View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13741_low_2 (Length: 595)

Name: NF13741_low_2
Description: NF13741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13741_low_2
NF13741_low_2
[»] chr7 (19 HSPs)
chr7 (211-526)||(10599716-10600025)
chr7 (337-526)||(14568350-14568539)
chr7 (93-194)||(10600410-10600511)
chr7 (337-495)||(41508093-41508251)
chr7 (337-419)||(42935447-42935529)
chr7 (440-526)||(10409789-10409877)
chr7 (344-490)||(14650104-14650247)
chr7 (393-495)||(14658771-14658873)
chr7 (407-490)||(13777702-13777786)
chr7 (337-495)||(20949066-20949223)
chr7 (345-417)||(17757486-17757558)
chr7 (349-478)||(46341502-46341631)
chr7 (345-432)||(37048576-37048663)
chr7 (337-374)||(17205122-17205159)
chr7 (450-528)||(42935834-42935913)
chr7 (18-47)||(10600627-10600656)
chr7 (341-386)||(29808443-29808488)
chr7 (339-479)||(12506703-12506843)
chr7 (443-495)||(45072515-45072567)
[»] chr1 (18 HSPs)
chr1 (337-495)||(17971359-17971517)
chr1 (337-526)||(32715686-32715874)
chr1 (338-526)||(27442338-27442525)
chr1 (338-524)||(28723932-28724117)
chr1 (338-495)||(3574720-3574879)
chr1 (352-495)||(13603078-13603224)
chr1 (337-486)||(36437205-36437354)
chr1 (450-526)||(45691567-45691643)
chr1 (341-495)||(9851810-9851963)
chr1 (348-486)||(39150187-39150324)
chr1 (337-526)||(28165091-28165280)
chr1 (410-495)||(42454869-42454954)
chr1 (337-486)||(42745537-42745685)
chr1 (345-495)||(31181048-31181199)
chr1 (341-427)||(17988348-17988434)
chr1 (340-495)||(31152431-31152584)
chr1 (340-374)||(31003698-31003732)
chr1 (342-495)||(46443700-46443851)
[»] chr2 (25 HSPs)
chr2 (342-526)||(14200333-14200516)
chr2 (344-526)||(7011095-7011274)
chr2 (349-526)||(32872346-32872523)
chr2 (349-495)||(31404951-31405096)
chr2 (337-495)||(38214106-38214264)
chr2 (338-495)||(39063591-39063748)
chr2 (337-495)||(40442711-40442869)
chr2 (337-495)||(40503868-40504026)
chr2 (341-495)||(38496470-38496624)
chr2 (410-495)||(44173636-44173721)
chr2 (355-525)||(2287486-2287654)
chr2 (337-495)||(3268791-3268949)
chr2 (337-495)||(3269350-3269508)
chr2 (337-495)||(3269909-3270067)
chr2 (355-438)||(34262721-34262803)
chr2 (443-526)||(34309311-34309394)
chr2 (355-525)||(2315509-2315677)
chr2 (338-479)||(16781256-16781396)
chr2 (345-495)||(4015785-4015934)
chr2 (338-495)||(40664228-40664386)
chr2 (405-526)||(45723883-45724004)
chr2 (337-435)||(3711895-3711992)
chr2 (422-495)||(21794914-21794988)
chr2 (337-374)||(21794849-21794886)
chr2 (338-389)||(35310800-35310852)
[»] chr8 (15 HSPs)
chr8 (337-526)||(38209485-38209674)
chr8 (337-526)||(36408151-36408339)
chr8 (337-486)||(36054809-36054958)
chr8 (397-526)||(5923871-5924004)
chr8 (337-495)||(8251229-8251387)
chr8 (338-495)||(31658847-31659003)
chr8 (338-495)||(2207766-2207921)
chr8 (393-495)||(2152369-2152472)
chr8 (338-495)||(16890265-16890425)
chr8 (340-495)||(1445349-1445504)
chr8 (422-495)||(30653628-30653701)
chr8 (337-391)||(21504882-21504936)
chr8 (339-432)||(30112485-30112578)
chr8 (396-432)||(4641095-4641131)
chr8 (338-373)||(35431579-35431614)
[»] chr4 (12 HSPs)
chr4 (345-526)||(25376810-25376991)
chr4 (337-486)||(18838745-18838893)
chr4 (338-438)||(54863918-54864018)
chr4 (345-443)||(21128097-21128195)
chr4 (394-526)||(25382400-25382531)
chr4 (393-495)||(31707349-31707448)
chr4 (343-486)||(16572251-16572391)
chr4 (339-432)||(33721675-33721768)
chr4 (338-475)||(34319546-34319682)
chr4 (337-432)||(44884411-44884507)
chr4 (337-494)||(42312399-42312564)
chr4 (345-419)||(47231644-47231718)
[»] chr3 (23 HSPs)
chr3 (337-526)||(30041272-30041460)
chr3 (397-525)||(35104722-35104850)
chr3 (349-432)||(49983561-49983644)
chr3 (337-495)||(41559980-41560132)
chr3 (405-495)||(43105144-43105234)
chr3 (337-495)||(45261357-45261512)
chr3 (337-495)||(40344929-40345085)
chr3 (345-486)||(22923629-22923773)
chr3 (422-526)||(49983786-49983892)
chr3 (377-508)||(30577821-30577952)
chr3 (345-415)||(43105935-43106004)
chr3 (339-495)||(17003574-17003729)
chr3 (338-447)||(32211834-32211943)
chr3 (341-508)||(24650120-24650285)
chr3 (338-495)||(8825356-8825511)
chr3 (337-474)||(38854607-38854744)
chr3 (346-459)||(25295085-25295198)
chr3 (337-486)||(46918469-46918617)
chr3 (338-495)||(35455302-35455455)
chr3 (370-479)||(49787770-49787879)
chr3 (337-429)||(43320194-43320286)
chr3 (441-495)||(42279233-42279287)
chr3 (189-221)||(2567789-2567821)
[»] chr6 (9 HSPs)
chr6 (355-526)||(9425503-9425675)
chr6 (352-495)||(6657887-6658029)
chr6 (337-526)||(19780224-19780413)
chr6 (338-495)||(180334-180491)
chr6 (382-495)||(34837147-34837260)
chr6 (337-486)||(606623-606772)
chr6 (345-432)||(1856752-1856839)
chr6 (440-495)||(12143716-12143771)
chr6 (290-322)||(30627822-30627854)
[»] scaffold0015 (1 HSPs)
scaffold0015 (337-523)||(38802-38987)
[»] scaffold0006 (1 HSPs)
scaffold0006 (352-495)||(131735-131881)
[»] scaffold0836 (1 HSPs)
scaffold0836 (337-486)||(3015-3164)
[»] scaffold1809 (1 HSPs)
scaffold1809 (338-486)||(503-651)
[»] scaffold0088 (1 HSPs)
scaffold0088 (337-495)||(51266-51424)
[»] chr5 (13 HSPs)
chr5 (399-495)||(11691056-11691152)
chr5 (342-486)||(27193009-27193153)
chr5 (344-490)||(17693562-17693705)
chr5 (341-389)||(1962962-1963010)
chr5 (347-450)||(3257251-3257354)
chr5 (339-479)||(6688782-6688924)
chr5 (337-495)||(18704992-18705150)
chr5 (341-486)||(3629215-3629360)
chr5 (345-496)||(17686233-17686384)
chr5 (383-486)||(2225619-2225722)
chr5 (364-459)||(11983614-11983709)
chr5 (337-372)||(23010685-23010720)
chr5 (410-486)||(14917792-14917865)
[»] scaffold0024 (1 HSPs)
scaffold0024 (337-493)||(154333-154489)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 211 - 526
Target Start/End: Complemental strand, 10600025 - 10599716
Alignment:
Q  211 atttattttttgttgtagaatcattaacatgtgctcaaataaaaattgttactataatttttaatttctaatgtgataatactcactccggtctcattta 310  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||| ||||||    
T  10600025 atttattttttgttctagaatcattaac--gtgctcaaataaaaattgttaatgtcaattttaatttctaatgtgataatactcactccggtcccattta 10599928  T
Q  311 taagaaaaatttnnnnnnnnnnnnnntttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctca 410  Q
    |||||||| |||                | ||||||||||||||||||||||||||||||| || |||||||||||||||| | |||||||||||| |||    
T  10599927 taagaaaatttttaaaaaaaaaaa----ttgtcctatttataagaaaaagtcacaacttttgaggtacatttattgtttgaaaaacttttctaaccttca 10599832  T
Q  411 tttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaactta 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |    
T  10599831 tttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttgtaaaatcattcaaaacattgcaacaactaa 10599732  T
Q  511 tcattgtcttggtttt 526  Q
    ||| ||||||||||||    
T  10599731 tcaatgtcttggtttt 10599716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 337 - 526
Target Start/End: Original strand, 14568350 - 14568539
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    ||||||||||| |||||||||||||  |||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |||||| || | |||    
T  14568350 tttggtcctatatataagaaaaagtttcaacttttaagatatatttattgtttaaaagacttttctaaccctcatttaatgtttctcttttcaaaattag 14568449  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 526  Q
    || ||||||| ||||||||| ||| || ||  | ||||||||| ||||||||||||||| ||| ||| |||| || ||||||||||||||    
T  14568450 tgggtatattgaatacttcaaaaatttataatacggtatatttgtaaaaacattcaaaatattacaataactaatgattgtcttggtttt 14568539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 10600511 - 10600410
Alignment:
Q  93 cgtagcatagaatatgaagagtgttaaatgcctagtgttattatgatggcgctaaaacctattttaaggatcttttaccaatatttggctatttatttat 192  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  10600511 cgtagcatagaagatgaagagtgttaaatgcctagtgttattatgatggcgccaaaacctattttaaggatcttttaccaatatttgactatttatttat 10600412  T
Q  193 ac 194  Q
    ||    
T  10600411 ac 10600410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 337 - 495
Target Start/End: Original strand, 41508093 - 41508251
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    ||||||||||  ||||||||||  |||||| ||||||| |  | |||||| || | |||||||| || |||| ||||||||||| ||||||||||| |||    
T  41508093 tttggtcctaaatataagaaaatatcacaatttttaaggtgtagttattgcttaaaagacttttttaccccttatttaatgtttgtctttttaatattag 41508192  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    || || |||||||| ||||||||  |||||||||||||||||| |||||||||||||||    
T  41508193 tgggtgtatttaatgcttcacaattttttatgagggtatatttgtaaaaacattcaaaa 41508251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 337 - 419
Target Start/End: Original strand, 42935447 - 42935529
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtt 419  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||| | ||| ||||||||  |||||||||||||    
T  42935447 tttggttctatttataagaaaaagtcacaacttttgagatacatttattgtttaaaagatttttctaattctcatttaatgtt 42935529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 440 - 526
Target Start/End: Original strand, 10409789 - 10409877
Alignment:
Q  440 gtatatttaatacttcacaaaattttatgagggtatatttataaaaacattc--aaaacattgcaacaacttatcattgtcttggtttt 526  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||  |||| |||||||||||| || ||||| ||||||||    
T  10409789 gtatatttaatacttcacaaatttttaagagggtatatttataaaaacattcaaaaaaaattgcaacaactaatgattgttttggtttt 10409877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 344 - 490
Target Start/End: Complemental strand, 14650247 - 14650104
Alignment:
Q  344 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaac-cctcatttaatgtttatctttttaataatagtgtgta 442  Q
    ||||||||||||||| ||||||| |||||||||  ||||||||  | | |||||||| | |  ||||||| |||||||||| |||||||| |||||  ||    
T  14650247 ctatttataagaaaatgtcacaatttttaagatgtatttattgcataaaagactttttttagtcctcattcaatgtttatcattttaatactagtggata 14650148  T
Q  443 tatttaatacttcacaaaattttatgagggtatatttataaaaacatt 490  Q
    ||||    |||||| ||||||||| |||||||||||| ||||||||||    
T  14650147 tatt----acttcataaaattttacgagggtatatttgtaaaaacatt 14650104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 393 - 495
Target Start/End: Complemental strand, 14658873 - 14658771
Alignment:
Q  393 agacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattca 492  Q
    ||||||||  || |||| |||||||||||||||||||||| |||||   ||||||||||||||| |   |||||||||||||||||| |||||||||| |    
