View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13741_low_10 (Length: 414)
Name: NF13741_low_10
Description: NF13741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13741_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 24544655 - 24545051
Alignment:
| Q |
1 |
actacaaataattacgtgaatcatatggaacaatccaatagttgcaagagaaacgaggtacattgaacttaagcaataagccaaggttgaagggaacaat |
100 |
Q |
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| T |
24544655 |
actacaaataattacgtgaatcatatggaagaattcaataattgcaagaaaaacgaggtacattgaacttaagcaataagccaaggttgaagggaacaat |
24544754 |
T |
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| Q |
101 |
tatggtaaatatcaaa-ttatgaaacaatgagccaaggttgcagcgacattgaacttattctgatgattctggttggtttaatgtggaaatatttctgta |
199 |
Q |
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| T |
24544755 |
tatggtaaatatcaaaattatgaaacaataagccaaggttgaagggacattgaacttattcggatgattctggttggtttaatgtggaaatatttttgta |
24544854 |
T |
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| Q |
200 |
cacgttaaatttggaatttattcgtatcctcacccaggtacggtttatgagttatgaaaaagtttatatatgggaaagatccccgagttcagttttgcag |
299 |
Q |
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| T |
24544855 |
cacattaaatttggaatttattcgtagcctcacccaggtacggtttatgagttctggaaaagtttatatatgagaaagatccccgagttcagttttgcag |
24544954 |
T |
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| Q |
300 |
ctcttagaatgcaactcactgacttgagatatagagtgagatcattttgcagtaggattcaggttgttagagattggaaatataacaggagccaagt |
396 |
Q |
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| T |
24544955 |
ctcttagaatgcaactcactgacttgagatatagagtgagatcattttgcagtaggattcaaattgttagagattggaaatataacaggagccaagt |
24545051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 24533869 - 24533977
Alignment:
| Q |
130 |
agccaaggttgcagcgacattgaacttattctgatgattctggttggtt---taatgtggaaatatttctgtacacgttaaatttggaatttattcgtat |
226 |
Q |
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| T |
24533869 |
agccaatgttgcagggacattgaacttactctgatgattctagtcggttgcaaaatgttgaaatatttgtgtgcgtgttaaatttggaatttattggtag |
24533968 |
T |
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| Q |
227 |
cctcaccca |
235 |
Q |
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| T |
24533969 |
cttcaccca |
24533977 |
T |
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