View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13741_low_1 (Length: 677)

Name: NF13741_low_1
Description: NF13741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13741_low_1
NF13741_low_1
[»] chr1 (7 HSPs)
chr1 (9-659)||(31374803-31375453)
chr1 (239-357)||(13142865-13142983)
chr1 (234-356)||(2753024-2753145)
chr1 (217-282)||(40707722-40707787)
chr1 (289-357)||(32018688-32018756)
chr1 (217-341)||(38669510-38669634)
chr1 (219-357)||(51127088-51127226)
[»] chr3 (8 HSPs)
chr3 (217-342)||(50385109-50385234)
chr3 (217-357)||(43107846-43107986)
chr3 (210-357)||(4957566-4957713)
chr3 (217-357)||(9798530-9798670)
chr3 (254-350)||(40709211-40709307)
chr3 (217-323)||(16930284-16930390)
chr3 (296-341)||(6130650-6130695)
chr3 (220-301)||(54739132-54739213)
[»] chr4 (14 HSPs)
chr4 (213-357)||(51084651-51084795)
chr4 (221-347)||(52254792-52254918)
chr4 (217-345)||(54234529-54234656)
chr4 (237-357)||(1180086-1180206)
chr4 (243-357)||(5382210-5382326)
chr4 (217-338)||(13610822-13610943)
chr4 (254-355)||(33880850-33880951)
chr4 (217-359)||(34458637-34458779)
chr4 (217-357)||(47681622-47681762)
chr4 (217-348)||(43137085-43137216)
chr4 (263-333)||(35452022-35452092)
chr4 (237-341)||(15521755-15521859)
chr4 (258-346)||(21680562-21680649)
chr4 (297-357)||(40711687-40711747)
[»] chr2 (12 HSPs)
chr2 (213-338)||(30618154-30618279)
chr2 (217-349)||(19090296-19090428)
chr2 (217-357)||(17913881-17914021)
chr2 (237-357)||(30378310-30378429)
chr2 (217-343)||(34640498-34640624)
chr2 (213-341)||(41533370-41533498)
chr2 (213-322)||(5306088-5306197)
chr2 (237-350)||(15609735-15609848)
chr2 (408-472)||(38129470-38129533)
chr2 (217-324)||(38119996-38120103)
chr2 (248-337)||(13293540-13293629)
chr2 (433-466)||(37541339-37541372)
[»] scaffold0004 (1 HSPs)
scaffold0004 (217-357)||(35207-35342)
[»] chr5 (12 HSPs)
chr5 (220-357)||(28283642-28283777)
chr5 (217-348)||(34582985-34583116)
chr5 (220-336)||(29454623-29454739)
chr5 (217-349)||(5862688-5862820)
chr5 (217-345)||(40896994-40897122)
chr5 (213-324)||(10542347-10542458)
chr5 (433-472)||(10860101-10860140)
chr5 (222-357)||(16719652-16719787)
chr5 (411-465)||(38822275-38822329)
chr5 (433-470)||(25358480-25358517)
chr5 (305-350)||(37508969-37509014)
chr5 (279-355)||(1669680-1669756)
[»] chr8 (5 HSPs)
chr8 (217-341)||(13582670-13582794)
chr8 (220-336)||(42281202-42281318)
chr8 (220-357)||(29909273-29909410)
chr8 (217-297)||(16576676-16576756)
chr8 (226-318)||(33075279-33075371)
[»] chr7 (9 HSPs)
chr7 (213-323)||(12218636-12218746)
chr7 (244-357)||(35224760-35224874)
chr7 (217-338)||(9626303-9626424)
chr7 (259-350)||(32521128-32521219)
chr7 (217-297)||(5738542-5738622)
chr7 (213-341)||(9823582-9823710)
chr7 (213-341)||(10725507-10725635)
chr7 (421-462)||(27423055-27423096)
chr7 (237-357)||(26425756-26425876)
[»] chr6 (5 HSPs)
chr6 (217-285)||(16166202-16166270)
chr6 (220-341)||(14265804-14265925)
chr6 (238-322)||(17314404-17314488)
chr6 (217-301)||(6138558-6138642)
chr6 (260-355)||(4450678-4450773)
[»] scaffold0591 (1 HSPs)
scaffold0591 (221-357)||(1200-1335)


Alignment Details
Target: chr1 (Bit Score: 643; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 9 - 659
Target Start/End: Original strand, 31374803 - 31375453
Alignment:
Q  9 cacagaaccagtcataccatttgtagcataactcgccttcttgcctgaaacaataacagaaaaaggctcaaagttatatggtaaaaagcaaaacccagat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31374803 cacagaaccagtcataccatttgtagcataactcgccttcttgcctgaaacaataacagaaaaaggctcaaagttatatggtaaaaagcaaaacccagat 31374902  T
Q  109 aaagcagataactacatactacaatccactggtaaattctgttcaacttttacaggaagcaaaattgattctagaattgattttgacgttatttggatgc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31374903 aaagcagataactacatactacaatccactggtaaattctgttcaacttttacaggaagcaaaattgattctagaattgattttgacgttatttggatgc 31375002  T
Q  209 tcttgggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31375003 tcttgggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctc 31375102  T
Q  309 aagctttttaaaaagctcattattttaaataggccaggctaatgcttatcatgctctcaagtataattgatattgcctccagaattggtaatttgaagat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31375103 aagctttttaaaaagctcattattttaaataggccaggctaatgcttatcatgctctcaagtataattgatattgcctccagaattggtaatttgaagat 31375202  T
Q  409 acaatttcgagttttttcctctgaaattgatttttagcctcaaatttattgttcaactcgctttacataatgtcgctgcagaaccaaaagtacacttaat 508  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31375203 acaatttcgagtttcttcctctgaaattgattttcagcctcaaatttattgttcaactcgctttacataatgtcgctgcagaaccaaaagtacacttaat 31375302  T
Q  509 atataacttaccattgtcatcagacgtaatgaaatcaaaatcttgatcatgtgaccgcaccggcgagtcactcctatcaatgaaattcagctgctgagca 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31375303 atataacttaccattgtcatcagacgtaatgaaatcaaaatcttgatcatgtgaccgcaccggcgagtcactcctatcaatgaaattcagctgctgagca 31375402  T
Q  609 accacctgaacaaaaatcacagcacattgacattaaatctggcatcaacag 659  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31375403 accacctgaacaaaaatcacagcacattgacattaaatctggcatcaacag 31375453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 239 - 357
