View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13741_low_11 (Length: 404)

Name: NF13741_low_11
Description: NF13741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13741_low_11
NF13741_low_11
[»] chr7 (21 HSPs)
chr7 (14-386)||(20414296-20414668)
chr7 (62-380)||(20455931-20456237)
chr7 (326-386)||(13888635-13888695)
chr7 (163-226)||(7327758-7327821)
chr7 (158-209)||(22534240-22534291)
chr7 (158-212)||(22525575-22525629)
chr7 (327-380)||(7327614-7327667)
chr7 (327-376)||(21219285-21219334)
chr7 (253-305)||(13888574-13888626)
chr7 (327-370)||(18325699-18325742)
chr7 (332-371)||(24390870-24390909)
chr7 (163-206)||(26217543-26217586)
chr7 (346-380)||(7311865-7311899)
chr7 (242-304)||(21210918-21210980)
chr7 (64-98)||(22534321-22534355)
chr7 (64-106)||(24391081-24391123)
chr7 (63-112)||(7327860-7327909)
chr7 (169-206)||(24016362-24016399)
chr7 (64-104)||(22021058-22021098)
chr7 (64-104)||(22036776-22036816)
chr7 (163-207)||(26236438-26236482)
[»] chr4 (3 HSPs)
chr4 (154-371)||(2910462-2910682)
chr4 (168-212)||(11982094-11982138)
chr4 (327-371)||(19356933-19356977)
[»] scaffold0128 (2 HSPs)
scaffold0128 (161-209)||(8202-8250)
scaffold0128 (327-370)||(3582-3625)
[»] chr1 (2 HSPs)
chr1 (339-386)||(31443574-31443621)
chr1 (64-106)||(39379425-39379467)
[»] scaffold0064 (1 HSPs)
scaffold0064 (170-212)||(23813-23855)
[»] chr5 (3 HSPs)
chr5 (337-371)||(23086145-23086179)
chr5 (327-372)||(29598119-29598164)
chr5 (327-372)||(29641808-29641853)


Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 14 - 386
Target Start/End: Complemental strand, 20414668 - 20414296
Alignment:
Q  14 catcatgcactctggaataagcggatattaattgatcaggcacaatatttaaacttttaatacttctccaaacattatcacccaaactaaaaatgctcat 113  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20414668 catcatgcactctggaataaggggatattaattgaaaaggcacaatatttaaacttttaatacttctccaaacattatcacccaaactaaaaatgctcat 20414569  T
Q  114 gttcacctcgggttttctgagaacatttctgagaacgtcttcacaatttaaggccacaaccttataagtgttggttgaatcatcataaccaaacacaaaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||     
T  20414568 gttcacctcgggttttctgagaacatttctgagaacgtcttcacaatttaaggcaacgatcttataagtgttggttgaatcatcataaccaaacacaaac 20414469  T
Q  214 atccaagagttccgcctataattgtcagcatgcaaatatcctaatttatcagaaacttttctggtggccggattccaaaaacggagccacataactgcat 313  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||    
T  20414468 atccaagagttccgtctataattgtcagcatgcaaatatcctaatttatcagaaatttttctggtggccgggttccaaaaacggagccacacaactgcat 20414369  T
Q  314 tatgattggcgagagaataacctagcaagcaaaccaatccattgcaggaaccaacaacttcacgacagccctt 386  Q
    ||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20414368 tatcattggcgagagaataaccgagcaagcagaccaatccattgcaggaaccaacaacttcacgacagccctt 20414296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 62 - 380
Target Start/End: Complemental strand, 20456237 - 20455931
Alignment:
Q  62 ttaaacttttaatacttctccaaacattatcacccaaactaaaaatgctcatgttcacctcgggttttctgagaacatttctgagaacgtcttcacaatt 161  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| ||| |||||            ||||||||||    
T  20456237 ttaaacattgaatacttctccaaacattatcacccaaactaaaaatgctcattttaacctcaggttttttgaaaacat------------cttcacaatt 20456150  T
Q  162 taaggccacaaccttataagtgttggttgaatcatcataaccaaacacaaaaatccaagagttccgcctataattgtcagcatgcaaatatcctaattta 261  Q
