    |||||    
T  31386379 aatat 31386383  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 3300591 - 3300515
Alignment:
Q  240 tagaaaaataacttacacgtcaacgttctttttccaagcaggcacaagtccagtgagaagttttccagttaaaaatc 316  Q
    ||||| || |||||||||||| | |||||||||||||||||| ||   |||||| ||||| ||||||||||||||||    
T  3300591 tagaacaagaacttacacgtcgatgttctttttccaagcaggtaccgatccagtaagaaggtttccagttaaaaatc 3300515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 38837253 - 38837177
Alignment:
Q  240 tagaaaaataacttacacgtcaacgttctttttccaagcaggcacaagtccagtgagaagttttccagttaaaaatc 316  Q
    ||||| || |||||||||||| | |||||||||||||||||| ||   |||||| ||||| ||||||||||||||||    
T  38837253 tagaacaagaacttacacgtcgatgttctttttccaagcaggtaccgatccagtaagaaggtttccagttaaaaatc 38837177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 182
Target Start/End: Complemental strand, 45830920 - 45830892
Alignment:
Q  154 caaaagcaacaaaatttatcagatcaaaa 182  Q
    |||||||||||||||||||||||||||||    
T  45830920 caaaagcaacaaaatttatcagatcaaaa 45830892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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