Target Start/End: Complemental strand, 13142983 - 13142865
Alignment:
Q  239 tcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaaat 338  Q
    ||||||||||||| |||||||||||||||| ||| |||| ||||||||| ||||||||||||||| || ||||||||||||||||||||||| |||||||    
T  13142983 tcaggggcctatggcccggcctacttaaagctcgactcgacctagctcgtttattaaataggttaggcacaagctttttaaaaagctcattaatttaaat 13142884  T
Q  339 aggccaggctaatgcttat 357  Q
    |||| ||| ||| ||||||    
T  13142883 aggctaggttaaggcttat 13142865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 234 - 356
Target Start/End: Original strand, 2753024 - 2753145
Alignment:
Q  234 gcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattt 333  Q
    |||||||| ||||||||||||| |||||||||||||| ||||||| | |||||| |||||||||||| || |||||| |||||| || || | |||| ||    
T  2753024 gcccgtcaagggcctatgaccccgcctacttaaagtttggctcggtccagctcgtttattaaataggctaggctcaaacttttt-aatagtttattaatt 2753122  T
Q  334 taaataggccaggctaatgctta 356  Q
    |||||||| ||| ||||||||||    
T  2753123 taaataggtcagactaatgctta 2753145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 40707722 - 40707787
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggccta 282  Q
    |||||||||||||||| |||||||||||||||||| | |||| |||| ||||  ||||||||||||    
T  40707722 tgggaataggccaggccgcccgtcaggggcctatggctcggcttactgaaagcccggctcggccta 40707787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 357
Target Start/End: Complemental strand, 32018756 - 32018688
Alignment:
Q  289 ttattaaataggttatgctcaagctttttaaaaagctcattattttaaataggccaggctaatgcttat 357  Q
    ||||||||||||||| |||||| | ||||||||||||| | | |||||| ||| |||||||| ||||||    
T  32018756 ttattaaataggttaggctcaaaccttttaaaaagctcgtcaatttaaacaggtcaggctaaggcttat 32018688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 341
Target Start/End: Original strand, 38669510 - 38669634
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 316  Q
    |||||||||||||||| || |||||||||||||||    |||||||| ||||  |||  |||||||||||| ||| |||||  || | |||  |||||||    
T  38669510 tgggaataggccaggccgctcgtcaggggcctatggtttggcctactaaaagcccggtccggcctagctcgtttaataaatgagtcaagcttgagctttt 38669609  T
Q  317 taaaaagctcattattttaaatagg 341  Q
    ||||||||  |||| ||||| ||||    
T  38669610 taaaaagcctattaatttaattagg 38669634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 51127226 - 51127088
Alignment:
Q  219 ggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagcttttta 318  Q
    ||||||||||||||  | ||||||||| ||||| | ||||||||| | ||| | | | |||||| |||| ||| |||||  || | ||| ||||||||||    
T  51127226 ggaataggccaggccactcgtcaggggtctatggctcggcctactaatagtccagtttggcctaactcgtttaataaatgtgtcaagcttaagcttttta 51127127  T
Q  319 aaaagctcattattttaaataggccaggctaatgcttat 357  Q
    |||||   |||| ||||| |||| |||||| ||||||||    
T  51127126 aaaaggctattaatttaattaggtcaggcttatgcttat 51127088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 217 - 342
Target Start/End: Original strand, 50385109 - 50385234
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 316  Q
    |||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||| |||| |||| |||||||||||||||  |||||| ||||    
T  50385109 tgggaataggccaggccgctcgtcaggggcctatgacccgacctacttaaagctcggctcgacctaactcgtttattaaataggttagactcaagttttt 50385208  T
Q  317 taaaaagctcattattttaaataggc 342  Q
    |||||||||||||| |||||||||||    
T  50385209 taaaaagctcattaatttaaataggc 50385234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 217 - 357
Target Start/End: Complemental strand, 43107986 - 43107846
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 316  Q
    |||||||||| || || |||| |||  |||||||||| |||||||||||||| ||||||||||||| |||| |||||||||| |||  ||||||||||||    
T  43107986 tgggaataggtcaagccgcccctcaaaggcctatgactcggcctacttaaagatcggctcggcctaactcgtttattaaataagttgagctcaagctttt 43107887  T
Q  317 taaaaagctcattattttaaataggccaggctaatgcttat 357  Q
    ||||||  |||||| |||||||||| |||| ||| ||||||    
T  43107886 taaaaaattcattaatttaaataggtcaggataaagcttat 43107846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 210 - 357
Target Start/End: Original strand, 4957566 - 4957713
Alignment:
Q  210 cttgggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctca 309  Q
    |||||| ||||||||||  |||| || | ||||  | ||||||||||||||||| ||| | ||||||||||||| ||| ||||||||||||| | ||| |    
T  4957566 cttggggtgggaataggttaggccgctcatcagtagtctatgacccggcctactaaaattccggctcggcctagttcgtttattaaataggtaaggctta 4957665  T
Q  310 agctttttaaaaagctcattattttaaataggccaggctaatgcttat 357  Q
    |||||||||||||| || ||| ||||||||||| ||||||| ||||||    
T  4957666 agctttttaaaaagttcgttaatttaaataggctaggctaaggcttat 4957713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 217 - 357
Target Start/End: Complemental strand, 9798670 - 9798530
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 316  Q
    |||||||||||||||||| || ||||||||||||||| ||||||||  ||||||||| |||  |||||||| ||| |||||   ||| |||  |||||||    
T  9798670 tgggaataggccaggctgtccatcaggggcctatgactcggcctacaaaaagttcggttcgatctagctcgtttaataaatgatttaagcttgagctttt 9798571  T
Q  317 taaaaagctcattattttaaataggccaggctaatgcttat 357  Q
    ||||||||   ||| ||||| |||||| |||| | ||||||    
