View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13741_low_29 (Length: 212)
Name: NF13741_low_29
Description: NF13741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13741_low_29 |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 18026497 - 18026305
Alignment:
| Q |
1 |
agctagaggaaatatttgtatgtgaagttgatcaggaagtcaatattccaaatctgagatatgtagcatttctcaacctaccaagcctcagccagaccca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18026497 |
agctagaggaaatatttgtatgtgaagttgatcaggaagtcaatattccaaatctgagatatgtagcatttctcaacctaccaagcctcagccagaccca |
18026398 |
T |
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| Q |
101 |
aagaattcattttcaggcagtacaaaatcgttctatactacgttgtcaagaactctctctgacatcagcaatgagagaatatgacgtacttgg |
193 |
Q |
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| T |
18026397 |
aagaattcattttcaggcagtacaaaatcgttctatactacgttgtcaagaactctctctgacatcagcaatgagagaatatgacgtacttgg |
18026305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 27392263 - 27392092
Alignment:
| Q |
1 |
agctagaggaaatatttgtatgtgaagttgatcaggaagtcaatattccaaatctgagatatgtagcatttctcaacctaccaagcctcagccagaccca |
100 |
Q |
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|||||||||||||||||||||| ||||||||| || ||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||| |
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| T |
27392263 |
agctagaggaaatatttgtatgcgaagttgatgagaaagtcaatattccaaatctgaaatttgtagcatttgtcaacctaccaagcctcagccagaccca |
27392164 |
T |
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| Q |
101 |
aagaattcattttcaggcagtacaaaatcgttctatactacgttgtcaagaactctctctgacatcagcaat |
172 |
Q |
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| T |
27392163 |
aggaattcattttcaagcagcaccatatcgttttatacaaagttgtcgagaactctctctgacttcagcaat |
27392092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 12146248 - 12146413
Alignment:
| Q |
1 |
agctagaggaaatatttgtatgtgaagt---tgatcaggaagtcaatattccaaatctgagatatgtagcatttctcaacctaccaagcctcagccagac |
97 |
Q |
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||||||||||||||||||||||||||| |||| || |||||||||||||||| ||| || |||||||||| ||||||||||||| ||| ||||||| |
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| T |
12146248 |
agctagaggaaatatttgtatgtgaagaaggtgatgagaaagtcaatattccaaaactggaatttgtagcatttgtcaacctaccaagtctctgccagac |
12146347 |
T |
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| Q |
98 |
ccaaagaattcattttcaggcagtacaaaatcgttctatactacgttgtcaagaactctctctgac |
163 |
Q |
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||| |||||||||||||||| |||||||||||| ||| | | ||||||||||||||||||||| |
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| T |
12146348 |
tcaaggaattcattttcaggctgtacaaaatcgtattatccaaaattgtcaagaactctctctgac |
12146413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 27347643 - 27347800
Alignment:
| Q |
6 |
gaggaaatatttgtatgtgaagttgatcaggaagtcaatattccaaatctgagatatgtagcatttctcaacctaccaagcctcagccagacccaaagaa |
105 |
Q |
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|||||||||||||||||| ||| |||| || |||||||||||||||| |||| || || ||||||| ||||||| ||||||||| |||||||||| ||| |
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| T |
27347643 |
gaggaaatatttgtatgtaaaggtgatgagaaagtcaatattccaaaactgaaatttgcagcatttgtcaaccttccaagcctctaccagacccaaggaa |
27347742 |
T |
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| Q |
106 |
ttcattttcaggcagtacaaaatcgttctatactacgttgtcaagaactctctctgac |
163 |
Q |
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| T |
27347743 |
ttcattttcaggctgtacaaaatcgtattgtccaaaattgtcaagaactctctctgac |
27347800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 27376431 - 27376564
Alignment:
| Q |
1 |
agctagaggaaatatttgtatgtgaagt---tgatcaggaagtcaatattccaaatctgagatatgtagcatttctcaacctaccaagcctcagccagac |
97 |
Q |
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||||||||||||||||||||||||||| |||| || |||||||||| |||||||| | | |||||||||| ||||||||||||| ||| ||||||| |