T  14658873 agactttttcaatcctcgtttaatgtttatctttttaatactagtggaaatatttaatacttcatatgtttttatgagggtatatttgtaaaaacattta 14658774  T
Q  493 aaa 495  Q
    |||    
T  14658773 aaa 14658771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 407 - 490
Target Start/End: Original strand, 13777702 - 13777786
Alignment:
Q  407 ctcatttaatgtttatctttttaa-taatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacatt 490  Q
    |||||||||| ||| ||||||||| || ||||  ||||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  13777702 ctcatttaatatttgtctttttaagtattagtaagtatatttaatacttcacaaatttttatgaacgtatatttataaaaacatt 13777786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 337 - 495
Target Start/End: Original strand, 20949066 - 20949223
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||| ||||||||||||||| |||| |||||||||| |  | |||||| || |  || |||| || |||| ||||||||| | |||||| |||| |||    
T  20949066 tttggttctatttataagaaaatgtcataacttttaaggtgtagttattgcttaaatgatttttttatccct-atttaatgtctctcttttgaatattag 20949164  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    | ||| ||||||||  |||||||  |||||||||||||||||| |||||| ||| ||||    
T  20949165 tatgtgtatttaatgtttcacaattttttatgagggtatatttgtaaaaatatttaaaa 20949223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 345 - 417
Target Start/End: Complemental strand, 17757558 - 17757486
Alignment:
Q  345 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatg 417  Q
    |||||||||||||||| ||||||||||||| ||||||||||| || | |||| ||| ||||||| ||||||||    
T  17757558 tatttataagaaaaagacacaacttttaaggtacatttattgcttaaaagacatttttaaccctaatttaatg 17757486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 349 - 478
Target Start/End: Original strand, 46341502 - 46341631
Alignment:
Q  349 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattta 448  Q
    ||||||||||  |||||||||||||| |  | |||||| || | |||||| |||| | || ||||| ||||| | ||||| ||||||||| || ||||||    
T  46341502 tataagaaaatatcacaacttttaaggtgtagttattgcttaaaagacttctctaccacttatttattgtttttgtttttgataatagtgggtgtattta 46341601  T
Q  449 atacttcacaaaattttatgagggtatatt 478  Q
    || ||||||||  ||||| |||||||||||    
T  46341602 atgcttcacaactttttacgagggtatatt 46341631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 345 - 432
Target Start/End: Original strand, 37048576 - 37048663
Alignment:
Q  345 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 432  Q
    ||||||||||||||  |||||||||||||  |  | | ||||||| | ||||||||||| || | |||||||||||||||||||||||    
T  37048576 tatttataagaaaatatcacaacttttaaagtgtagtgattgtttaaaagacttttctaccctttatttaatgtttatctttttaata 37048663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 374
Target Start/End: Original strand, 17205122 - 17205159
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaag 374  Q
    |||||||||||||||||||||| |||||||||||||||    
T  17205122 tttggtcctatttataagaaaatgtcacaacttttaag 17205159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 528
Target Start/End: Original strand, 42935834 - 42935913
Alignment:
Q  450 tacttcacaaaattttatgagggtatatttataaaaacat-tcaaaacattgcaacaacttatcattgtcttggtttttg 528  Q
    ||||||||||  ||||| |||||||||||| |||||||||   |||| |||||||||||| || ||||||||| ||||||    
T  42935834 tacttcacaagtttttaagagggtatatttgtaaaaacatgaaaaaaaattgcaacaactaatgattgtcttgatttttg 42935913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 10600656 - 10600627
Alignment:
Q  18 ataacagaaagagaaaaagaacaacaaaaa 47  Q
    ||||||||||||||||||||||||||||||    
T  10600656 ataacagaaagagaaaaagaacaacaaaaa 10600627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 386
Target Start/End: Original strand, 29808443 - 29808488
Alignment:
Q  341 gtcctatttataagaaaaagtcacaacttttaagatacatttattg 386  Q
    |||||||||||||||||||| ||||||||||| | | |||||||||    
T  29808443 gtcctatttataagaaaaagccacaacttttacggtgcatttattg 29808488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 479
Target Start/End: Original strand, 12506703 - 12506843
Alignment:
Q  339 tggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtg 438  Q
    ||||||||  ||||||||||  | |||||||||||| |  | ||||||||  | ||||||||||| |||| ||||||||| | | ||||||||   |||     
T  12506703 tggtcctaaatataagaaaatattacaacttttaaggtgtagttattgttcaaaagacttttctatcccttatttaatgtgtttgtttttaatctcagta 12506802  T
Q  439 tgtatatttaatacttcacaaaattttatgagggtatattt 479  Q
     || |||||| |  |||||||  ||||||||||||||||||    
T  12506803 agtgtatttattgtttcacaattttttatgagggtatattt 12506843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 495
Target Start/End: Complemental strand, 45072567 - 45072515
Alignment:
Q  443 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    |||||||| |||||||   ||||||||| ||||||||||||||| ||||||||    
T  45072567 tatttaatgcttcacagttttttatgagagtatatttataaaaatattcaaaa 45072515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 4e-58; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 337 - 495
Target Start/End: Complemental strand, 17971517 - 17971359
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||| | |||||||||||||||||||||||||||  |||||| |||| |||    
T  17971517 tttggtcctatttataagaaaaagtcacaacttttaaggtatatttattgtttaaaagacttttctaaccctcatttaatgttggtcttttcaatattag 17971418  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    |||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  17971417 tgtgtatatttaatacttcacaaatttttaagagggtatatttgtaaaaacattcaaaa 17971359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 337 - 526
Target Start/End: Original strand, 32715686 - 32715874
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||||||||||||||||||||||||||| ||||||| | |||||||||||| | || |||||||| ||||||||||||||| ||||||| |||| |||    
T  32715686 tttggtcctatttataagaaaaagtcacaaattttaaggt-catttattgtttaaaagtcttttctagccctcatttaatgttgatcttttcaatattag 32715784  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 526  Q
    || ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| ||| |||||||| || ||||||||||||||    
T  32715785 tgggtatatttaatacttcacaaatttttatgaggatatatttgtaaaaacattcaaaaaattacaacaactaatgattgtcttggtttt 32715874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 338 - 526
Target Start/End: Complemental strand, 27442525 - 27442338
Alignment:
Q  338 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 437  Q
    |||||||||||||||||||||| |||||||||||||  || ||||| ||||| | |||||||||||||||||||||||||||  |||||  |||| || |    
T  27442525 ttggtcctatttataagaaaaaatcacaacttttaaagtatatttagtgtttaaaagacttttctaaccctcatttaatgttggtctttc-aatattaat 27442427  T
Q  438 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 526  Q
    | ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| |||||||||||| || ||||||||||||||    
T  27442426 gggtatatttaatacttcacaaatttttatgaggatatatttgtaaaaacattcaaaaaattgcaacaactaatgattgtcttggtttt 27442338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 338 - 524
Target Start/End: Complemental strand, 28724117 - 28723932
Alignment:
Q  338 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 437  Q
    ||||||| || |||||||||||||||||||||| | | | |||||||| ||| | |||||||||||||||||| ||||||||||||||||||||| ||||    
T  28724117 ttggtccaatatataagaaaaagtcacaactttaatg-tgcatttattatttaaaagacttttctaaccctcaattaatgtttatctttttaatattagt 28724019  T
Q  438 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtt 524  Q
    |  |||||||||||||||||||| |||||||||||||||| | ||||| ||||||||| ||| ||||  || || ||||||||||||    
T  28724018 ggttatatttaatacttcacaaatttttatgagggtatatctgtaaaagcattcaaaaaattacaaccgctaatgattgtcttggtt 28723932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 338 - 495
Target Start/End: Original strand, 3574720 - 3574879
Alignment:
Q  338 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 437  Q
    ||||||||||||||||||||| |||||||||||| | ||  | ||||||||| | | | || |||| ||||||||||||||||||| |||||||| || |    
T  3574720 ttggtcctatttataagaaaatgtcacaacttttcaaatgtagttattgtttaaaaaatttgtctacccctcatttaatgtttatcattttaatattaat 3574819  T
Q  438 gtgtat--atttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
     || ||  |||||||| |||||||  |||||| || ||||||||||||||||||||||||    
T  3574820 ttgaatgtatttaatatttcacaattttttataagagtatatttataaaaacattcaaaa 3574879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 352 - 495
Target Start/End: Original strand, 13603078 - 13603224
Alignment:
Q  352 aagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaat- 450  Q
    ||||||||||||||||||| ||| | |||||||||||  | |||||||||||||| ||| | || |||| ||||||||||| |||||  ||||||||||     
T  13603078 aagaaaaagtcacaacttt-aaggtgcatttattgttcaaaagacttttctaaccttcaataaaagtttgtctttttaatattagtggttatatttaata 13603176  T
Q  451 --acttcacaaaattttatgagggtatatttat-aaaaacattcaaaa 495  Q
      |||||||||| |||||||||||||||||| | ||||||||||||||    
T  13603177 atacttcacaaatttttatgagggtatatttgtaaaaaacattcaaaa 13603224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 337 - 486
Target Start/End: Complemental strand, 36437354 - 36437205
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||||||||||||||||||| |||||||||||||||  | | |||||| || | |||||||| || |||||||||||||| | ||||||||||| |||    
T  36437354 tttggtcctatttataagaaaatgtcacaacttttaag-gatagttattgcttaaaagacttttttatccctcatttaatgtctgtctttttaatattag 36437256  T
Q  437 tgtg-tatatttaatacttcacaaaattttatgagggtatatttataaaaa 486  Q
    || | | ||||||||  ||||||| ||| ||| ||||||||||| ||||||    
T  36437255 tgggatgtatttaatgtttcacaacattctataagggtatatttgtaaaaa 36437205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 450 - 526
Target Start/End: Complemental strand, 45691643 - 45691567
Alignment:
Q  450 tacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 526  Q
    ||||||||||| |||||||||||||||||| |||||| |||||||| ||| |||||||| || ||||||||||||||    
T  45691643 tacttcacaaatttttatgagggtatatttgtaaaaatattcaaaaaattacaacaactaataattgtcttggtttt 45691567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 341 - 495
Target Start/End: Complemental strand, 9851963 - 9851810
Alignment:
Q  341 gtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtg 440  Q
    |||||||||||||||||| ||||||||||||||  |  | |||||| || |  ||| ||| || |||| ||||||||||| |||||| |||| ||||| |    
T  9851963 gtcctatttataagaaaatgtcacaacttttaaagtgtagttattgcttaaatgacctttttatccct-atttaatgtttctcttttaaatattagtggg 9851865  T