T  9798570 taaaaagccttttaatttaattaggccgggcttaggcttat 9798530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 254 - 350
Target Start/End: Original strand, 40709211 - 40709307
Alignment:
Q  254 ccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaaataggccaggctaa 350  Q
    |||||||||||||||| || |||| | ||||||  ||||||||||||||| ||||||  ||||||||||| |||||| |||||||||| ||| ||||    
T  40709211 ccggcctacttaaagtccgactcgacttagctcatttattaaataggttaggctcaaattttttaaaaaggtcattaatttaaataggtcagactaa 40709307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 16930284 - 16930390
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 316  Q
    |||||||||||||| | | ||||| || | ||||| || ||||||||||||||  | |||||| || |||| |||||| |||||||| ||||||||||||    
T  16930284 tgggaataggccagaccgtccgtcgggagtctatggcctggcctacttaaagtctgactcggcttaactcgtttattatataggttaggctcaagctttt 16930383  T
Q  317 taaaaag 323  Q
     ||||||    
T  16930384 caaaaag 16930390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 6130650 - 6130695
Alignment:
Q  296 ataggttatgctcaagctttttaaaaagctcattattttaaatagg 341  Q
    |||||||| ||||||||||||||||||| |||||| ||||||||||    
T  6130650 ataggttaagctcaagctttttaaaaagttcattaatttaaatagg 6130695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 301
Target Start/End: Original strand, 54739132 - 54739213
Alignment:
Q  220 gaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggt 301  Q
    |||||||| |||| || ||||||||| ||||| ||||||||||| |||||| ||   |||||| |||| ||| |||||||||    
T  54739132 gaataggcgaggccgctcgtcaggggtctatggcccggcctactgaaagtttggtctggcctaactcgtttaataaataggt 54739213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 9e-38; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 213 - 357
Target Start/End: Complemental strand, 51084795 - 51084651
Alignment:
Q  213 gggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagc 312  Q
    ||||||| |||||| |||||   ||||||||||||| ||||||||||||||||| |  |||||| |||||||||| ||||||||||||||| ||||||||    
T  51084795 gggatggaaataggtcaggccatccgtcaggggcctctgacccggcctacttaatgcccggctcagcctagctcgtttattaaataggttaggctcaagc 51084696  T
Q  313 tttttaaaaagctcattattttaaataggccaggctaatgcttat 357  Q
    |||||||||||||||||| ||||||||||| ||||| | ||||||    
T  51084695 tttttaaaaagctcattaatttaaataggctaggctcaggcttat 51084651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 221 - 347
Target Start/End: Original strand, 52254792 - 52254918
Alignment:
Q  221 aataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaa 320  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||  |||||||||||  | | |||||||| ||||||  ||||||||||||| |    
T  52254792 aataggccaggctgctcgtcaggggcctatgacccggcctacctaaagtctggctcggcctaatttgtttattaaacaggttaaactcaagctttttata 52254891  T
Q  321 aagctcattattttaaataggccaggc 347  Q
    |||||||||| ||||||||||| ||||    
T  52254892 aagctcattaatttaaataggctaggc 52254918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 217 - 345
Target Start/End: Complemental strand, 54234656 - 54234529
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 316  Q
    ||||||||| |||| |  |||||||||||||||||||||||||||||||||| ||| ||||   ||||||  || |||||||||||  ||||||||||||    
T  54234656 tgggaatagaccagaccacccgtcaggggcctatgacccggcctacttaaagctcgactcgatgtagctcattttttaaataggtttagctcaagctttt 54234557  T
Q  317 taaaaagctcattattttaaataggccag 345  Q
    ||||||||||||||  |||||||||||||    
T  54234556 taaaaagctcatta-attaaataggccag 54234529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 237 - 357
Target Start/End: Original strand, 1180086 - 1180206
Alignment:
Q  237 cgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaa 336  Q
    ||||||||| |||||| ||| |||||||||||| |  ||||  ||| |||| ||||||||||||| || |||||||||||||||||| |||||| |||||    
T  1180086 cgtcaggggtctatgaaccgccctacttaaagtccaactcgatctaactcgtttattaaataggtaatactcaagctttttaaaaagttcattaatttaa 1180185  T
Q  337 ataggccaggctaatgcttat 357  Q
    |||||| || |||| ||||||    
T  1180186 ataggctagactaaggcttat 1180206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 243 - 357
Target Start/End: Original strand, 5382210 - 5382326
Alignment:
Q  243 gggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagct--cattattttaaatag 340  Q
    ||||||||||||  ||||| |||||| ||||||||||||| |||| || ||||||| |||| |||||||||||||||||| ||  | ||| |||||||||    
T  5382210 gggcctatgaccgagcctatttaaagctcggctcggcctaactcgtttgttaaataagttaggctcaagctttttaaaaaactcgcgttaatttaaatag 5382309  T
Q  341 gccaggctaatgcttat 357  Q
    || ||| ||| ||||||    
T  5382310 gctaggttaaggcttat 5382326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 217 - 338
Target Start/End: Original strand, 13610822 - 13610943
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 316  Q
    |||||||| ||||||||||  |||||||||||||| ||||||||||| |||| ||||| || |||| |||| ||| ||||||||| |  |   |||||||    
T  13610822 tgggaataagccaggctgcttgtcaggggcctatggcccggcctactaaaagctcggcccgacctaactcgtttaataaataggtcaaacatgagctttt 13610921  T
Q  317 taaaaagctcattattttaaat 338  Q
    ||||||||| |||| |||||||    
T  13610922 taaaaagcttattaatttaaat 13610943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 33880850 - 33880951
Alignment:
