View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13741_low_19 (Length: 276)
Name: NF13741_low_19
Description: NF13741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13741_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 31668470 - 31668735
Alignment:
| Q |
1 |
tgagcttcgcggaaggtatggtgaaatctcacaaagttggtctagaaagataagttgtgctacaagatgagatctgtgcataaatccaaatataacattt |
100 |
Q |
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| T |
31668470 |
tgagcttcgcggaaggtatggtgaaatctcacaaagttggtctagaaagataagttgtgctacaagatgagatctgtgcataaatccaaatataacattt |
31668569 |
T |
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| Q |
101 |
tagaaaactacaaaatgaaagactaatgtttcagataaaacagagcaaagatgcatgaattctgccttgaataaatggcactatcttaccttaattagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31668570 |
tagaaaactacaaaatgaaagactaatgtttcagataaaacagagcaaagatgcatgaattctgccttgaataaatggcactatcttaccttaattagta |
31668669 |
T |
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| Q |
201 |
tgtatggtattctctctaacaaataaacatatataattcaagcaaaatcgtatataggtacctatgt |
267 |
Q |
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| T |
31668670 |
tgtatggtattctctctaacaaataaacatatataa-tcaagcaaaatcgtatataggtacctatgt |
31668735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 31685401 - 31685667
Alignment:
| Q |
1 |
tgagcttcgcggaaggtatggtgaaatctcacaaagttggtctagaaagataagttgtgctacaagatgagatctgtgcataaatccaaatataacattt |
100 |
Q |
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| T |
31685401 |
tgagcttcgcggaaggtatggtgaaatctctcaacgttggtctagaaagataagttgtgctacaagatgagatctgtgcataaatccaaatataacattt |
31685500 |
T |
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| Q |
101 |
tagaaaactacaaaatgaaagactaatgtttcagataaaacagagcaaagatgcatgaattctgccttgaataaatggcactatcttaccttaattagta |
200 |
Q |
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| T |
31685501 |
tagaaaactacaaaatgaaagactaatgtttcagataaaacagagcaaagatgcatgaattctgccttgaataaatggcactatcttaccttaattagta |
31685600 |
T |
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| Q |
201 |
tgtatggtattctctctaacaaataaacatatataattcaagcaaaatcgtatataggtacctatgt |
267 |
Q |
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| T |
31685601 |
tgtatggtattctctctaacaaataaacatatataattcaagcaaaattgtatataggtacctatgt |
31685667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 32795825 - 32795547
Alignment:
| Q |
1 |
tgagcttcgcggaaggtatggtgaaatctcacaaagttggtctagaaagataagttgtgctacaagatgagatctgtgcataaatccaaatat--aacat |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32795825 |
tgagcttcgcggaaggtatggtgaaatctcacaaagttggtctagaaagataagctgtgctacaagatgagatctgtgcataaatccaaatataaaacat |
32795726 |
T |
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| Q |
99 |
tttagaaaactacaaaatgaaagactaatgtttcagataaaacagagcaaagatgca----------tgaattctgccttgaataaatggcactatctta |
188 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||| |
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| T |
32795725 |
tttagaaaactacagaatgaaagactaatgtttcagataaaacagagcaatgatgcagagccgtaggtgaattctgcctagaataaatggcactatctta |
32795626 |
T |
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| Q |
189 |
ccttaattagtatgtatggtattctctctaac-aaataaacatatataattcaagcaaaatcgtatataggtacctatgt |
267 |
Q |
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|| |||||||||||| ||| ||||||||| || ||||||||| |||| ||||||||||||||||| |||||||||||||| |
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| T |
32795625 |
cc-taattagtatgtgtggaattctctctcacaaaataaacagatatgattcaagcaaaatcgtacataggtacctatgt |
32795547 |
T |
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