View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13741_low_22 (Length: 261)
Name: NF13741_low_22
Description: NF13741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13741_low_22 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 2 - 261
Target Start/End: Original strand, 47286503 - 47286762
Alignment:
| Q |
2 |
gtcgttgttttaggaatgaattcatagttgaattgtcttctaccaccaataattataatgcgattatctggtagtatttgatttgttgcataccatcttc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286503 |
gtcgttgttttaggaatgaattcatagttgaattgtcttctaccaccaataattataatgcgattatctggtagtatttgatttgttgcataccatcttc |
47286602 |
T |
|
| Q |
102 |
tttcggataagtaacttgggaattcaatccaatcacaattttcgttgaaacatggtgtgaacattcgaattcgacgctcaccatcgttgaaaccaccggt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286603 |
tttcggataagtaacttgggaattcaatccaatcacaattttcgttgaaacatggtgtgaacattcgaattcgacgctcaccatcgttgaaaccaccggt |
47286702 |
T |
|
| Q |
202 |
ttggactaatgtaccgtttgagagaacagaacctgaggaacaccaagtgtctgtttgtac |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47286703 |
ttggactaatgtaccgtttgagagaacagaacctgaggaacaccaagtgtctgtttgtac |
47286762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University