View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13741_low_5 (Length: 481)
Name: NF13741_low_5
Description: NF13741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13741_low_5 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Original strand, 23852957 - 23853420
Alignment:
| Q |
18 |
atacctttccatttacaacagtcatttcctttccaagaggaaagtctaaataatggatcattaaagcttcctttgatttcaagaagagctttcctctctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23852957 |
atacctttccatttacaacagtcatttcctttccaagaggaaagtctaaataatggatcattaaagcttcctttgatttcaagaagagctttcctctctt |
23853056 |
T |
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| Q |
118 |
gttccatgcaaccaaatgatgaatggccacaggaacatagtaacatgaaatatgtactcaaaagtgaaacaactgaaaaagcaaaactttggtttctatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853057 |
gttccatgcaaccaaatgatgaatggccacaggaacatagtaacatgaaatatgtactcaaaagtgaaacaactgaaaaagcaaaactttggtttctatc |
23853156 |
T |
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| Q |
218 |
catatttaagggaagagactgaagcagagctgcaagtcgggtgggcacaacacaaccgtgacacaaccaacacaacttaaataggcatctcattttatta |
317 |
Q |
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| T |
23853157 |
catatttaagggaagagactgaagcagagctgcaagtcgggtgggcacaacacaaccgtgacacaaccaacacaacttaaataggcatctcattttatta |
23853256 |
T |
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| Q |
318 |
tgtcctttcatttgttcatttttatatttggaacgagtcatgttgatgttctatttccgtgcatatcttgagcacttatttatatttggggacaccttat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853257 |
tgtcctttcatttgttcatttttatatttggaacgagtcatgttgatgttctatttccgtgcatatcttgagcacttatttatatttggggacaccttat |
23853356 |
T |
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| Q |
418 |
attcaaacacaattgagtctctatataattgaactctagttaattggtatctatgatgatgtcc |
481 |
Q |
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| T |
23853357 |
attcaaacacaattgagtctctatgtaattgaactctagttaattggtatctatgttgatgtcc |
23853420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 23752256 - 23752535
Alignment:
| Q |
18 |
atacctttccatttacaacagtcatttcctttccaagaggaaagtctaaataatggatcattaaagcttcctttgatttcaagaagagctttcctctctt |
117 |
Q |
| |
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|||||||||||||||||||| |||||||||| ||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||| |||| |||||||| |
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| T |
23752256 |
atacctttccatttacaacattcatttccttcccaagaggaaagtcttaatgatgtatcattaaagcttcctttgagttcaagaagtgcttgcctctctt |
23752355 |
T |
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| Q |
118 |
gttccatgcaaccaaatgatgaatggccacaggaacatagtaacatgaaatatgtactcaaaagtgaaacaactgaaaaagcaaaactttggtttctatc |
217 |
Q |
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|||| |||||||||||||||||||||| || |||||||||||||||||| |||| |||||||| |||||||| ||||||| ||||||||||||||| |
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| T |
23752356 |
gttctatgcaaccaaatgatgaatggctactagaacatagtaacatgaaacatgtgctcaaaagggaaacaacaacaaaagcataactttggtttctatg |
23752455 |
T |
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| Q |
218 |
catatttaagggaagagactgaagcagagctgcaagtcgggtgggcacaacacaaccgtgacacaaccaacacaacttaaatagg |
302 |
Q |
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||||||| ||||||| || ||||||| |||| |||| ||||||||||||| | ||| |||||||||||||||||||||| |
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| T |
23752456 |
catatttgagggaagtgaatgaagcaacgctgtaagttgggtgggcacaacg-----gggactcaaccaacacaacttaaatagg |
23752535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 22619649 - 22619863
Alignment:
| Q |
18 |
atacctttccatttacaacagtcatttcctttccaagaggaaagtctaaataatggatcattaaagcttcctttgatttcaagaagagctttcctctctt |
117 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||| ||| ||| |||||||||||||||||||| | | | |||||||| |||||||| |
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| T |
22619649 |
atacctttccatttacaacattcatttccttcccaagaggaaagtcttaatgatgtatcattaaagcttcctttgagtgctaaaagagcttgcctctctt |
22619748 |
T |
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| Q |
118 |
gttccatgcaaccaaatgatgaatggccacaggaacatagtaacatgaaatatgtactcaaaagtgaaacaactgaaaaagcaaaactttggtttctatc |
217 |
Q |
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|||| | |||||||||||||||||||| || |||||||||||||||||| |||| |||||||| |||||||| ||||||| ||||||||||||||| |
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| T |
22619749 |
gttctaagcaaccaaatgatgaatggctactagaacatagtaacatgaaacatgtgctcaaaagggaaacaacaacaaaagcataactttggtttctatg |
22619848 |
T |
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| Q |
218 |
catatttaagggaag |
232 |
Q |
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||||||| ||||||| |
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| T |
22619849 |
catatttgagggaag |
22619863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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