Q  441 tatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    ||||||||||  ||||||  ||||||| | ||||||||| |||||| ||||||||    
T  9851864 tatatttaatgtttcacagtattttataaaggtatatttgtaaaaatattcaaaa 9851810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 348 - 486
Target Start/End: Complemental strand, 39150324 - 39150187
Alignment:
Q  348 ttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattt 447  Q
    |||||||||||  |||| ||||||||| |  | |||||| || | ||||||||||| |||| ||||||||||| | ||||||||| || || || |||||    
T  39150324 ttataagaaaatatcactacttttaaggtgtagttattgcttaaaagacttttctaccccttatttaatgtttttgtttttaatattaatgagtgtattt 39150225  T
Q  448 aatacttcacaaaattttatgagggtatatttataaaaa 486  Q
    ||| |||||| || |||||||||||||||||| ||||||    
T  39150224 aatgcttcac-aacttttatgagggtatatttgtaaaaa 39150187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 337 - 526
Target Start/End: Complemental strand, 28165280 - 28165091
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||| |||||||||| |||| ||||||||||| ||| || | |||||| || | ||| |||| || |||||||| | | ||||||||||||||| | |    
T  28165280 tttggttctatttataataaaatgtcacaactttaaaggtatagttattgcttaaaagatttttttacccctcattaagtctttatctttttaatattgg 28165181  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 526  Q
    |   | ||||||||  |||||||  |||||| ||||||||||| |||||| |||||||| ||| ||| || | || ||||| ||||||||    
T  28165180 tagatgtatttaatgtttcacaattttttataagggtatatttgtaaaaatattcaaaaaattacaataattgatgattgtattggtttt 28165091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 42454954 - 42454869
Alignment:
Q  410 atttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    |||||| |||| ||||||||||| ||||| || |||||||| ||||| ||  ||||||||||||||||||||||||| ||||||||    
T  42454954 atttaacgtttgtctttttaatattagtgagtgtatttaatgcttcataattttttatgagggtatatttataaaaatattcaaaa 42454869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 486
Target Start/End: Original strand, 42745537 - 42745685
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||||||||||||||||||| ||||||| |||| |  || | ||||||||| | | |||||| || ||||||||||| | ||  |||||||||| |||    
T  42745537 tttggtcctatttataagaaaatgtcacaatttttgaagtataattattgtttaaaatactttt-tatccctcatttaaggattgcctttttaatattag 42745635  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 486  Q
    ||  | ||||||||  ||||||| ||| ||| ||||||||||| ||||||    
T  42745636 tggatgtatttaatgtttcacaacattctataagggtatatttgtaaaaa 42745685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 495
Target Start/End: Complemental strand, 31181199 - 31181048
Alignment:
Q  345 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatg-tttatctttttaataatagtgtgtat 443  Q
    |||||||||||||| ||||||||||||||  || | ||||||||| | |||||||| ||  | |||||||||| ||| | ||||||||| ||| | || |    
T  31181199 tatttataagaaaatgtcacaacttttaacttatagttattgtttaaaagacttttttacacttcatttaatgttttttttttttaatattagcgagtgt 31181100  T
Q  444 atttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    |||||||  |||||||  || ||| |||||||| || |||||| ||||||||    
T  31181099 atttaatgtttcacaattttctataagggtatacttgtaaaaatattcaaaa 31181048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 427
Target Start/End: Complemental strand, 17988434 - 17988348
Alignment:
Q  341 gtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttt 427  Q
    |||||| ||||||||||| ||||||||||||||| |  | ||||||||| | |||||||| || |||| |||||||| || ||||||    
T  17988434 gtcctacttataagaaaatgtcacaacttttaaggtgtagttattgtttaaaagacttttttaccccttatttaatgcttctctttt 17988348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 340 - 495
Target Start/End: Original strand, 31152431 - 31152584
Alignment:
Q  340 ggtcctatttataagaaaaag-tcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtg 438  Q
    |||||||||||||| | |||  ||||||||||||||||    |||||| || | ||||||| ||| |||||||||||||||| || |||||||| |||||    
T  31152431 ggtcctatttataaaagaaatatcacaacttttaagatgtcgttattgcttaaaagactttgctacccctcatttaatgtttctc-ttttaatattagtg 31152529  T
Q  439 tgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
        ||||||||  |||||  | ||||||||| |||||||| |||||| ||||||||    
T  31152530 aacgtatttaatgtttcac--atttttatgagcgtatatttgtaaaaatattcaaaa 31152584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 374
Target Start/End: Complemental strand, 31003732 - 31003698
Alignment:
Q  340 ggtcctatttataagaaaaagtcacaacttttaag 374  Q
    ||||||||||||||||||| |||||||||||||||    
T  31003732 ggtcctatttataagaaaatgtcacaacttttaag 31003698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 495
Target Start/End: Original strand, 46443700 - 46443851
Alignment:
Q  342 tcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgt 441  Q
    ||||||||||||||||| ||||||||||||||| |  | |||||  || | | |||||| || ||||||||| ||  || ||||||||||  |||||  |    
T  46443700 tcctatttataagaaaacgtcacaacttttaaggtgtaattattacttaaaaaacttttttatccctcattt-atagttctctttttaatgttagtgaat 46443798  T
Q  442 atatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
     ||| ||||  ||||| || ||||||| |||||||||| |||||| ||||||||    
T  46443799 gtatataatgtttcac-aatttttatgtgggtatatttgtaaaaatattcaaaa 46443851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 342 - 526
Target Start/End: Complemental strand, 14200516 - 14200333
Alignment:
Q  342 tcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgt 441  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||| | |||||||| |||||||||||||||||| ||||||| |||| ||||| ||    
T  14200516 tcctatttataagaaaa-gtcacaacttttaagatacatttattatttaaaagacttttttaaccctcatttaatgttgatcttttcaatattagtgagt 14200418  T
Q  442 atatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 526  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||   | |||| || ||||||||||||||    
T  14200417 atatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattaggataactaatgattgtcttggtttt 14200333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 344 - 526
Target Start/End: Original strand, 7011095 - 7011274
Alignment:
Q  344 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtat 443  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||    |||||||| |||| ||||| ||||    
T  7011095 ctatttataagaaaaagtcacaatttttaagatacatttattgtttaaaagacttttctaaccctcatttaa----tatcttttcaatattagtgggtat 7011190  T
Q  444 atttaatacttcacaaaattttatgagggtatatttataaaaacattc-aaaacattgcaacaacttatcattgtcttggtttt 526  Q
    ||||||||||||||||| ||||||||| |||||||| ||||||||||| |||| ||||||||||||  | ||||||||| ||||    
T  7011191 atttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaaattgcaacaactactgattgtcttgatttt 7011274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 349 - 526
Target Start/End: Original strand, 32872346 - 32872523
Alignment:
Q  349 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattta 448  Q
    |||||||||||||    ||||||||| |||||||||||||| | ||||||||| |||||| ||||||||||| || |||||||| ||||| |||||||||    
T  32872346 tataagaaaaagttgtgacttttaagttacatttattgtttaaaagacttttccaaccctaatttaatgtttgtccttttaatattagtgggtatattta 32872445  T
Q  449 atacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 526  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||| ||| |||| ||| || ||||||||||||||    
T  32872446 atacttcacaattttttatgagggtatatttgtaaaaacattcaaaaaattacaaccactaatgattgtcttggtttt 32872523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 349 - 495
Target Start/End: Original strand, 31404951 - 31405096
Alignment:
Q  349 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatattta 448  Q
    ||||||||||||||| |  ||||||| |||||||||| ||| | |||||||||||||||||||||||| ||| ||||||||||| |||||  ||||||||    
T  31404951 tataagaaaaagtcatat-ttttaaggtacatttattttttaaaagacttttctaaccctcatttaatatttgtctttttaatattagtgcatatattta 31405049  T
Q  449 atacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    |||||||| ||| || ||||||| ||||||| |||||| ||||||||    
T  31405050 atacttcataaatttctatgaggatatatttgtaaaaatattcaaaa 31405096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 337 - 495
Target Start/End: Original strand, 38214106 - 38214264
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||||| |||||||||||||| |||||||||||||| |  ||||||||||| | |||||||| || ||||||||||||  || ||||||||||| |||    
T  38214106 tttggtccaatttataagaaaaattcacaacttttaaggtgtatttattgtttaaaagacttttatatccctcatttaatacttctctttttaatattag 38214205  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    | ||| ||||||||  |||||||  |||||||||| ||||||| |||||| ||||||||    
T  38214206 tatgtgtatttaatgtttcacaattttttatgaggatatatttgtaaaaatattcaaaa 38214264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 338 - 495
Target Start/End: Complemental strand, 39063748 - 39063591
Alignment:
Q  338 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 437  Q
    ||||||| |||||||||||||| |||||||||||||| |  ||||||||||| | |||||||| ||   ||||||||||  || ||||||||||| ||||    
T  39063748 ttggtccaatttataagaaaaattcacaacttttaaggtgtatttattgtttaaaagacttttatattgctcatttaatacttctctttttaatattagt 39063649  T
Q  438 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    |||| ||||||||  |||||||  |||||||||| ||||||| |||||| ||||||||    
T  39063648 gtgtgtatttaatgtttcacaattttttatgaggttatatttgtaaaaatattcaaaa 39063591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 337 - 495
Target Start/End: Original strand, 40442711 - 40442869
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||| ||||||||||||||||| ||||||||||||||| |  | ||||||||| | | |||||| || |||| ||||| ||||||||||||||||| |||    
T  40442711 tttgatcctatttataagaaaatgtcacaacttttaaggtgtaattattgtttaaaaaacttttataccccttatttattgtttatctttttaatattag 40442810  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    |  ||  ||||||| ||||||||  |||||| ||||||||| |||||||| ||||||||    
T  40442811 taggtgcatttaatgcttcacaactttttataagggtatatctataaaaatattcaaaa 40442869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 337 - 495
Target Start/End: Original strand, 40503868 - 40504026
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||||| ||||||||||||| ||||||||||||||| |  | ||||||||| | | |||||| || |||| ||||| ||||| ||||||||||| |||    
T  40503868 tttggtcccatttataagaaaatgtcacaacttttaaggtgtaattattgtttaaaaaacttttataccccttatttattgtttgtctttttaatattag 40503967  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    |  ||  ||||||| ||||||||  |||||||||||||||| | |||||| ||||||||    
