View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13741_low_24 (Length: 255)
Name: NF13741_low_24
Description: NF13741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13741_low_24 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 36357837 - 36358076
Alignment:
| Q |
16 |
aatatgaaacttgtcaacataaatatattcaaagtatgagaaaatattactgattatgtcaactgaagtacggccattggtaaatcttccggtaggacca |
115 |
Q |
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| T |
36357837 |
aatataaaacttgtcaacataaatatattcaaagtgtgagaaaatattactgattatgtcaattgaagtacggccattggtaaatcttccggtaggacca |
36357936 |
T |
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| Q |
116 |
gctggaaaatcaatcccataaggcctgtaattaactttggcatcggtagctaggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaa |
215 |
Q |
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| T |
36357937 |
gctggaaaatcaatcccataaggcctgtaattaactttggcatcggtagctaggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaa |
36358036 |
T |
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| Q |
216 |
gacatggtacttgggacttcccaacaacacaatatgttgc |
255 |
Q |
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| T |
36358037 |
gacatggtacttggggcttcccaacaacacaatatgttgc |
36358076 |
T |
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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 207
Target Start/End: Original strand, 5573428 - 5573573
Alignment:
| Q |
62 |
ttactgattatgtcaactgaagtacggccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcgg |
161 |
Q |
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| T |
5573428 |
ttacttattatgtcaattgcagttctaccgttggtaaatcttccggttggacccatcggaaagtcaattccataaggtttgtaattagattttgcagagg |
5573527 |
T |
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| Q |
162 |
tagctaggttattgttgtttccactgtctgataaagaatctccaaa |
207 |
Q |
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| T |
5573528 |
taggaaggttattgttgtttccactatcagataaagaatctccaaa |
5573573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 5576591 - 5576759
Alignment:
| Q |
63 |
tactgattatgtcaactgaagtacggccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcggt |
162 |
Q |
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| T |
5576591 |
tacttattatgtcaattgaagttcgaccgttggtaaatcttccggttgggcccatcgggaagtcaattccataaggtttgtaattagattttgcagaggt |
5576690 |
T |
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| Q |
163 |
agctaggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtacttggga |
231 |
Q |
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| T |
5576691 |
gggaaggttgttattgtttccactatcagataaagaatctccaaagataaaaagacatggcacttggga |
5576759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 238
Target Start/End: Original strand, 5586959 - 5587135
Alignment:
| Q |
62 |
ttactgattatgtcaactgaagtacggccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcgg |
161 |
Q |
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| T |
5586959 |
ttactgattatgtcaattgaagttcgaccgttggtaaatcttccagttgggcccatcggaaagtcgattccatagggattgtaattagattttgcagagg |
5587058 |
T |
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| Q |
162 |
tagctaggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtacttgggacttccca |
238 |
Q |
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| T |
5587059 |
taggaaggttattgttgtttccactatcagataaagagtctccaaagataaatagacaaggcacttgggatttccca |
5587135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 5593300 - 5593371
Alignment:
| Q |
167 |
aggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtacttgggacttccca |
238 |
Q |
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| T |
5593300 |
aggttgttgttgtttccaccatcagataaagaatctccaaagataaaaagacaaggaacttgggatttccca |
5593371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 228
Target Start/End: Original strand, 7017571 - 7017710
Alignment:
| Q |
89 |
ccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcggtagctaggttattgttgtttccactgt |
188 |
Q |
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| T |
7017571 |
ccattagtaaaccttcctgttggacctgtcggaaaatcgatgccatatggtttgtaattaacttttgcagttgtaacaagatcattgttgtttccactgt |
7017670 |
T |
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| Q |
189 |
ctgataaagaatctccaaaaatgaaaagacatggtacttg |
228 |
Q |
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| T |
7017671 |
cagataaagagtcaccaaaaacaaaaagacaaggcacttg |
7017710 |
T |
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