Q  254 ccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaaataggccaggctaatgc 353  Q
    |||||||||||||||   |  |||||||| |||| |||||||||| |||| |||||| |||||||||||||||||||||| |||||||  ||||||| ||    
T  33880850 ccggcctacttaaagcctgattcggcctaactcgtttattaaatatgttaggctcaaactttttaaaaagctcattatttaaaataggttaggctaacgc 33880949  T
Q  354 tt 355  Q
    ||    
T  33880950 tt 33880951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 217 - 359
Target Start/End: Complemental strand, 34458779 - 34458637
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 316  Q
    |||||||||| ||||| || ||||||||||||||| | ||||||| | ||||||||| |||||||| |||| ||| ||||| ||| |  ||  |||||||    
T  34458779 tgggaataggtcaggccgctcgtcaggggcctatggctcggcctagtaaaagttcgggtcggcctaactcgtttaataaatgggtcaaacttgagctttt 34458680  T
Q  317 taaaaagctcattattttaaataggccaggctaatgcttatca 359  Q
    |||| |||  |||| ||||| ||| ||||||| | ||||||||    
T  34458679 taaagagcctattaatttaattagtccaggcttaagcttatca 34458637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 217 - 357
Target Start/End: Original strand, 47681622 - 47681762
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 316  Q
    ||||| ||||||| || || ||||| ||||||||||  ||||||||| ||||| ||||||||||||||||| ||| ||||| ||| | |||  || ||||    
T  47681622 tgggagtaggccaagccgctcgtcaagggcctatgattcggcctactaaaagtccggctcggcctagctcgtttaataaatgggtcaagcttgagatttt 47681721  T
Q  317 taaaaagctcattattttaaataggccaggctaatgcttat 357  Q
    |||||||   |||| ||||| |||| |||||| | ||||||    
T  47681722 taaaaagtctattaatttaattaggtcaggcttaggcttat 47681762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 217 - 348
Target Start/End: Original strand, 43137085 - 43137216
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 316  Q
    |||||||||||||||  ||  |||||||||||||| | ||||||| | |||   ||||||||||||||||| ||| |||||  || | |||  |||||||    
T  43137085 tgggaataggccaggtcgcttgtcaggggcctatggctcggcctattgaaaacccggctcggcctagctcgtttaataaatgtgtcaagcttgagctttt 43137184  T
Q  317 taaaaagctcattattttaaataggccaggct 348  Q
    |||||| |  |||| ||||| |||||||||||    
T  43137185 taaaaaccctattaatttaattaggccaggct 43137216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 263 - 333
Target Start/End: Original strand, 35452022 - 35452092
Alignment:
Q  263 ttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattt 333  Q
    |||||||| || |||||||| |||| ||||||||||| |||  ||||| ||||||||||||||||| ||||    
T  35452022 ttaaagtttggttcggcctaactcgtttattaaatagattagactcaaactttttaaaaagctcataattt 35452092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 341
Target Start/End: Complemental strand, 15521859 - 15521755
Alignment:
Q  237 cgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaa 336  Q
    ||||||||||||||||| | ||||||| ||||| ||||||| |||| || | ||| ||||| |||||  ||  |||||||||||||||  |||| |||||    
T  15521859 cgtcaggggcctatgactcagcctactaaaagtccggctcgacctaacttgtttaataaatgggttaaacttgagctttttaaaaagcctattaatttaa 15521760  T
Q  337 atagg 341  Q
     ||||    
T  15521759 ttagg 15521755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 346
Target Start/End: Complemental strand, 21680649 - 21680562
Alignment:
Q  258 cctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaaataggccagg 346  Q
    |||||||||||| || |||||||||| ||  |||||| |||||||| | |||||| ||||||||| || |||| |||||||||| ||||    
T  21680649 cctacttaaagtccgactcggcctagttcttttattatataggttaggatcaagc-ttttaaaaaacttattaatttaaataggtcagg 21680562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 40711687 - 40711747
Alignment:
Q  297 taggttatgctcaagctttttaaaaagctcattattttaaataggccaggctaatgcttat 357  Q
    ||||||| | ||||| |||||||||| || ||||||||||||||| |||| ||||||||||    
T  40711687 taggttaggttcaagttttttaaaaaactaattattttaaataggtcaggttaatgcttat 40711747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 213 - 338
Target Start/End: Complemental strand, 30618279 - 30618154
Alignment:
Q  213 gggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagc 312  Q
    |||||||||||||||||| | ||||||| |||||||||| | |||||||||||||| || ||| ||||||||||  ||||||||||||||| ||||||||    
T  30618279 gggatgggaataggccagaccgcccgtccggggcctatggcacggcctacttaaagctcagctaggcctagctcatttattaaataggttaggctcaagc 30618180  T
Q  313 tttttaaaaagctcattattttaaat 338  Q
    ||||||||||||| |||| |||||||    
T  30618179 tttttaaaaagcttattaatttaaat 30618154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 217 - 349
Target Start/End: Complemental strand, 19090428 - 19090296
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 316  Q
    |||||||||| ||||| |  | |||| ||||||||||||  |||||||||||  ||||||||| ||||||| ||||||||||||| | ||||||||||||    
T  19090428 tgggaataggtcaggccgttcctcagaggcctatgacccaacctacttaaagcccggctcggcgtagctcgtttattaaataggtaaggctcaagctttt 19090329  T
Q  317 taaaaagctcattattttaaataggccaggcta 349  Q
    ||||||| |||||| ||||||||||| ||||||    
T  19090328 taaaaagttcattaatttaaataggctaggcta 19090296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 217 - 357
Target Start/End: Complemental strand, 17914021 - 17913881
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 316  Q