T  40503968 taggtgcatttaatgcttcacaactttttatgagggtatatctgtaaaaatattcaaaa 40504026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 341 - 495
Target Start/End: Original strand, 38496470 - 38496624
Alignment:
Q  341 gtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtg 440  Q
    |||||||||||||||||| |||| || ||||||| || | ||||||||| | |||| |||||| |||| |||||| |||| | ||||||||| ||||  |    
T  38496470 gtcctatttataagaaaatgtcagaatttttaaggtatagttattgtttaaaagacctttctaccccttatttaacgtttgtatttttaatattagtagg 38496569  T
Q  441 tatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    | ||||||||  ||| || | |||||| ||||||||||| |||||| ||||||||    
T  38496570 tgtatttaatgtttcgcacatttttatcagggtatatttgtaaaaatattcaaaa 38496624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 44173721 - 44173636
Alignment:
Q  410 atttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    ||||||||||||||||||||||| |||||  |||| ||||||||| ||||||||||  |||||||||||| |||||||||| ||||    
T  44173721 atttaatgtttatctttttaatattagtgaatatagttaatactttacaaaattttccgagggtatatttctaaaaacatttaaaa 44173636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 355 - 525
Target Start/End: Complemental strand, 2287654 - 2287486
Alignment:
Q  355 aaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatactt 454  Q
    ||||||||||||||||||| ||| |||||||  || | |||||||| ||||| || |||||| ||| | ||||||||| ||||  |||||||||||| ||    
T  2287654 aaaaagtcacaacttttaaaatatatttatttgttaaaagactttt-taaccttcgtttaatatttttttttttaatattagta-gtatatttaatattt 2287557  T
Q  455 cacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggttt 525  Q
     ||||| ||  ||||  ||||| ||||||||||||||||||  ||||||| | | || |||||||||||||    
T  2287556 tacaaatttcgatgaaagtataattataaaaacattcaaaatgttgcaactattaattattgtcttggttt 2287486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 337 - 495
Target Start/End: Original strand, 3268791 - 3268949
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||||| | |||||||||||  |||||||||||||| |  | ||||||  | | ||||||||||| |||| ||||||||||| | ||||||||| ||     
T  3268791 tttggtccaaattataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaa 3268890  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    |  || |||||||  ||||||||  |||||| ||||||||||| |||||| ||||||||    
T  3268891 taggtgtatttaaggcttcacaactttttataagggtatatttgtaaaaatattcaaaa 3268949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 337 - 495
Target Start/End: Original strand, 3269350 - 3269508
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||||| | |||||||||||  |||||||||||||| |  | ||||||  | | ||||||||||| |||| ||||||||||| | ||||||||| ||     
T  3269350 tttggtccaaattataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaa 3269449  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    |  || |||||||  ||||||||  |||||| ||||||||||| |||||| ||||||||    
T  3269450 taggtgtatttaaggcttcacaactttttataagggtatatttgtaaaaatattcaaaa 3269508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 337 - 495
Target Start/End: Original strand, 3269909 - 3270067
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||||| | |||||||||||  |||||||||||||| |  | ||||||  | | ||||||||||| |||| ||||||||||| | ||||||||| ||     
T  3269909 tttggtccaaattataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaa 3270008  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    |  || |||||||  ||||||||  |||||| ||||||||||| |||||| ||||||||    
T  3270009 taggtgtatttaaggcttcacaactttttataagggtatatttgtaaaaatattcaaaa 3270067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 355 - 438
Target Start/End: Original strand, 34262721 - 34262803
Alignment:
Q  355 aaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtg 438  Q
    ||||||| |||| ||||||| | |||||||||||| | |||||||||||||||||| ||||||||| ||||||||||| |||||    
T  34262721 aaaaagtaacaa-ttttaaggttcatttattgtttaaaagacttttctaaccctcaattaatgtttgtctttttaatattagtg 34262803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 443 - 526
Target Start/End: Original strand, 34309311 - 34309394
Alignment:
Q  443 tatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 526  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||||||||| ||| |||  ||| || ||||||||| ||||    
T  34309311 tatttaatacttcacaaatttttatgagggtatatttgtaaaagcattcaaaaaattacaatcactaatgattgtcttgatttt 34309394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 355 - 525
Target Start/End: Complemental strand, 2315677 - 2315509
Alignment:
Q  355 aaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatactt 454  Q
    ||||||||||||||| ||| ||| |||||||  || | |||||||| ||||| || |||||| ||| ||||||||||| || |  |||||||||||| ||    
T  2315677 aaaaagtcacaacttataaaatatatttattagttaaaagactttt-taaccttcgtttaatatttctctttttaatattaata-gtatatttaatattt 2315580  T
Q  455 cacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggttt 525  Q
     ||||| ||  ||||  ||||| ||||||||||||||||||  ||||||| | | || |||||||||||||    
T  2315579 tacaaatttcgatgaaagtataattataaaaacattcaaaatgttgcaactattaattattgtcttggttt 2315509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 479
Target Start/End: Original strand, 16781256 - 16781396
Alignment:
Q  338 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 437  Q
    |||||| ||||||||||||||||||||||| |||||| || | ||| ||||| | |||||||||||  ||| | ||||||||| ||||| ||||| ||||    
T  16781256 ttggtcatatttataagaaaaagtcacaac-tttaaggtataattaatgtttaaaagacttttctacgccttagttaatgtttgtctttgtaatattagt 16781354  T
Q  438 gtgtatatttaatacttcacaaaattttatgagggtatattt 479  Q
      || ||||||||  ||||| |  ||| ||||||||||||||    
T  16781355 aggtgtatttaatgtttcaccatttttaatgagggtatattt 16781396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 345 - 495
Target Start/End: Complemental strand, 4015934 - 4015785
Alignment:
Q  345 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtata 444  Q
    ||||||||||||||||||||||| | ||||||| | ||| ||||| | ||||||||||| |||| | ||||||||| ||||| ||||| ||||  ||  |    
T  4015934 tatttataagaaaaagtcacaac-tctaagatatagttaatgtttaaaagacttttctaccccttagttaatgtttgtctttgtaatattagtaggtgca 4015836  T
Q  445 tttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    ||||||  |||| ||  ||| | ||||||||||||||| ||  ||||||||    
T  4015835 tttaatgtttcataatttttaacgagggtatatttatataattattcaaaa 4015785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 338 - 495
Target Start/End: Original strand, 40664228 - 40664386
Alignment:
Q  338 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatc-tttttaataatag 436  Q
    ||||||| ||| |||||||||  |||||||| ||||  |  ||||||| ||| | |||||||| || ||||||||||||| || || ||||||| | | |    
T  40664228 ttggtccaattgataagaaaatttcacaactcttaaagtgtatttattatttaaaagacttttatatccctcatttaatgcttctcttttttaacattgg 40664327  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    ||||| ||||||||  |||||||  ||||| |||||||||||| ||| || ||||||||    
T  40664328 tgtgtgtatttaatgtttcacaattttttacgagggtatatttgtaagaatattcaaaa 40664386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 405 - 526
Target Start/End: Complemental strand, 45724004 - 45723883
Alignment:
Q  405 ccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaac 504  Q
    |||||||||||| ||  |||||| |||| ||||  ||||||||||||||| | ||| |||||||| | ||||||| ||| ||||||||||| |||  | |    
T  45724004 ccctcatttaatattggtcttttcaatattagtaggtatatttaatactttataaatttttatgaagatatatttgtaacaacattcaaaaaattagagc 45723905  T
Q  505 aacttatcattgtcttggtttt 526  Q
    |||| || ||||| ||||||||    
T  45723904 aactaatgattgttttggtttt 45723883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 435
Target Start/End: Complemental strand, 3711992 - 3711895
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataata 435  Q
    |||||| ||||||||||||||| |||||||||||||||  | | ||||||||| | |||||||| || | || ||||||||| ||||||| ||| ||||    
T  3711992 tttggttctatttataagaaaatgtcacaacttttaag-gatagttattgtttaaaagacttttttatcgcttatttaatgtatatctttgtaaaaata 3711895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 495
Target Start/End: Original strand, 21794914 - 21794988
Alignment:
Q  422 tctttttaataatagtgtgtatatttaatacttcacaaaatttt-atgagggtatatttataaaaacattcaaaa 495  Q
    ||||||||||| |||||||| ||||||||  |||||||  |||| |||||||||||||| |||||| ||||||||    
T  21794914 tctttttaatattagtgtgtgtatttaatgtttcacaatttttttatgagggtatatttgtaaaaatattcaaaa 21794988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 374
Target Start/End: Original strand, 21794849 - 21794886
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaag 374  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  21794849 tttggtccaatttataagaaaaattcacaacttttaag 21794886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 338 - 389
Target Start/End: Original strand, 35310800 - 35310852
Alignment:
Q  338 ttggtcctatttataagaaaaagtc-acaacttttaagatacatttattgttt 389  Q
    ||||| |||||||||||||||| || || |||||||||||| |||||||||||    
T  35310800 ttggttctatttataagaaaaaatccactacttttaagatatatttattgttt 35310852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 337 - 526
Target Start/End: Complemental strand, 38209674 - 38209485
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||||  |||||| |||| |||    
T  38209674 tttggtcatatttataagaaaaagtcacaacttttaaggtacatttattgtttaaaagacttctctaaccctcatttaatgttggtcttttcaatattag 38209575  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 526  Q
    || ||||||| ||||||||||||| |||||  |||||||||||||||||| ||| |||| ||| |||||| | || ||| ||||||||||    
T  38209574 tgggtatattaaatacttcacaaatttttaaaagggtatatttataaaaatatttaaaaaatttcaacaagtaatgattatcttggtttt 38209485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 337 - 526
Target Start/End: Complemental strand, 36408339 - 36408151
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    ||||||| ||| |||||||||||||||||||||| ||| |||||||||||||| ||| |||||| |||||||| |||||||||| ||||||||||| |||    
T  36408339 tttggtcttatatataagaaaaagtcacaacttt-aaggtacatttattgtttaacaaacttttttaaccctcgtttaatgtttgtctttttaatattag 36408241  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 526  Q
    ||  |||| ||||||||| ||||| |||||||||||||||||| ||||||||||||||| |||  ||| ||| || |||||||| |||||    
T  36408240 tggatataattaatacttaacaaatttttatgagggtatatttgtaaaaacattcaaaaaattataactactaataattgtcttagtttt 36408151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 337 - 486
