View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13741_low_15 (Length: 347)
Name: NF13741_low_15
Description: NF13741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13741_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 13333185 - 13333504
Alignment:
| Q |
13 |
aatattgttgcattagttttaccaatattaataattattctgcnnnnnnncaaccttataaaatccaaatacaaaaagcctatatatagatggattaacc |
112 |
Q |
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| T |
13333185 |
aatattgttgcattagttttaccaatattaataattattctgcaaaaaaacaaccttataaaatccaaatacaaaaagcctatatatagatggattaacc |
13333284 |
T |
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| Q |
113 |
cctttgctctttgcatcattcacaacactactacaatggccaactctaacccaaagctccttgtgacacaaaaccccttctctgttttccttttaacctt |
212 |
Q |
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| T |
13333285 |
cctttgctctttgcatcattcacaacactactacaatggccaactcaaacccaaagctccttgtgacacaaaaccccttctctgttttccttttaacctt |
13333384 |
T |
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| Q |
213 |
tctcttgttaatcaccaatgtcaaatcagactcattttctttcaacttccccaaatttgacaccgatactaaaagcatcattattgatggtgatgccaac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13333385 |
tctcttgttaatcaccaatgtcaaatcagactcattttctttcaacttccccaaatttgacaccgatactaaaagcatcattattgatggtgatgccaac |
13333484 |
T |
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| Q |
313 |
acaacaaatggagtactaca |
332 |
Q |
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| T |
13333485 |
acaacgaatggagtactaca |
13333504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 72 - 332
Target Start/End: Original strand, 13308081 - 13308348
Alignment:
| Q |
72 |
aaaatccaaatacaaaaagcctatatatagatggattaacccctttgctctttgcatcattcacaacactactacaatggccaactctaacccaaagctc |
171 |
Q |
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| T |
13308081 |
aaaatcgaaatacaaaa-gcctatatatagatggactaatccctttgctatatgcatcatacacaaca-taataccatggccaactccataccaaaactc |
13308178 |
T |
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| Q |
172 |
cttgtgacacaaaaccccttctctgttttccttttaacc---------tttctcttgttaatcaccaatgtcaaatcagactcattttctttcaacttcc |
262 |
Q |
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|||| |||||||||||||||||||||| ||||| || | || || |||||||||| ||| ||||| || |||||||| ||||||||||||| |
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| T |
13308179 |
cttgcaacacaaaaccccttctctgtttccctttcaatcttcttctttttacttttgttaatcaacaacgtcaagtcggactcattatctttcaacttcc |
13308278 |
T |
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| Q |
263 |
ccaaatttgacaccgatactaaaagcatcattattgatggtgatgccaacacaacaaatggagtactaca |
332 |
Q |
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||||||| || |||||| | || ||| | || || ||||||||||| |||||| |||||||||||| |
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| T |
13308279 |
ccaaattcgataccgatgccctaaacattgtcatcgacggtgatgccaaaacaacaggtggagtactaca |
13308348 |
T |
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