    ||||||||||| |||| || | ||||| |||||||||||  | ||||||||| ||||||||||||| |||  ||||||||||||| |  |||||||||||    
T  17914021 tgggaataggcgaggccgctcttcaggagcctatgacccaacgtacttaaagctcggctcggcctaactcctttattaaataggtaagactcaagctttt 17913922  T
Q  317 taaaaagctcattattttaaataggccaggctaatgcttat 357  Q
    ||||||| | |||| ||||||||||| ||| ||| ||||||    
T  17913921 taaaaagtttattaatttaaataggctaggttaaggcttat 17913881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 237 - 357
Target Start/End: Original strand, 30378310 - 30378429
Alignment:
Q  237 cgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaa 336  Q
    ||||||||| |||||| ||||||||||||||| |||||||||||||  |||  ||||||||| ||||  ||||||| ||||||||||||||||| |||||    
T  30378310 cgtcaggggtctatgatccggcctacttaaagctcggctcggcctaattcgtatattaaataagttagactcaagc-ttttaaaaagctcattaatttaa 30378408  T
Q  337 ataggccaggctaatgcttat 357  Q
    |||||| ||| ||| ||||||    
T  30378409 ataggctaggataaggcttat 30378429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 217 - 343
Target Start/End: Complemental strand, 34640624 - 34640498
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 316  Q
    |||||||||||||| | |||||||||||||||||| | ||||||||| ||||  ||||||| ||||||||| ||| |||||| || |  ||  |||||||    
T  34640624 tgggaataggccagaccgcccgtcaggggcctatggctcggcctactaaaagcccggctcgacctagctcgattaataaataagtcaaacttgagctttt 34640525  T
Q  317 taaaaagctcattattttaaataggcc 343  Q
    ||||||||  |||| ||||||||||||    
T  34640524 taaaaagcctattaatttaaataggcc 34640498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 213 - 341
Target Start/End: Original strand, 41533370 - 41533498
Alignment:
Q  213 gggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagc 312  Q
    |||||| ||||||| ||| | | |||||||||| |||||   | ||||||| ||||||||||||||||||| ||| ||| ||||||||  | |||  |||    
T  41533370 gggatgagaataggtcagaccgtccgtcaggggtctatggttcagcctactaaaagttcggctcggcctagatcgtttaataaataggccaagcttgagc 41533469  T
Q  313 tttttaaaaagctcattattttaaatagg 341  Q
    ||||||||||||| |||| ||||||||||    
T  41533470 tttttaaaaagcttattaatttaaatagg 41533498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 322
Target Start/End: Complemental strand, 5306197 - 5306088
Alignment:
Q  213 gggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagc 312  Q
    |||||||||||||||||||| || ||||||||||||||| |||| |||||| |||| ||| | || ||||||||| ||| |||| |||| | ||   |||    
T  5306197 gggatgggaataggccaggccgctcgtcaggggcctatggcccgacctactgaaagctcgacccgacctagctcgtttaataaaaaggtcaagcatgagc 5306098  T
Q  313 tttttaaaaa 322  Q
    ||||||||||    
T  5306097 tttttaaaaa 5306088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 237 - 350
Target Start/End: Complemental strand, 15609848 - 15609735
Alignment:
Q  237 cgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaa 336  Q
    ||||||||| ||||| |||| |||||||||||  | | |||||||  |||   |||||||||||||| |||||||||||||||||||| || || |||||    
T  15609848 cgtcaggggtctatgtcccgacctacttaaaggccagttcggccttactcatctattaaataggttaggctcaagctttttaaaaagcacaataatttaa 15609749  T
Q  337 ataggccaggctaa 350  Q
    ||||| ||| ||||    
T  15609748 ataggtcagtctaa 15609735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 472
Target Start/End: Complemental strand, 38129533 - 38129470
Alignment:
Q  408 tacaatttcgagttttttcctctgaaattgatttttagcctcaaatttattgttcaactcgcttt 472  Q
    |||||||||||| |||| ||  || ||||||||||||||||||||||||||||||| ||| ||||    
T  38129533 tacaatttcgagcttttgcca-tgcaattgatttttagcctcaaatttattgttcatctcacttt 38129470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 324
Target Start/End: Complemental strand, 38120103 - 38119996
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 316  Q
    ||||||||| ||||||||| | ||| ||||||||| | |||| |||  ||||| |||||||||||||| |  ||| ||||| ||| | |||  |||||||    
T  38120103 tgggaatagaccaggctgctcatcatgggcctatggctcggcttacaaaaagtccggctcggcctagcccatttaataaatgggtcaagcttgagctttt 38120004  T
Q  317 taaaaagc 324  Q
    ||||||||    
T  38120003 taaaaagc 38119996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 337
Target Start/End: Original strand, 13293540 - 13293629
Alignment:
Q  248 tatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaaa 337  Q
    ||||||||| |||||||||| | || ||| | |||  | | ||||||||||| ||| | |||| ||||||||||||||||||| ||||||    
T  13293540 tatgacccgtcctacttaaaatccgactcagtctaatttgtttattaaatagattagggtcaaactttttaaaaagctcattaatttaaa 13293629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 466
Target Start/End: Original strand, 37541339 - 37541372
Alignment:
Q  433 aattgatttttagcctcaaatttattgttcaact 466  Q
    ||||||||||||||||||||||||||||| ||||    
T  37541339 aattgatttttagcctcaaatttattgtttaact 37541372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 217 - 357
Target Start/End: Complemental strand, 35342 - 35207
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 316  Q
    |||||||||||||||| || | ||||||||||||||| |  |||||||||||     | |||||||||| | ||||||||||||||| ||||||||||||    
T  35342 tgggaataggccaggccgctcatcaggggcctatgactctacctacttaaag-----cccggcctagcttgtttattaaataggttaggctcaagctttt 35248  T
Q  317 taaaaagctcattattttaaataggccaggctaatgcttat 357  Q
    |||||||||||||| ||||||||||| ||||||||||||||    