Target Start/End: Original strand, 36054809 - 36054958
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||||||||||||||||||| ||||||||||||||| || ||||||||||| | |||||||| || |||| | ||||||||| ||||||||||| |||    
T  36054809 tttggtcctatttataagaaaatgtcacaacttttaaggtatatttattgtttaaaagacttttataccccttaattaatgtttgtctttttaatattag 36054908  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 486  Q
    ||  | ||||||||||||| |||  ||| || ||||||||||||||||||    
T  36054909 tggatgtatttaatacttcccaatttttaataagggtatatttataaaaa 36054958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 397 - 526
Target Start/End: Original strand, 5923871 - 5924004
Alignment:
Q  397 ttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgaggg----tatatttataaaaacattca 492  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||| |||||||||||    ||||||| |||||||||| |    
T  5923871 ttttctaaccctcatttaatgtttgtctttttaatattagtgtgtataattaatactttacaaatttttatgagggcatatatatttttaaaaacattta 5923970  T
Q  493 aaacattgcaacaacttatcattgtcttggtttt 526  Q
    ||| ||| | || ||| || ||| ||||||||||    
T  5923971 aaaaattactaccactaatgattatcttggtttt 5924004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 337 - 495
Target Start/End: Original strand, 8251229 - 8251387
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    ||||||||||||||||||||||  |||||||||||||| |  | |||||| || | |||| ||| |  || | |||||||| || ||||||||||| |||    
T  8251229 tttggtcctatttataagaaaatatcacaacttttaaggtgtaattattgcttaaaagacctttttccccattatttaatggttgtctttttaatattag 8251328  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    || || |||||||| ||||||||  |||||||||||||||||| |||||| ||||||||    
T  8251329 tgagtttatttaatgcttcacaattttttatgagggtatatttgtaaaaatattcaaaa 8251387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 338 - 495
Target Start/End: Original strand, 31658847 - 31659003
Alignment:
Q  338 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 437  Q
    ||||| |||||||||||||||  ||||||||||||||||  | ||||||||| | |||||||| ||||| | ||||||||||| ||||||||||| ||||    
T  31658847 ttggttctatttataagaaaatatcacaacttttaagatgtagttattgtttaaaagacttttttaacctttatttaatgtttgtctttttaatactagt 31658946  T
Q  438 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    |  | |||||||| || ||  || |||||||||| ||||||| |||||| ||||||||    
T  31658947 ggatgtatttaatgctgca-taatttttatgaggatatatttgtaaaaatattcaaaa 31659003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 338 - 495
Target Start/End: Original strand, 2207766 - 2207921
Alignment:
Q  338 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 437  Q
    ||||||||||||||| |||||  |||||| ||||||||| || ||||||  | | ||| ||||||| |||| ||||||||||| | ||||||||| || |    
T  2207766 ttggtcctatttata-gaaaatatcacaatttttaagatgcagttattgcgttaaagaattttctaccccttatttaatgtttgtatttttaatattaat 2207864  T
Q  438 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    | || |||||||| |||||| || |||||||||||||||||| |||||| ||||||||    
T  2207865 gggtgtatttaatgcttcac-aatttttatgagggtatatttgtaaaaatattcaaaa 2207921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 393 - 495
Target Start/End: Original strand, 2152369 - 2152472
Alignment:
Q  393 agacttttctaaccctcatttaatgtttatcttttt-aataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattc 491  Q
    ||||||||||| |||| ||||||||||||||||||| |||| ||| | || |||||||| ||||||||  |||||| |||||||||||||||||| ||||    
T  2152369 agacttttctaccccttatttaatgtttatcttttttaatattagcgagtctatttaatgcttcacaattttttataagggtatatttataaaaatattc 2152468  T
Q  492 aaaa 495  Q
    ||||    
T  2152469 aaaa 2152472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 338 - 495
Target Start/End: Complemental strand, 16890425 - 16890265
Alignment:
Q  338 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatcttttt---aataat 434  Q
    ||||||||||||||| |||||  |||||||||||||| || | ||| ||||| | ||||||||||| || | ||||| ||||| | |||||   |||| |    
T  16890425 ttggtcctatttatatgaaaatatcacaacttttaaggtatagttagtgtttcaaagacttttctaccctttatttattgtttgtttttttataaatatt 16890326  T
Q  435 agtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    |||| || ||||||||  |||||||  |||||||||||||||||| |||||| ||||||||    
T  16890325 agtgagtttatttaatgtttcacaattttttatgagggtatatttgtaaaaatattcaaaa 16890265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 340 - 495
Target Start/End: Original strand, 1445349 - 1445504
Alignment:
Q  340 ggtcctatttataagaaaaagtcacaacttttaagat-acatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtg 438  Q
    ||||||||||||||||||| ||||||||||||||| |   | |||||| || |  |||||||||| |||| ||||||||||| ||||||  ||| |||||    
T  1445349 ggtcctatttataagaaaatgtcacaacttttaaggtgtaagttattgcttaaatgacttttctatccct-atttaatgtttctcttttagatattagtg 1445447  T
Q  439 tgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
     || ||||||||  |||||||  ||| |||| ||||||||| |||||  ||||||||    
T  1445448 agtgtatttaatgtttcacaatttttaatgaaggtatatttgtaaaagtattcaaaa 1445504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 422 - 495
Target Start/End: Complemental strand, 30653701 - 30653628
Alignment:
Q  422 tctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    ||||||||||| |||| ||| ||||||||  |||||||| |||||||||||||||||| |||||  ||||||||    
T  30653701 tctttttaatactagtttgtgtatttaatgtttcacaaatttttatgagggtatatttgtaaaattattcaaaa 30653628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 21504936 - 21504882
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttga 391  Q
    |||||||| ||||||||||||| || ||||||||||||||  |||||||||||||    
T  21504936 tttggtccaatttataagaaaatgttacaacttttaagatgtatttattgtttga 21504882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 339 - 432
Target Start/End: Complemental strand, 30112578 - 30112485
Alignment:
Q  339 tggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 432  Q
    |||||||||||||||||||| ||||||| ||||||| |  | |||||| || | ||| |||| || ||||| |||||||| | |||||||||||    
T  30112578 tggtcctatttataagaaaatgtcacaaattttaaggtgtagttattgcttaaaagatttttttatccctcgtttaatgtatgtctttttaata 30112485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 432
Target Start/End: Original strand, 4641095 - 4641131
Alignment:
Q  396 cttttctaaccctcatttaatgtttatctttttaata 432  Q
    ||||||||||||||||||||||||| |||||||||||    
T  4641095 cttttctaaccctcatttaatgtttgtctttttaata 4641131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 373
Target Start/End: Original strand, 35431579 - 35431614
Alignment:
Q  338 ttggtcctatttataagaaaaagtcacaacttttaa 373  Q
    ||||||||||||||||||||| ||||||||||||||    
T  35431579 ttggtcctatttataagaaaatgtcacaacttttaa 35431614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 345 - 526
Target Start/End: Complemental strand, 25376991 - 25376810
Alignment:
Q  345 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtata 444  Q
    |||||| ||||||||||||||  ||||||| || | ||||||||| | ||||||||||||||||||||||||||| ||||||| |||| | ||| |||||    
T  25376991 tatttacaagaaaaagtcacagattttaaggtataattattgtttaaaagacttttctaaccctcatttaatgttgatcttttcaatatttgtgagtata 25376892  T
Q  445 tttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 526  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||||||| ||| |||||||| || ||||||||||||||    
T  25376891 tttaatacttcacaaatttttaagagggtatatttgtaaaaacattcaaaaaattacaacaactaatgattgtcttggtttt 25376810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 337 - 486
Target Start/End: Original strand, 18838745 - 18838893
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||| |||||||| |||||| |||| |||||||||| || | ||||||||| | ||||||||||| ||||||||||||| |||||||||||||| |||    
T  18838745 tttggttctatttatgagaaaatgtcataacttttaaggtataattattgtttaaaagacttttcta-ccctcatttaatgattatctttttaatattag 18838843  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 486  Q
    || || ||||||||  |||||||  |||||||||||||||||| ||||||    
T  18838844 tgggtgtatttaatgtttcacaattttttatgagggtatatttgtaaaaa 18838893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 338 - 438
Target Start/End: Original strand, 54863918 - 54864018
Alignment:
Q  338 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 437  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |||||||||| ||||||||||||| ||||||| |||| ||||    
T  54863918 ttggtcctatttataagaaaaagtcacaacttttaaggtacatttattgtttaaaaggcttttctaactctcatttaatgttgatcttttcaatattagt 54864017  T
Q  438 g 438  Q
    |    
T  54864018 g 54864018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 345 - 443
Target Start/End: Original strand, 21128097 - 21128195
Alignment:
Q  345 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtat 443  Q
    |||||||||||||| |||| |||||||||  || ||||||| ||| | ||||||||| ||||||||||| |||||||||||||| ||| ||||| ||||    
T  21128097 tatttataagaaaatgtcataacttttaatgtatatttattttttaaaagacttttccaaccctcattttatgtttatcttttttatattagtgagtat 21128195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 394 - 526
Target Start/End: Original strand, 25382400 - 25382531
Alignment:
Q  394 gacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaa 493  Q
    ||||||| || |||| ||||||||||  |||||||| || ||||| |||| |||||||||||||||| ||| || ||||||||||| | |||||||||||    
T  25382400 gacttttgtagcccttatttaatgttagtctttttagtattagtgagtatttttaatacttcacaaattttcataagggtatatttgt-aaaacattcaa 25382498  T
Q  494 aacattgcaacaacttatcattgtcttggtttt 526  Q
    || ||||| | || | || ||||||||| ||||    
T  25382499 aaaattgccataattaattattgtcttgatttt 25382531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 495
Target Start/End: Complemental strand, 31707448 - 31707349
Alignment:
Q  393 agacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattca 492  Q
    ||||||||||| |||| ||||||||||| ||||||||||| ||||| || |||   || ||||| ||| |||||||||||||||||| |||||| |||||    
T  31707448 agacttttctaccccttatttaatgtttgtctttttaatattagtgggtgtat---atgcttcataaatttttatgagggtatatttgtaaaaatattca 31707352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 486
Target Start/End: Original strand, 16572251 - 16572391
Alignment:
Q  343 cctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgta 442  Q
    |||||||||||||||| ||||||||||||||| |  | |||||| || ||||| |||| || |||||||||||||  | | ||||||||| ||||   |     