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| T |
27376431 |
agctagaggaaatatttgtatgtgaagaaggtgatgagaaagtcaatatgccaaatctaaaacttgtagcatttgtcaacctaccaagtctctgccagac |
27376530 |
T |
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| Q |
98 |
ccaaagaattcattttcaggcagtacaaaatcgt |
131 |
Q |
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||| |||||||||||||||| |||||||||||| |
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| T |
27376531 |
tcaaggaattcattttcaggctgtacaaaatcgt |
27376564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 17746200 - 17746113
Alignment:
| Q |
1 |
agctagaggaaatatttgtatgtgaagttgatcaggaagtcaatattccaaatctgagatatgtagcatttctcaacctaccaagcct |
88 |
Q |
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|||||||||||||||||| | |||||| |||| || ||||||||||||| || |||| | ||| |||||| |||||||||||||||| |
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| T |
17746200 |
agctagaggaaatatttggaagtgaaggtgatgagaaagtcaatattccgaaactgaaagttgtggcatttgtcaacctaccaagcct |
17746113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 19047520 - 19047433
Alignment:
| Q |
1 |
agctagaggaaatatttgtatgtgaagttgatcaggaagtcaatattccaaatctgagatatgtagcatttctcaacctaccaagcct |
88 |
Q |
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|||||||||||||||||| | |||||| |||| || ||||||||||||| || |||| | ||| |||||| |||||||||||||||| |
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| T |
19047520 |
agctagaggaaatatttggaagtgaaggtgatgagaaagtcaatattccgaaactgaaagttgtggcatttgtcaacctaccaagcct |
19047433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 26142257 - 26142185
Alignment:
| Q |
45 |
attccaaatctgagatatgtagcatttctcaacctaccaagcctcagccagacccaaagaattcattttcagg |
117 |
Q |
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||||||||||||||| |||||||||| ||||||||||||| ||| |||| |||| ||||||||||||||| |
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| T |
26142257 |
attccaaatctgagagttgtagcatttgtcaacctaccaaggctctgccatgcccagggaattcattttcagg |
26142185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 54754 - 54589
Alignment:
| Q |
1 |
agctagaggaaatatttgtatgtgaagt---tgatcaggaagtcaatattccaaatctgagatatgtagcatttctcaacctaccaagcctcagccagac |
97 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| | |||||||||| |||||| ||||||||| |||||| |
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| T |
54754 |
agctagaggaaatatttgtatgtgaagaaggtgatcagaaagtcaatcttccaaatctgaaagttgtagcatttaccaaccttccaagcctctaccagac |
54655 |
T |
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| Q |
98 |
ccaaagaattcattttcaggcagtacaaaatcgttctatactacgttgtcaagaactctctctgac |
163 |
Q |
| |
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|||| |||||||||||||||| ||||||||||||| | | | | ||||||||||||||||||||| |
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| T |
54654 |
ccaaggaattcattttcaggctgtacaaaatcgttttgtccaaaattgtcaagaactctctctgac |
54589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 22391353 - 22391483
Alignment:
| Q |
1 |
agctagaggaaatatttgtatgtgaagt---tgatcaggaagtcaatattccaaatctgagatatgtagcatttctcaacctaccaagcctcagccagac |
97 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||||||| |||||||| | | |||| ||||| ||||||||||||||||| ||||| |
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| T |
22391353 |
agctagaggaaatatttgtatgtgaagaaggtgatcagaaagtcaatatgccaaatctaaaagttgtatcatttgtcaacctaccaagcctctatcagac |
22391452 |
T |
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| Q |
98 |
ccaaagaattcattttcaggcagtacaaaat |
128 |
Q |
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|||| ||||||||||||||| ||||||||| |
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| T |
22391453 |
ccaagaaattcattttcaggctgtacaaaat |
22391483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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