T  35247 taaaaagctcattaatttaaataggctaggctaatgcttat 35207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 220 - 357
Target Start/End: Complemental strand, 28283777 - 28283642
Alignment:
Q  220 gaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaa 319  Q
    ||||||||||||| ||  |||||||| ||||||||| || |||||||||  ||||||||||||||||| ||||||||||||| | ||||||| |||||||    
T  28283777 gaataggccaggccgc--gtcaggggtctatgacccagcttacttaaagcccggctcggcctagctcgtttattaaataggtaaggctcaagttttttaa 28283680  T
Q  320 aaagctcattattttaaataggccaggctaatgcttat 357  Q
    |||| |||||  ||||||||||| ||||||| ||||||    
T  28283679 aaagttcatttatttaaataggctaggctaaggcttat 28283642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 217 - 348
Target Start/End: Original strand, 34582985 - 34583116
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 316  Q
    |||||||||||||||| |||||||||| ||||||| | ||||||||| |||| ||||||||||||| |||| ||| | |||  || | |||  |||||||    
T  34582985 tgggaataggccaggccgcccgtcaggagcctatggctcggcctactaaaagctcggctcggcctaactcgtttaatcaatgagtcaagcttgagctttt 34583084  T
Q  317 taaaaagctcattattttaaataggccaggct 348  Q
    ||||||||  |||| ||||| |||||| ||||    
T  34583085 taaaaagcctattaatttaattaggccgggct 34583116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 220 - 336
Target Start/End: Original strand, 29454623 - 29454739
Alignment:
Q  220 gaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaa 319  Q
    ||||||||||| |   |||||||||  ||||| ||||| |||||||||| |||||||| |||| |||| |||||||| ||||||  || ||| |||||||    
T  29454623 gaataggccagaccatccgtcagggatctatggcccggtctacttaaagctcggctcgacctaactcgtttattaaacaggttagacttaagatttttaa 29454722  T
Q  320 aaagctcattattttaa 336  Q
    ||||||||||| |||||    
T  29454723 aaagctcattaatttaa 29454739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 217 - 349
Target Start/End: Original strand, 5862688 - 5862820
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 316  Q
    |||||||||| ||| |  ||||||||||  ||||| | || ||||||||||||||  ||| ||||| |||| |||||||||| |||| | |||  ||| |    
T  5862688 tgggaataggtcagaccacccgtcagggatctatgccgcgacctacttaaagttctactcagcctaactcgtttattaaatatgttaggttcagacttgt 5862787  T
Q  317 taaaaagctcattattttaaataggccaggcta 349  Q
    |||||||||||||| |||||||| | |||||||    
T  5862788 taaaaagctcattaatttaaataagtcaggcta 5862820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 217 - 345
Target Start/End: Original strand, 40896994 - 40897122
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 316  Q
    |||||||||| |||| ||| ||||||||||||||| | || |||||| |||| |||| ||||||||| ||| ||| ||||| ||| |  || ||||||||    
T  40896994 tgggaataggtcaggttgctcgtcaggggcctatggctcgacctactaaaagctcggttcggcctagttcgtttaataaatgggtcaaacttaagctttt 40897093  T
Q  317 taaaaagctcattattttaaataggccag 345  Q
    |||||| ||  ||| ||||| ||||||||    
T  40897094 taaaaatcttgttaatttaattaggccag 40897122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 324
Target Start/End: Complemental strand, 10542458 - 10542347
Alignment:
Q  213 gggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagc 312  Q
    |||||| ||||||||||| | || | ||||||||||||| | ||||||| | |||  |||||||||| || |||| ||| ||||| ||| | |||  |||    
T  10542458 gggatgagaataggccagaccgctcatcaggggcctatggctcggcctattaaaaactcggctcggcttaactcgtttaataaatgggtcaagcttgagc 10542359  T
Q  313 tttttaaaaagc 324  Q
    ||||||||||||    
T  10542358 tttttaaaaagc 10542347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 472
Target Start/End: Complemental strand, 10860140 - 10860101
Alignment:
Q  433 aattgatttttagcctcaaatttattgttcaactcgcttt 472  Q
    ||||||||||||||||||| ||||||||||||||| ||||    
T  10860140 aattgatttttagcctcaactttattgttcaactcacttt 10860101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 357
Target Start/End: Original strand, 16719652 - 16719787
Alignment:
Q  222 ataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaa 321  Q
    ||||| ||||||| || |||| |||||||| | ||||||||| |||||  ||||| ||||| |||| ||| |||||  || | |||  ||||||||||||    
T  16719652 ataggtcaggctgtccatcagaggcctatggctcggcctactaaaagtctggctcagcctaactcgtttaataaatgagtcaagcttgagctttttaaaa 16719751  T
Q  322 agctcattattttaaataggccaggctaatgcttat 357  Q
    |||  |||| ||||| |||||| |||| | ||||||    
T  16719752 agcctattaatttaattaggccgggcttaggcttat 16719787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 465
Target Start/End: Complemental strand, 38822329 - 38822275
Alignment:
Q  411 aatttcgagttttttcctctgaaattgatttttagcctcaaatttattgttcaac 465  Q
    ||||| |||||||| ||| |  |||||||||||| ||||||||||||||||||||    
T  38822329 aatttggagtttttacctttacaattgatttttaacctcaaatttattgttcaac 38822275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 470
Target Start/End: Complemental strand, 25358517 - 25358480
Alignment:
Q  433 aattgatttttagcctcaaatttattgttcaactcgct 470  Q
    ||||||||||||| || |||||||||||||||||||||    
T  25358517 aattgatttttagtcttaaatttattgttcaactcgct 25358480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 37508969 - 37509014
Alignment:
Q  305 gctcaagctttttaaaaagctcattattttaaataggccaggctaa 350  Q
    |||||| |||||||||||| || ||| |||||||||||||||||||    
