View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13741_low_3 (Length: 584)
Name: NF13741_low_3
Description: NF13741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13741_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 266 - 569
Target Start/End: Complemental strand, 3452738 - 3452435
Alignment:
| Q |
266 |
tagtatggtccccagagagagcaacaaactcatacatcgacacagttcaagccataaccaccatcaatcacctttctagcgaatccggtgcggcggagct |
365 |
Q |
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| T |
3452738 |
tagtatggtccccagagagagcaacaaactcatacatcgacacagttcaagcgataaccaccatcaatcacctttctagcgaatccggtgcggcggagct |
3452639 |
T |
|
| Q |
366 |
ggtatcctctatggcagcaggatggaacgctcagctgatagtagaaacatggtcacacggcggagttatcccaacgagtgttggtttatccatagcaagc |
465 |
Q |
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| T |
3452638 |
ggtatcctctatggcagcaggatggaacgctcagctgatagtagaaacatggtcacacggcggagttatcccaacgagtgttggtttatccatagcaagc |
3452539 |
T |
|
| Q |
466 |
ggtcacacaggtggaagacacgtgtgcatagttcctgatgaacggtcaagatcagagtattcaaaaaacatgggagaagctggtatgtcgccggagatta |
565 |
Q |
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| T |
3452538 |
ggtcacacaggtggaagacacgtgtgcatagttcctgatgaacaatcaagatcagagtatgcaaaaaacatgggagaagctggtatgtcgccggagatta |
3452439 |
T |
|
| Q |
566 |
tagt |
569 |
Q |
| |
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|||| |
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| T |
3452438 |
tagt |
3452435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 271 - 561
Target Start/End: Complemental strand, 3462752 - 3462465
Alignment:
| Q |
271 |
tggtccccagagagagcaacaaactcatacatcgacacagttcaagccataaccaccatcaatcacctttctagcgaatccggtgcggcggagctggtat |
370 |
Q |
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| T |
3462752 |
tggtccccagagagagcaactaactcatacatagacacagttcaagccgtaaccacca---atcaccttgtcagtgaatctggtgtggcggagtttgttt |
3462656 |
T |
|
| Q |
371 |
cctctatggcagcaggatggaacgctcagctgatagtagaaacatggtcacacggcggagttatcccaacgagtgttggtttatccatagcaagcggtca |
470 |
Q |
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| T |
3462655 |
cagctatggcggcaggatggaacgctcagcttatagtggaaacatggtcatgtggcggagttattccaacgagtgttggtttatccatagcaagcggtca |
3462556 |
T |
|
| Q |
471 |
cacaggtggaagacacgtgtgcatagttcctgatgaacggtcaagatcagagtattcaaaaaacatgggagaagctggtatgtcgccggag |
561 |
Q |
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| T |
3462555 |
caatggtggaagacacgtgtgtatagttcctgatgaactctcaagatcagagtatgcaaaaaatatgttagaagctggtatgtcaccggag |
3462465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 3452969 - 3452844
Alignment:
| Q |
35 |
atgtgagaagaacagtgcaacttgctatcgtaatccaatacgttacgaaacatagcccaaagacgaaaagtcaaatgttttgtcccttaacacccataaa |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3452969 |
atgtgagaagaacagtgcaacttgctatcgtaatccaatacgttacgaaacatagcccaaagacgaaaagtcaaatgttttgtcccttaacacccataaa |
3452870 |
T |
|
| Q |
135 |
tataaccctctacacccatttcttcc |
160 |
Q |
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|||||||| ||||||||||||||||| |
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| T |
3452869 |
tataacccactacacccatttcttcc |
3452844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 3453017 - 3452983
Alignment:
| Q |
1 |
agaaagggactattttaaaactaacacagtgatta |
35 |
Q |
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||||||||||||||||||||||||||| ||||||| |
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| T |
3453017 |
agaaagggactattttaaaactaacacggtgatta |
3452983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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