     ||||||||||||||||| |||| |||||||| |||| ||| ||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||    
T  20456149 caaggccacaaccttatatgtgtcggttgaattatcaaaacaaaacacaaacatccaagagttccgtctataattgtcatcatgcaaatatcctaattta 20456050  T
Q  262 tcagaaacttttctggtggccggattccaaaaacggagccacataactgcattatgattggcgagagaataacctagcaagcaaaccaatccattgcagg 361  Q
    ||||||| ||| |||||||| || ||||||||||| | ||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||    
T  20456049 tcagaaattttcctggtggcagggttccaaaaacgaaaccacataactgcactatgatcggcgagagaataaccaagcaagcaaaccaatccattgcagg 20455950  T
Q  362 aaccaacaacttcacgaca 380  Q
    |||||| || || ||||||    
T  20455949 aaccaataaatttacgaca 20455931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 326 - 386
Target Start/End: Original strand, 13888635 - 13888695
Alignment:
Q  326 gagaataacctagcaagcaaaccaatccattgcaggaaccaacaacttcacgacagccctt 386  Q
    |||||||||| |||||||| |||||||||||||||||||||||||| | ||||||| ||||    
T  13888635 gagaataaccgagcaagcagaccaatccattgcaggaaccaacaacatgacgacagtcctt 13888695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 7327821 - 7327758
Alignment:
Q  163 aaggccacaaccttataagtgttggttgaatcatcataaccaaacacaaaaatccaagagttcc 226  Q
    ||||| ||||||||||||||||||||||||| |||||||| |||||||||  ||||||| ||||    
T  7327821 aaggctacaaccttataagtgttggttgaattatcataacaaaacacaaacctccaagaattcc 7327758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 22534291 - 22534240
Alignment:
Q  158 aatttaaggccacaaccttataagtgttggttgaatcatcataaccaaacac 209  Q
    |||||||||| ||||||||||| |||| |||||||| |||||||||||||||    
T  22534291 aatttaaggctacaaccttataggtgtcggttgaattatcataaccaaacac 22534240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 22525575 - 22525629
Alignment:
Q  158 aatttaaggccacaaccttataagtgttggttgaatcatcataaccaaacacaaa 212  Q
    |||||||||| ||||| ||||| |||| |||||||| ||||||||||||||||||    
T  22525575 aatttaaggctacaactttataggtgtcggttgaattatcataaccaaacacaaa 22525629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 380
Target Start/End: Complemental strand, 7327667 - 7327614
Alignment:
Q  327 agaataacctagcaagcaaaccaatccattgcaggaaccaacaacttcacgaca 380  Q
    ||||| ||||| |||||| |||||||||||||| ||||||| ||||||||||||    
T  7327667 agaattacctaacaagcagaccaatccattgcatgaaccaataacttcacgaca 7327614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 376
Target Start/End: Original strand, 21219285 - 21219334
Alignment:
Q  327 agaataacctagcaagcaaaccaatccattgcaggaaccaacaacttcac 376  Q
    |||||||||  |||| || |||||||||||||||||||||||||||||||    
T  21219285 agaataaccgcgcaaacagaccaatccattgcaggaaccaacaacttcac 21219334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 13888574 - 13888626
Alignment:
Q  253 cctaatttatcagaaacttttctggtggccggattccaaaaacggagccacat 305  Q
    |||||||||||||| | |||||||||||| |||||||| ||||||| ||||||    
T  13888574 cctaatttatcagatatttttctggtggcgggattccagaaacggaaccacat 13888626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 370
Target Start/End: Complemental strand, 18325742 - 18325699
Alignment:
Q  327 agaataacctagcaagcaaaccaatccattgcaggaaccaacaa 370  Q
    |||||||||||||||||| | |||||||||||| ||||||||||    
T  18325742 agaataacctagcaagcatagcaatccattgcaagaaccaacaa 18325699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 371