T  37508969 gctcaaactttttaaaaagttcgttaatttaaataggccaggctaa 37509014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 279 - 355
Target Start/End: Original strand, 1669680 - 1669756
Alignment:
Q  279 cctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaaataggccaggctaatgctt 355  Q
    ||||| ||| ||||||||||| ||| | || |||||||| |||||||||||| || |||||||| ||| ||| ||||    
T  1669680 cctagttcgtttattaaatagattaggttccagcttttttaaaagctcattaattgaaataggctaggttaaggctt 1669756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 217 - 341
Target Start/End: Complemental strand, 13582794 - 13582670
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 316  Q
    |||||||||||||||||||||||||  ||||||||||||  |||||||| || | ||||||||| |||||| |||||| |||||||| |||||| ||||     
T  13582794 tgggaataggccaggctgcccgtcaatggcctatgacccaacctacttagagattggctcggcccagctcgtttattatataggttaggctcaaacttta 13582695  T
Q  317 taaaaagctcattattttaaatagg 341  Q
      |||| ||||||| ||||| ||||    
T  13582694 acaaaatctcattaatttaattagg 13582670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 220 - 336
Target Start/End: Complemental strand, 42281318 - 42281202
Alignment:
Q  220 gaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaa 319  Q
    |||||| |||||| || |||||||||||||||||| | |||||||||||| ||||||||| || |||  || |||||||||| |  ||||||||||||||    
T  42281318 gaatagaccaggccgctcgtcaggggcctatgacctgacctacttaaagtccggctcggcttaactcatttgttaaataggtaagactcaagctttttaa 42281219  T
Q  320 aaagctcattattttaa 336  Q
    |||| |||||| |||||    
T  42281218 aaagttcattaatttaa 42281202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 220 - 357
Target Start/End: Original strand, 29909273 - 29909410
Alignment:
Q  220 gaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaa 319  Q
    ||||||||||||| || ||||||||| |||||| |||||||||| |||||  | ||||||||| |||| ||| ||||||||| | ||   ||||||||||    
T  29909273 gaataggccaggccgctcgtcaggggtctatgatccggcctactaaaagtctgactcggcctaactcgtttaataaataggtcaagcatgagctttttaa 29909372  T
Q  320 aaagctcattattttaaataggccaggctaatgcttat 357  Q
    ||| |  |||| ||||||| ||| ||||| | ||||||    
T  29909373 aaatcctattaatttaaatgggctaggcttaggcttat 29909410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 16576756 - 16576676
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaat 297  Q
    |||||||||||||||  |||||||||||||||||| | ||||||||| ||||  | |||| ||||| |||| ||| |||||    
T  16576756 tgggaataggccaggtcgcccgtcaggggcctatggctcggcctactaaaagccccgctcagcctaactcgtttaataaat 16576676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 226 - 318
Target Start/End: Original strand, 33075279 - 33075371
Alignment:
Q  226 gccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagcttttta 318  Q
    ||||||||| ||| ||||||||||||||   |||||||||||||   |||||| | |||||  ||| |||| |||| | ||||||||||||||    
T  33075279 gccaggctgaccgacaggggcctatgacttagcctacttaaagtctagctcggtccagctcatttaataaaaaggtcaggctcaagcttttta 33075371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 213 - 323
Target Start/End: Complemental strand, 12218746 - 12218636
Alignment:
Q  213 gggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagc 312  Q
    |||||||||||||||||||| |||||||||||||||||| | || |||||| |||| ||||||||||||| |||| ||| |||||  || |  || ||||    
T  12218746 gggatgggaataggccaggccgcccgtcaggggcctatggctcgacctactaaaagctcggctcggcctatctcgtttaataaatgagtcaaacttaagc 12218647  T
Q  313 tttttaaaaag 323  Q
    |||||||||||    
T  12218646 tttttaaaaag 12218636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 244 - 357
Target Start/End: Complemental strand, 35224874 - 35224760
Alignment:
Q  244 ggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagc-tttttaaaaagctcattattttaaataggc 342  Q
    |||||||| |||| ||||||||||| || |||| ||||| |||| ||||||||||||||| |||||| | ||||| |||| ||||||| ||||||||||     
T  35224874 ggcctatggcccgacctacttaaagctcagctcagcctaactcgtttattaaataggttaggctcaaactttttttaaaaactcattaatttaaataggt 35224775  T
Q  343 caggctaatgcttat 357  Q
    |||| ||| ||||||    
T  35224774 caggttaaggcttat 35224760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 217 - 338
Target Start/End: Complemental strand, 9626424 - 9626303
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttt 316  Q
    |||||||| ||||||||||  |||||||||||||| ||||||||||| |||| ||||| || |||| |||| ||| ||||||||| |  |   |||||||    
T  9626424 tgggaataagccaggctgcttgtcaggggcctatggcccggcctactaaaagctcggcccgacctaactcgtttaataaataggtcaaacatgagctttt 9626325  T
Q  317 taaaaagctcattattttaaat 338  Q
    ||||||||| |||| |||||||    
T  9626324 taaaaagcttattaatttaaat 9626303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 259 - 350
Target Start/End: Original strand, 32521128 - 32521219
Alignment:
Q  259 ctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaaataggccaggctaa 350  Q
    |||||||||||   |||||||||| |||  ||||||||||||||   ||||| ||||||||||||||||||| |||| ||||| ||| ||||    
T  32521128 ctacttaaagtctagctcggcctatctcttttattaaataggtttgactcaaactttttaaaaagctcattaatttagataggtcagactaa 32521219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 5738542 - 5738622
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaat 297  Q