T  16572251 cctatttataagaaaatgtcacaacttttaaggtgtagttattgcttaacagaattttttatccctcatttaatgactgtatttttaatattagt---tg 16572347  T
Q  443 tatttaatacttcacaaaattttatgagggtatatttataaaaa 486  Q
    ||||||||| ||||||| ||| ||| | ||||||||| ||||||    
T  16572348 tatttaatatttcacaatattctataatggtatatttttaaaaa 16572391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 432
Target Start/End: Complemental strand, 33721768 - 33721675
Alignment:
Q  339 tggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 432  Q
    |||||||||||||||||||| ||||||| ||||||  |  | ||||||||| | ||||||||||| | ||| ||||||||||||| ||||||||    
T  33721768 tggtcctatttataagaaaatgtcacaatttttaatgtgtagttattgtttaaaagacttttctacctctcgtttaatgtttatccttttaata 33721675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 338 - 475
Target Start/End: Original strand, 34319546 - 34319682
Alignment:
Q  338 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 437  Q
    ||||||||||||||||||||| ||||||| ||||||  | |  ||||||||| | |  ||||||| ||||| ||||||||||| ||||||||||| |  |    
T  34319546 ttggtcctatttataagaaaatgtcacaatttttaaagtgcggttattgtttaaaaagcttttct-acccttatttaatgtttttctttttaatatttat 34319644  T
Q  438 gtgtatatttaatacttcacaaaattttatgagggtat 475  Q
    |  ||||||||||  || ||||  ||||||||||||||    
T  34319645 ggatatatttaatgttttacaattttttatgagggtat 34319682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 432
Target Start/End: Complemental strand, 44884507 - 44884411
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaactttt--aagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 432  Q
    ||||||||||| |||||||||| ||||||||||||  ||| |  | ||||||||| | |||||||| || ||||||||||||||||  ||||||||||    
T  44884507 tttggtcctatatataagaaaatgtcacaacttttttaaggtgtagttattgtttaaaagactttt-tatccctcatttaatgtttgcctttttaata 44884411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 494
Target Start/End: Complemental strand, 42312564 - 42312399
Alignment:
Q  337 tttggtcctatttataagaaaa-agtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatcttttt------- 428  Q
    ||||||| ||||||||| |||| | |||||||||||||| || | |||||| || | ||||||||||| || |  ||| |||||| |||||||           
T  42312564 tttggtcttatttataaaaaaataatcacaacttttaaggtatagttattgcttaaaagacttttctatcctttgttttatgtttgtctttttttttttt 42312465  T
Q  429 aataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaa 494  Q
    |||| ||| |  ||||||| || ||||||||  |||||||||||||||||| |||||| |||||||    
T  42312464 aatattagaggatatattttatgcttcacaattttttatgagggtatatttgtaaaaatattcaaa 42312399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 419
Target Start/End: Complemental strand, 47231718 - 47231644
Alignment:
Q  345 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtt 419  Q
    |||||||||||||| ||||  |||||||||||| ||||||||||| | ||| |||| || | || ||||||||||    
T  47231718 tatttataagaaaatgtcaatacttttaagatatatttattgtttaaaagatttttttacctcttatttaatgtt 47231644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 6e-48; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 337 - 526
Target Start/End: Complemental strand, 30041460 - 30041272
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||||| || ||| ||||||||| |||||||| ||| || ||||||||||| | |||||||||||||||| | ||||||||| ||||||||||| |||    
T  30041460 tttggtccaatatattagaaaaagtgacaacttt-aaggtatatttattgtttaaaagacttttctaacccttaattaatgtttgtctttttaatattag 30041362  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 526  Q
    ||  ||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||| |||| ||| || ||||||||||||||    
T  30041361 tggttatatttaatacttcacaaatctttatgagggtatatttataaaaacattcaaaaaattacaaccactaatgattgtcttggtttt 30041272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 397 - 525
Target Start/End: Original strand, 35104722 - 35104850
Alignment:
Q  397 ttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaac 496  Q
    |||||||||| ||||||||||||  |||||| |||| ||||||||||||||||||| ||| ||||||||| |||||||||||| || ||||||||||||     
T  35104722 ttttctaaccttcatttaatgttggtcttttcaatattagtgtgtatatttaatacctcaaaaaattttaagagggtatatttgtacaaacattcaaaaa 35104821  T
Q  497 attgcaacaacttatcattgtcttggttt 525  Q
    |||||||||||| || |||||||||||||    
T  35104822 attgcaacaactaataattgtcttggttt 35104850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 349 - 432
Target Start/End: Original strand, 49983561 - 49983644
Alignment:
Q  349 tataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 432  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||    
T  49983561 tataagaaaaagtcacaacttttaagatacatttattgtttaaaagacttttctaaccctcatttaatgtttgtctttttaata 49983644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 337 - 495
Target Start/End: Original strand, 41559980 - 41560132
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||||| || ||||||||||| ||| || |||||||||||||||||  ||| | |||||||| |||| |||||||||||||| ||||| ||||| |||    
T  41559980 tttggtccaatatataagaaaaaatcataatttttaagatacatttatgatttaaaagacttttttaactctcatttaatgtttgtctttctaatattag 41560079  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    || |      | |||||||||||| |||||||| |||||||||||||||||||||||||    
T  41560080 tgag------ttatacttcacaaatttttatgaaggtatatttataaaaacattcaaaa 41560132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 405 - 495
Target Start/End: Complemental strand, 43105234 - 43105144
Alignment:
Q  405 ccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    ||||||||||||||| ||||||| |||| ||||| |||||||| |||||||||||| |||||||||||||||||| |||||||||||||||    
T  43105234 ccctcatttaatgttgatcttttcaatattagtgggtatatttgatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaa 43105144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 337 - 495
Target Start/End: Original strand, 45261357 - 45261512
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||||||||||||||||||| ||||||||||||||| |  | |||||| || |  |||||||||| |||| ||||||||||| |||||| |||| |||    
T  45261357 tttggtcctatttataagaaaatgtcacaacttttaagctgtagttattgcttaaatgacttttctatccct-atttaatgtttctcttttaaatattag 45261455  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    || || ||||||||  |||||  |||||| ||||||||||||| ||||||  |||||||    
T  45261456 tgggtgtatttaatgtttcac--aattttttgagggtatatttgtaaaaatgttcaaaa 45261512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 337 - 495
Target Start/End: Complemental strand, 40345085 - 40344929
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||| |||||| |||||||||| ||||||||||||||| |  | | |||| || | |||||||| || |||||||||||| ||| ||||||||||| |||    
T  40345085 tttgttcctatctataagaaaatgtcacaacttttaaggtgtagtcattgcttaagagacttttatacccctcatttaatatttgtctttttaatattag 40344986  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    || |  ||||||||  |||||||  |||||| ||||||||||| |||||| ||||||||    
T  40344985 tgag--tatttaatggttcacaattttttataagggtatatttgtaaaaatattcaaaa 40344929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 345 - 486
Target Start/End: Original strand, 22923629 - 22923773
Alignment:
Q  345 tatttataagaaaaagtcacaacttttaagatac---atttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgt 441  Q
    ||||||||||||||||| ||||||| ||||||||   |||||||| || |  ||| ||||||| | | |||||||  | |||||||||||| ||||  ||    
T  22923629 tatttataagaaaaagttacaacttgtaagatactatatttattggttaaaggacatttctaatcataatttaattgtgatctttttaatattagtaggt 22923728  T
Q  442 atatttaatacttcacaaaattttatgagggtatatttataaaaa 486  Q
    ||||||||||| ||||||| |||||||| ||||||||| ||||||    
T  22923729 atatttaatacatcacaaatttttatgaaggtatatttgtaaaaa 22923773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 422 - 526
Target Start/End: Original strand, 49983786 - 49983892
Alignment:
Q  422 tctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatattt---ataaaaacattcaaaacattgcaacaacttatcattgtc 518  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||   | |||||||||||||| ||| |||  ||| || ||||||    
T  49983786 tctttttaatattagtgggtatatttaatacttcacaaatttttatgagggtatatttgtaaaaaaaacattcaaaa-attacaatcactaatgattgtc 49983884  T
Q  519 ttggtttt 526  Q
    ||||||||    
T  49983885 ttggtttt 49983892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 377 - 508
Target Start/End: Original strand, 30577821 - 30577952
Alignment:
Q  377 acatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtata 476  Q
    ||||||||| ||| | |||| |||||| |||||||||||||||  |||||| || | ||||   |||||||||||||||||  | |||||||| ||||||    
T  30577821 acatttattatttaaaagacgtttctatccctcatttaatgttggtcttttcaacattagtagatatatttaatacttcactcatttttatgatggtata 30577920  T
Q  477 tttataaaaacattcaaaacattgcaacaact 508  Q
    ||| |||||||||| |||| ||| ||||||||    
T  30577921 tttgtaaaaacatttaaaaaattacaacaact 30577952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 345 - 415
Target Start/End: Complemental strand, 43106004 - 43105935
Alignment:
Q  345 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaa 415  Q
    |||||||||||||||||||||||||||||| |  ||||||||||| | |||||||||||||||||||||||    
T  43106004 tatttataagaaaaagtcacaacttttaaggt-tatttattgtttaaaagacttttctaaccctcatttaa 43105935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 339 - 495
Target Start/End: Complemental strand, 17003729 - 17003574
Alignment:
Q  339 tggtcctatttataagaaaaa-gtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 437  Q
    ||||||||||||||| ||||| ||||||||||||||| |  | |||||| || |  ||||||| || |||| ||||||||||| |||||| |||| ||||    
T  17003729 tggtcctatttataaaaaaaatgtcacaacttttaaggtgtagttattgcttaaatgacttttttatccct-atttaatgtttctcttttaaatattagt 17003631  T
Q  438 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    | || | ||||||  |||||||  |||||||||||||||||| |||||| ||||||||    
T  17003630 gggtgtgtttaatgtttcacaat-ttttatgagggtatatttgtaaaaatattcaaaa 17003574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 338 - 447
Target Start/End: Complemental strand, 32211943 - 32211834
Alignment:
Q  338 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 437  Q
    |||||| ||||||||||||||  |||||||||||||| |  | ||||||||| | ||||||||||| || | ||||||||||| ||||||||||| ||||    
T  32211943 ttggtcttatttataagaaaatttcacaacttttaaggtgtagttattgtttaaaagacttttctacccgttatttaatgtttgtctttttaatattagt 32211844  T
Q  438 gtgtatattt 447  Q
    | || |||||    
T  32211843 gggtgtattt 32211834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 508