Target Start/End: Complemental strand, 24390909 - 24390870
Alignment:
Q  332 aacctagcaagcaaaccaatccattgcaggaaccaacaac 371  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  24390909 aaccaagcaagcaaaccaaaccattgcaggaaccaacaac 24390870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 26217586 - 26217543
Alignment:
Q  163 aaggccacaaccttataagtgttggttgaatcatcataaccaaa 206  Q
    |||||||||||||| ||||| || ||||||||||||||||||||    
T  26217586 aaggccacaaccttgtaagttttcgttgaatcatcataaccaaa 26217543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 380
Target Start/End: Original strand, 7311865 - 7311899
Alignment:
Q  346 accaatccattgcaggaaccaacaacttcacgaca 380  Q
    |||||||||||||||||||||| ||||||||||||    
T  7311865 accaatccattgcaggaaccaataacttcacgaca 7311899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 21210918 - 21210980
Alignment:
Q  242 catgcaaatatcctaatttatcagaaacttttctggtggccggattccaaaaacggagccaca 304  Q
    |||||||||| |||||||||||||| |  ||||||||||| || ||||| ||| |||||||||    
T  21210918 catgcaaataccctaatttatcagatatatttctggtggcggggttccagaaatggagccaca 21210980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 22534355 - 22534321
Alignment:
Q  64 aaacttttaatacttctccaaacattatcacccaa 98  Q
    |||||||||||| ||||||||||||||||||||||    
T  22534355 aaacttttaatagttctccaaacattatcacccaa 22534321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 24391123 - 24391081
Alignment:
Q  64 aaacttttaatacttctccaaacattatcacccaaactaaaaa 106  Q
    ||||||| |||| ||||||||| ||||||||||||||||||||    
T  24391123 aaactttgaatatttctccaaatattatcacccaaactaaaaa 24391081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 7327909 - 7327860
Alignment:
Q  63 taaacttttaatacttctccaaacattatcacccaaactaaaaatgctca 112  Q
    |||| ||| |||| || |||||||||||||||||||| ||||||||||||    
T  7327909 taaagtttgaatagttttccaaacattatcacccaaagtaaaaatgctca 7327860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 24016399 - 24016362
Alignment:
Q  169 acaaccttataagtgttggttgaatcatcataaccaaa 206  Q
    |||||||||||||| || ||||||||||||||||||||    
T  24016399 acaaccttataagttttcgttgaatcatcataaccaaa 24016362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 22021098 - 22021058
Alignment:
Q  64 aaacttttaatacttctccaaacattatcacccaaactaaa 104  Q
    ||||||| |||| |||||||||||||||| |||||||||||    
T  22021098 aaactttcaatatttctccaaacattatcgcccaaactaaa 22021058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 22036816 - 22036776
Alignment:
Q  64 aaacttttaatacttctccaaacattatcacccaaactaaa 104  Q
    ||||||| |||| |||||||||||||||| |||||||||||    
T  22036816 aaactttcaatatttctccaaacattatcgcccaaactaaa 22036776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 26236482 - 26236438
Alignment:
Q  163 aaggccacaaccttataagtgttggttgaatcatcataaccaaac 207  Q
    ||||| |||||||| ||||| || |||||||||||||||||||||    
T  26236482 aaggctacaaccttgtaagtttttgttgaatcatcataaccaaac 26236438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 154 - 371
Target Start/End: Complemental strand, 2910682 - 2910462
Alignment:
Q  154 tcacaatttaaggccacaaccttataagtgttggttgaatcatcataaccaaacacaaaaatccaagagttccgcctataattgtcagcatgcaaatatc 253  Q
    |||||||  ||||||||||||||||||||||  ||||||| ||||||||||||||| ||| ||||| |   ||   |||||| |  | ||| |||| | |    
T  2910682 tcacaatccaaggccacaaccttataagtgtgagttgaattatcataaccaaacaccaaattccaaaaacaccaattataatcgctatcatacaaaaacc 2910583  T