    |||||||||||||||| || ||||||||||||||| |  |||||||| ||||||| |||| | ||| |||| ||| |||||    
T  5738542 tgggaataggccaggccgctcgtcaggggcctatggcttggcctactaaaagttcagctcagtctaactcgtttaataaat 5738622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 341
Target Start/End: Complemental strand, 9823710 - 9823582
Alignment:
Q  213 gggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagc 312  Q
    ||||||| |||||| |||| || || || | ||||||||  | ||| |||||||||| || ||| | |||| ||| |||||||||||||||  ||||| |    
T  9823710 gggatggaaataggtcaggttgtccatcggaggcctatggtcgggcttacttaaagtccgactccgtctagatcgtttattaaataggttagactcaatc 9823611  T
Q  313 tttttaaaaagctcattattttaaatagg 341  Q
    ||||||||||   ||||| ||||||||||    
T  9823610 tttttaaaaactacattaatttaaatagg 9823582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 341
Target Start/End: Complemental strand, 10725635 - 10725507
Alignment:
Q  213 gggatgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagc 312  Q
    ||||||| |||||| |||| || || || | ||||||||  | ||| |||||||||| || ||| | |||| ||| |||||||||||||||  ||||| |    
T  10725635 gggatggaaataggtcaggttgtccatcggaggcctatggtcgggcttacttaaagtccgactccgtctagatcgtttattaaataggttagactcaatc 10725536  T
Q  313 tttttaaaaagctcattattttaaatagg 341  Q
    ||||||||||   ||||| ||||||||||    
T  10725535 tttttaaaaactacattaatttaaatagg 10725507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 462
Target Start/End: Original strand, 27423055 - 27423096
Alignment:
Q  421 tttttcctctgaaattgatttttagcctcaaatttattgttc 462  Q
    ||||||||||| || |||||||||| ||||||||||||||||    
T  27423055 tttttcctctgcaaatgatttttaggctcaaatttattgttc 27423096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 237 - 357
Target Start/End: Complemental strand, 26425876 - 26425756
Alignment:
Q  237 cgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaa 336  Q
    ||||||||| |||||  |||||||||| |||| ||||   |||||| |||| ||| |||| |||| | ||   ||||||||||||||||  ||| |||||    
T  26425876 cgtcaggggtctatggtccggcctactgaaagctcggtctggcctaactcgtttaataaaaaggtcaagcattagctttttaaaaagcttgttaatttaa 26425777  T
Q  337 ataggccaggctaatgcttat 357  Q
    || ||||||||| | ||||||    
T  26425776 atgggccaggcttaagcttat 26425756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 16166202 - 16166270
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagct 285  Q
    |||||||||||||||| |||||||||||||||||| | ||||||||| |||| ||||||||||||||||    
T  16166202 tgggaataggccaggccgcccgtcaggggcctatggctcggcctactaaaagctcggctcggcctagct 16166270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 220 - 341
Target Start/End: Complemental strand, 14265925 - 14265804
Alignment:
Q  220 gaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaa 319  Q
    ||||||| |||||||||| ||| ||| ||||| |||  |||||||| |   |||||||  ||| |||| || ||||||||||||  ||||||||||||||    
T  14265925 gaataggtcaggctgcccatcaagggtctatggcccaacctacttacaacacggctcgatctaactcgtttgttaaataggttagactcaagctttttaa 14265826  T
Q  320 aaagctcattattttaaatagg 341  Q
    |||||||||||  |||||||||    
T  14265825 aaagctcattaacttaaatagg 14265804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 238 - 322
Target Start/End: Complemental strand, 17314488 - 17314404
Alignment:
Q  238 gtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaa 322  Q
    |||||||| ||||| |||| |||||||||||  | | ||||||||||||| |||||||||| ||||  |||||||||||||||||    
T  17314488 gtcaggggtctatggcccgacctacttaaagcgcagttcggcctagctcgtttattaaatatgttagactcaagctttttaaaaa 17314404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 301
Target Start/End: Original strand, 6138558 - 6138642
Alignment:
Q  217 tgggaataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggt 301  Q
    |||||||||| ||||| |  |||||||||||||||| |||||||||| |||| ||||   |||||| |||| ||| |||||||||    
T  6138558 tgggaataggtcaggccgttcgtcaggggcctatgatccggcctactaaaagctcggtctggcctaactcgtttaataaataggt 6138642  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 355
Target Start/End: Complemental strand, 4450773 - 4450678
Alignment:
Q  260 tacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaaaagctcattattttaaataggccaggctaatgctt 355  Q
    |||||||||||||||| | |||| ||   |||||||||||||||  || || |||||||||||| || ||| ||||||| ||| ||||||| ||||    
T  4450773 tacttaaagttcggcttgtcctatcttttttattaaataggttaaactaaaactttttaaaaagttcgttaatttaaattggcaaggctaaggctt 4450678  T

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Target: scaffold0591 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 221 - 357
Target Start/End: Original strand, 1200 - 1335
Alignment:
Q  221 aataggccaggctgcccgtcaggggcctatgacccggcctacttaaagttcggctcggcctagctcggttattaaataggttatgctcaagctttttaaa 320  Q
    ||||||||||||  |||||||||| | |||| ||||| |||||||||| | |  | | |||| |||| |||||||||| ||   ||||||||||||||||    
T  1200 aataggccaggcctcccgtcaggg-cttatggcccggtctacttaaagcttgatttgacctaactcgtttattaaatatgtctggctcaagctttttaaa 1298  T
Q  321 aagctcattattttaaataggccaggctaatgcttat 357  Q
    || ||||||| ||||||| || |||||| | ||||||    
T  1299 aaactcattaatttaaattggtcaggcttaagcttat 1335  T

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