Target Start/End: Original strand, 24650120 - 24650285
Alignment:
Q  341 gtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtg 440  Q
    ||||||||||||| ||||  | |||||||||||| || ||||||||||  | | |||||| ||||| || |||||| ||| ||||||||||| ||||| |    
T  24650120 gtcctatttataaaaaaa--ttacaacttttaaggtatatttattgttaaaaaaacttttttaaccttcttttaatttttgtctttttaatattagtgag 24650217  T
Q  441 tatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaact 508  Q
     |||||||||| |||||||  |||||| |  |||||||| |||||  ||  |||| ||||||||||||    
T  24650218 catatttaatatttcacaattttttataaaagtatatttgtaaaagtataaaaaaaattgcaacaact 24650285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 338 - 495
Target Start/End: Complemental strand, 8825511 - 8825356
Alignment:
Q  338 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatg--tttatctttttaataata 435  Q
    ||||||||||||||||||||| ||||||| ||||||| |  | |||||| || | ||||||||||| || ||||||||||  ||||   |||||||| ||    
T  8825511 ttggtcctatttataagaaaatgtcacaa-ttttaaggtgtagttattgcttaaaagacttttctatccttcatttaatgacttta---ttttaatatta 8825416  T
Q  436 gtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
     || || |||||||| || |||||  |||||| |||||||||||||||||| ||| ||||    
T  8825415 atgagtgtatttaatgctacacaattttttataagggtatatttataaaaatatttaaaa 8825356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 337 - 474
Target Start/End: Original strand, 38854607 - 38854744
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgttt-atctttttaataata 435  Q
    |||||| |||||||||||||||| |||||||||||||  || ||||||| || || |||||||||| |||||| |||||| |||  | |||||||||  |    
T  38854607 tttggttctatttataagaaaaattcacaacttttaaagtatatttatttttaga-agacttttctcaccctcgtttaatttttgttttttttaatatca 38854705  T
Q  436 gtgtgtatatttaatacttcacaaaattttatgagggta 474  Q
     || ||| ||| ||||||||||||| |||||||| ||||    
T  38854706 atgagtaaattcaatacttcacaaatttttatgaaggta 38854744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 459
Target Start/End: Complemental strand, 25295198 - 25295085
Alignment:
Q  346 atttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatat 445  Q
    ||||||||||||| || |||||||||||| |  | ||||||||| | |||||||| || ||||||||||||| || ||||||||||| ||||| || |||    
T  25295198 atttataagaaaatgttacaacttttaaggtgtaattattgtttaaaagacttttttatccctcatttaatgcttctctttttaatattagtgggtttat 25295099  T
Q  446 ttaatacttcacaa 459  Q
    | |||  |||||||    
T  25295098 taaatgtttcacaa 25295085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 486
Target Start/End: Complemental strand, 46918617 - 46918469
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||||||||||||||||||| ||||||| |||||||  | | |||||| || | |||||||| || || ||||||||||| | ||||||||||| ||     
T  46918617 tttggtcctatttataagaaaatgtcacaatttttaag-gatagttattgcttaaaagacttttttatccttcatttaatgtctgtctttttaatattaa 46918519  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 486  Q
    ||  | ||||||||  |||| || ||| ||| ||||||||||| ||||||    
T  46918518 tgaatgtatttaatgtttcaaaatattctataagggtatatttgtaaaaa 46918469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 338 - 495
Target Start/End: Original strand, 35455302 - 35455455
Alignment:
Q  338 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 437  Q
    |||||| |||||||||||||| ||||||||||||||| |  | |||||| || |  |||||||||| |||| |||||||||||||  ||| |||| ||||    
T  35455302 ttggtcttatttataagaaaatgtcacaacttttaaggtgtaattattgcttaaatgacttttctatccct-atttaatgtttat-atttaaatattagt 35455399  T
Q  438 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    | || ||||||||  |||||||  ||||||||  |||||||| || ||| ||||||||    
T  35455400 gagtgtatttaatgtttcacaattttttatga--gtatatttgtagaaatattcaaaa 35455455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 370 - 479
Target Start/End: Original strand, 49787770 - 49787879
Alignment:
Q  370 ttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatga 469  Q
    |||||||| ||||||||||| | | |||||| |||||||| |||||||||| || |||||| | || || |||||||||||| || ||||| ||  ||||    
T  49787770 ttaagatatatttattgtttaaaatacttttataaccctcgtttaatgtttgtccttttaaaattaatgagtatatttaatattttacaaatttcaatga 49787869  T
Q  470 gggtatattt 479  Q
    |||| |||||    
T  49787870 gggtgtattt 49787879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 429
Target Start/End: Complemental strand, 43320286 - 43320194
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatcttttta 429  Q
    ||||| |||||||||||||||| ||||||||||||||| |    ||||||||| | ||||||||||| |||  ||| ||||||| ||||||||    
T  43320286 tttggacctatttataagaaaatgtcacaacttttaaggtgtggttattgtttaaaagacttttctagcccctattcaatgtttgtcttttta 43320194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 495
Target Start/End: Complemental strand, 42279287 - 42279233
Alignment:
Q  441 tatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    ||||||||||| |||| ||| |||||||||||||||||| |||||| ||| ||||    
T  42279287 tatatttaatatttcataaatttttatgagggtatatttgtaaaaatattaaaaa 42279233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 2567789 - 2567821
Alignment:
Q  189 ttatacatcgtaaattgtgttaatttatttttt 221  Q
    |||| ||||||||||||||||||||||||||||    
T  2567789 ttatgcatcgtaaattgtgttaatttatttttt 2567821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 5e-45; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 355 - 526
Target Start/End: Original strand, 9425503 - 9425675
Alignment:
Q  355 aaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatactt 454  Q
    ||||| ||||||||||| || || ||||||||||| | |||||||| ||| ||||||||||||||||||||||| |||||||||  ||||||||||||||    
T  9425503 aaaaaatcacaacttttgaggtatatttattgtttaaaagacttttttaatcctcatttaatgtttatctttttcataatagtgaatatatttaatactt 9425602  T
Q  455 cacaaaattttatgagggtatatttataaaaacattc-aaaacattgcaacaacttatcattgtcttggtttt 526  Q
    |||| ||||||||||| |||||||| ||||||||||| |||| |||||||||||| || ||| ||||||||||    
T  9425603 cacagaattttatgagagtatatttgtaaaaacattcaaaaaaattgcaacaactaatgattttcttggtttt 9425675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 352 - 495
Target Start/End: Original strand, 6657887 - 6658029
Alignment:
Q  352 aagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaata 451  Q
    ||||||||||||||||||| ||| |||||||||||||| |  ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  6657887 aagaaaaagtcacaacttt-aaggtacatttattgtttaaatgacttttctaaccctcatttaatgtttgtctttttaatattagtgggtatatttaata 6657985  T
Q  452 cttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    ||||||||| |||||||||||||||||| |||| ||||| ||||    
T  6657986 cttcacaaatttttatgagggtatatttgtaaatacattaaaaa 6658029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 337 - 526
Target Start/End: Original strand, 19780224 - 19780413
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    ||||||||||| |||||||||||||  |||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |||||| || | |||    
T  19780224 tttggtcctatatataagaaaaagtttcaacttttaagatatatttattgtttaaaagacttttctaaccctcatttaatgtttctcttttcaaaattag 19780323  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggtttt 526  Q
    || ||||||||||||||||||||| || ||    ||||||||| |||||||||| |||| ||| ||| |||| || ||| ||||||||||    
T  19780324 tgggtatatttaatacttcacaaatttataatgcggtatatttgtaaaaacattaaaaaaattacaataactaatgattatcttggtttt 19780413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 495
Target Start/End: Original strand, 180334 - 180491
Alignment:
Q  338 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 437  Q
    |||||||||||||||||||||  |||||| |||||||||  | |||||| || | |||||||| || |||| ||||||||||| ||||||||||| ||||    
T  180334 ttggtcctatttataagaaaatatcacaatttttaagatgtagttattgcttaaaagacttttataccccttatttaatgtttgtctttttaatattagt 180433  T
Q  438 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
       | |||||||  ||||| ||  |||||| ||||||||||| |||| | ||||||||    
T  180434 cgatgtatttaacgcttcaaaattttttataagggtatatttgtaaacatattcaaaa 180491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 382 - 495
Target Start/End: Complemental strand, 34837260 - 34837147
Alignment:
Q  382 tattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttat 481  Q
    |||||||| | |||||||| || |||| |||||||| || ||||||||||| || ||  | |||| ||| ||||||||  |||||||||||||||||| |    
T  34837260 tattgtttaaaagacttttttaccccttatttaatgcttgtctttttaatattaatggatgtattgaatgcttcacaattttttatgagggtatatttgt 34837161  T
Q  482 aaaaacattcaaaa 495  Q
    ||||| ||||||||    
T  34837160 aaaaatattcaaaa 34837147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 486
Target Start/End: Complemental strand, 606772 - 606623
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||||||||||||||||||| ||||||||||||||| |  | |||| | || | | ||||||  | |||| ||||||||  | | ||||||||| |||    
T  606772 tttggtcctatttataagaaaatgtcacaacttttaaggtgtacttatagcttaaaatactttttaatcccttatttaatgactgtatttttaatattag 606673  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 486  Q
    ||  | ||||||||  ||||||| ||| ||| ||||||||||| ||||||    
T  606672 tggatgtatttaatgtttcacaacattctataagggtatatttgtaaaaa 606623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 345 - 432
Target Start/End: Original strand, 1856752 - 1856839
Alignment:
Q  345 tatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaata 432  Q
    ||||||||| ||||  ||||||||||||||   || ||||||||| | ||||||||||| | |||||||||| ||| |||||||||||    
T  1856752 tatttataaaaaaatatcacaacttttaagtatcagttattgtttaaaagacttttctatctctcatttaatatttctctttttaata 1856839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 495
Target Start/End: Complemental strand, 12143771 - 12143716
Alignment:
Q  440 gtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    ||||||||||| ||||||||  |||||||||||| ||||| |||||| ||||||||    
T  12143771 gtatatttaatgcttcacaattttttatgagggtgtatttgtaaaaatattcaaaa 12143716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 30627822 - 30627854
Alignment:
Q  290 tactcactccggtctcatttataagaaaaattt 322  Q
    ||||||||||||||| |||||||||||||||||    
T  30627822 tactcactccggtcttatttataagaaaaattt 30627854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 337 - 523
Target Start/End: Complemental strand, 38987 - 38802
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    ||||||| |||||||||||||||||||||| |||||||||| ||||||||||| | | | ||||||| |||| ||| |||| |  | || | |||| |||    