Q  254 ctaatttatcagaaacttttctggtggccggattccaaaaacggagccacataactgcatta---tgattggcgagagaataacctagcaagcaaaccaa 350  Q
    ||||||||| ||| | | | || ||||| || ||||| |||||||||||||||| || ||||   | || ||  | |||||||||  | ||||| |||||    
T  2910582 ctaatttattagatattgtccttgtggcagggttccacaaacggagccacataagtgtattatcttcatcgggaaaagaataaccgcgtaagcagaccaa 2910483  T
Q  351 tccattgcaggaaccaacaac 371  Q
    ||||||||| |||||||||||    
T  2910482 tccattgcaagaaccaacaac 2910462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 11982094 - 11982138
Alignment:
Q  168 cacaaccttataagtgttggttgaatcatcataaccaaacacaaa 212  Q
    ||||||||||||||||| | |||||| | ||||||||||||||||    
T  11982094 cacaaccttataagtgtcgcttgaattaacataaccaaacacaaa 11982138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 19356977 - 19356933
Alignment:
Q  327 agaataacctagcaagcaaaccaatccattgcaggaaccaacaac 371  Q
    ||||||||| ||||| |||| |||||||||||| |||||||||||    
T  19356977 agaataaccaagcaaacaaagcaatccattgcaagaaccaacaac 19356933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 8250 - 8202
Alignment:
Q  161 ttaaggccacaaccttataagtgttggttgaatcatcataaccaaacac 209  Q
    ||||||||||||| |||||||||| |||||||  |||||||||||||||    
T  8250 ttaaggccacaactttataagtgtcggttgaactatcataaccaaacac 8202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 370
Target Start/End: Complemental strand, 3625 - 3582
Alignment:
Q  327 agaataacctagcaagcaaaccaatccattgcaggaaccaacaa 370  Q
    |||| ||||||||||||||||||||||||| || ||||||||||    
T  3625 agaaaaacctagcaagcaaaccaatccattacacgaaccaacaa 3582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 386
Target Start/End: Original strand, 31443574 - 31443621
Alignment:
Q  339 caagcaaaccaatccattgcaggaaccaacaacttcacgacagccctt 386  Q
    |||||| ||||||||||||||||||||||||||| || ||||| ||||    
T  31443574 caagcagaccaatccattgcaggaaccaacaactccaggacagtcctt 31443621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 39379425 - 39379467
Alignment:
Q  64 aaacttttaatacttctccaaacattatcacccaaactaaaaa 106  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||    
T  39379425 aaactttcaatatttctccaaacattatcacccaaactgaaaa 39379467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 23855 - 23813
Alignment:
Q  170 caaccttataagtgttggttgaatcatcataaccaaacacaaa 212  Q
    |||||||||||||||||||| |||  |||||||||||||||||    
T  23855 caaccttataagtgttggttaaattctcataaccaaacacaaa 23813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 371
Target Start/End: Complemental strand, 23086179 - 23086145
Alignment:
Q  337 agcaagcaaaccaatccattgcaggaaccaacaac 371  Q
    |||||||||| ||||||||||||||||||||||||    
T  23086179 agcaagcaaagcaatccattgcaggaaccaacaac 23086145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 29598119 - 29598164
Alignment:
Q  327 agaataacctagcaagcaaaccaatccattgcaggaaccaacaact 372  Q
    ||||||||| ||||| |||| |||||||||||| ||||||||||||    
T  29598119 agaataaccaagcaaacaaagcaatccattgcatgaaccaacaact 29598164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 29641853 - 29641808
Alignment:
Q  327 agaataacctagcaagcaaaccaatccattgcaggaaccaacaact 372  Q
    ||||||||| ||||| |||| |||||||||||| ||||||||||||    
T  29641853 agaataaccaagcaaacaaagcaatccattgcatgaaccaacaact 29641808  T

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