T  38987 tttggtcttatttataagaaaaagtcacaatttttaagatatatttattgtttaaaatatttttctagcccttattgaatg-tcgttttatcaatattag 38889  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaacattgcaacaacttatcattgtcttggt 523  Q
    ||  ||| ||||||| ||| |||| ||||||||| |||||||| ||||||||||||||| ||||||| |||| || ||||| |||||    
T  38888 tggatatgtttaatagttcccaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaagaactaatgattgttttggt 38802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 352 - 495
Target Start/End: Original strand, 131735 - 131881
Alignment:
Q  352 aagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaat- 450  Q
    ||||||||||||||||||| ||| | |||||||||||  | |||||||||||||| ||| | || |||| ||||||||||| |||||  ||||||||||     
T  131735 aagaaaaagtcacaacttt-aaggtgcatttattgttcaaaagacttttctaaccttcaataaaagtttgtctttttaatattagtggttatatttaata 131833  T
Q  451 --acttcacaaaattttatgagggtatatttat-aaaaacattcaaaa 495  Q
      |||||||||| |||||||||||||||||| | ||||||||||||||    
T  131834 atacttcacaaatttttatgagggtatatttgtaaaaaacattcaaaa 131881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 337 - 486
Target Start/End: Original strand, 3015 - 3164
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||||||||||||||||||| ||||||||||||||| |  | ||||||||| | ||||||||||| |||||||| |||  || ||||||||||| |||    
T  3015 tttggtcctatttataagaaaatgtcacaacttttaaggtgtagttattgtttaaaagacttttctatccctcattcaataattctctttttaatattag 3114  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 486  Q
    ||  | ||||||||  ||||||| ||| ||| |||| || ||| ||||||    
T  3115 tggatgtatttaatgtttcacaacattctataagggcatgtttgtaaaaa 3164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 338 - 486
Target Start/End: Complemental strand, 651 - 503
Alignment:
Q  338 ttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagt 437  Q
    ||||||||| |||||||||||||||||||| |||||| |  | ||||||||| | |||||||| || ||||||||||||| || || |||||||| ||||    
T  651 ttggtcctaattataagaaaaagtcacaacatttaaggtgtagttattgtttaaaagacttttttatccctcatttaatgattgtcgttttaatattagt 552  T
Q  438 gtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 486  Q
    |  |  |||||||  ||||||| ||| ||| ||||||||||| ||||||    
T  551 ggatccatttaatgtttcacaacattctataagggtatatttgtaaaaa 503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 337 - 495
Target Start/End: Original strand, 51266 - 51424
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||| ||||||||||| ||| ||||||||||||||| |  |||||||| || | ||| |||| || ||||||||||||  || ||||||||||  |||    
T  51266 tttggttctatttataagtaaatgtcacaacttttaaggtgtatttattgcttaaaagatttttttatccctcatttaataattctctttttaattttag 51365  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    |  || ||||||||  |||||||  ||||||||||||||| || |||||| ||||||||    
T  51366 ttggtgtatttaatgtttcacaactttttatgagggtataattgtaaaaatattcaaaa 51424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 399 - 495
Target Start/End: Complemental strand, 11691152 - 11691056
Alignment:
Q  399 ttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    ||||| |||||||||||||||| ||||||||||  ||||| || ||||||||| |||| || ||||||||||| | ||||| |||||| ||||||||    
T  11691152 ttctatccctcatttaatgtttctctttttaatcttagtgagtgtatttaatatttcataatattttatgaggatgtatttgtaaaaatattcaaaa 11691056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 486
Target Start/End: Original strand, 27193009 - 27193153
Alignment:
Q  342 tcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgt 441  Q
    ||||||||||||| ||| |||||||||||||||||| | ||||||||| | |||||||| || || ||||||||||  | |||||||||||  | || ||    
T  27193009 tcctatttataaggaaatgtcacaacttttaagatatagttattgtttaaaagacttttttatccttcatttaatgcatctctttttaatataactgagt 27193108  T
Q  442 atatttaatacttcacaaaattttatgagggtatatttataaaaa 486  Q
    || ||||||  |||| ||  |||||||| | ||||||| ||||||    
T  27193109 atttttaatgtttcataattttttatgatgatatatttgtaaaaa 27193153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 344 - 490
Target Start/End: Original strand, 17693562 - 17693705
Alignment:
Q  344 ctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttt-tctaaccctcatttaatgtttatctttttaataatagtgtgta 442  Q
    ||||||||||||||| ||||||| |||||||||  |||||||   | | ||||||| | ||  ||||||| |||||||||| |||||||| |||||  ||    
T  17693562 ctatttataagaaaatgtcacaatttttaagatgtatttattacataaaagactttctttagtcctcattcaatgtttatcattttaatactagtggata 17693661  T
Q  443 tatttaatacttcacaaaattttatgagggtatatttataaaaacatt 490  Q
    ||||    |||||| ||||||||| |||||||||||| ||||||||||    
T  17693662 tatt----acttcataaaattttacgagggtatatttgtaaaaacatt 17693705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 1963010 - 1962962
Alignment:
Q  341 gtcctatttataagaaaaagtcacaacttttaagatacatttattgttt 389  Q
    ||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  1963010 gtcctatttataagaaaaagtgacaacttttaaaatatatttattgttt 1962962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 347 - 450
Target Start/End: Complemental strand, 3257354 - 3257251
Alignment:
Q  347 tttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatt 446  Q
    ||||||||||||  ||||||||||||||    |  |||||||| | ||||||||||| | || ||||||||||| ||||||||||| |||||  ||||||    
T  3257354 tttataagaaaatatcacaacttttaaggcgtaactattgtttaaaagacttttctatctcttatttaatgtttgtctttttaatattagtggatatatt 3257255  T
Q  447 taat 450  Q
    ||||    
T  3257254 taat 3257251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 339 - 479
Target Start/End: Original strand, 6688782 - 6688924
Alignment:
Q  339 tggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatcttttta--ataatag 436  Q
    ||||||||  ||||||||||  |||||||||||||| |  | ||||||||| | ||||||||||| |||| ||||||| | | | ||||||  ||| |||    
T  6688782 tggtcctaaatataagaaaatatcacaacttttaaggtgtagttattgtttaaaagacttttctatcccttatttaatatgtttgtttttaatatattag 6688881  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatattt 479  Q
    |  || |||||||| ||| ||||  ||||||||||||||||||    
T  6688882 taagtgtatttaatgctttacaattttttatgagggtatattt 6688924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 495
Target Start/End: Original strand, 18704992 - 18705150
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||||| | |||||||||||  ||| |||||||||| |  | |||||  || | |||||||| || || | ||||||||||| | ||||||||| ||     
T  18704992 tttggtccaaattataagaaaacatcataacttttaaggtgtagttattacttaaaagacttttttaccctttatttaatgtttttgtttttaatattaa 18705091  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaa 495  Q
    |  || |||||||| ||||||||  |||||| ||| ||||||| |||||| ||||||||    
T  18705092 taggtgtatttaatgcttcacaactttttataaggatatatttgtaaaaatattcaaaa 18705150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 341 - 486
Target Start/End: Complemental strand, 3629360 - 3629215
Alignment:
Q  341 gtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtg 440  Q
    |||| ||||||||||||| ||||||||||||||| |  | |||||  || | |||||||| || |||| ||||||||  | | ||||||||| |||||      
T  3629360 gtccaatttataagaaaatgtcacaacttttaaggtgtagttattacttaaaagacttttgtatccctaatttaatgactgtatttttaatattagtgaa 3629261  T
Q  441 tatatttaatacttcacaaaattttatgagggtatatttataaaaa 486  Q
    | ||||||||  ||||||| ||| ||| ||| ||||||| ||||||    
T  3629260 tgtatttaatgtttcacaacattctataaggttatatttgtaaaaa 3629215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 496
Target Start/End: Original strand, 17686233 - 17686384
Alignment:
Q  345 tatttataagaaaaa-gtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtat 443  Q
    ||||||||||||||| |||| |||||||||| |  ||||| | | | | ||||||||  || |||| ||||||||| |||||||||||| |||||   |     
T  17686233 tatttataagaaaaaagtcataacttttaaggtgtatttactatataaaagactttttcaatcctcctttaatgtt-atctttttaatactagtggaaac 17686331  T
Q  444 atttaatacttcacaaaattttatgagggtatatttataaaaacattcaaaac 496  Q
    ||||||||||||| |   |||||||| |||||| || |||||||||| |||||    
T  17686332 atttaatacttcatatgtttttatgaaggtatacttgtaaaaacatttaaaac 17686384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 486
Target Start/End: Original strand, 2225619 - 2225722
Alignment:
Q  383 attgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttata 482  Q
    ||||||| | ||||||||||| |  | ||||||||||| | ||||||||| |||||  | ||||||||  |||||||  |||||||| ||||||||| ||    
T  2225619 attgtttaaaagacttttctaccatttatttaatgtttttgtttttaatattagtggttgtatttaatgtttcacaactttttatgaaggtatatttgta 2225718  T
Q  483 aaaa 486  Q
    ||||    
T  2225719 aaaa 2225722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 459
Target Start/End: Complemental strand, 11983709 - 11983614
Alignment:
Q  364 caacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatagtgtgtatatttaatacttcacaa 459  Q
    ||||||||||| |  | ||||||||| | ||| |||| || |||||||||||||||| ||||||||||| |||||  | ||||||||  |||||||    
T  11983709 caacttttaaggtgtaattattgtttaaaagatttttttacccctcatttaatgtttctctttttaatattagtggatgtatttaatgtttcacaa 11983614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 372
Target Start/End: Original strand, 23010685 - 23010720
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaactttta 372  Q
    |||||||||||||||||||||||||||||| |||||    
T  23010685 tttggtcctatttataagaaaaagtcacaaatttta 23010720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 486
Target Start/End: Original strand, 14917792 - 14917865
Alignment:
Q  410 atttaatgtttatctttttaataatagtgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaa 486  Q
    |||||||||||| | ||||||||||   |||| |||||||| ||||||||  ||||| |||||||||||| ||||||    
T  14917792 atttaatgtttagccttttaataat---gtgtgtatttaattcttcacaattttttacgagggtatatttgtaaaaa 14917865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 337 - 493
Target Start/End: Original strand, 154333 - 154489
Alignment:
Q  337 tttggtcctatttataagaaaaagtcacaacttttaagatacatttattgtttgacagacttttctaaccctcatttaatgtttatctttttaataatag 436  Q
    |||||| |||||||||||||||  | |||||||||||| |  | ||||||||| | |||| ||| || |  | ||||||||||| ||||||||||| | |    
T  154333 tttggttctatttataagaaaatattacaacttttaaggtgtagttattgtttaaaagacctttttaccttttatttaatgtttgtctttttaatattgg 154432  T
Q  437 tgtgtatatttaatacttcacaaaattttatgagggtatatttataaaaacattcaa 493  Q
    || || |||||||| |||||||   ||||||||||| || ||| |||||| ||||||    
T  154433 tgggtgtatttaatgcttcacagttttttatgagggcatgtttgtaaaaatattcaa 154489  T

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