View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13742_low_1 (Length: 680)
Name: NF13742_low_1
Description: NF13742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13742_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 555; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 12 - 662
Target Start/End: Complemental strand, 54479585 - 54478936
Alignment:
| Q |
12 |
agggtctgggatgatcaagttgtttgcaagagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcaga |
111 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54479585 |
agggtctgggatgatcaagttgtttgca-gagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcaga |
54479487 |
T |
|
| Q |
112 |
aatacttcagctgtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54479486 |
aatacttcagctgtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcac |
54479387 |
T |
|
| Q |
212 |
actgttttgttgattacagtgcacacaattaggcaatgttggcttcatccaaatggttggcgccctgtcatgcatgtcgttcctgttttcggtaacaaac |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54479386 |
actgttttgttgattacagtgcacacaattaggcaatgttggcttcatccaaatggttggcgccctgtcatgcatgtcgttcctgttttcggtaacaaac |
54479287 |
T |
|
| Q |
312 |
ttcaatatttcaggaaccttttctctcaaatcaaaagacatttggaacttttctttgcatttcttgcactgaacagctccggtgatattaactattctat |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
54479286 |
ttcaatatttcaggaaccttttctctcaaatgaaaagacatttggaacttttctttgcatttcttgcacggaacagctccggtgatattaactattctat |
54479187 |
T |
|
| Q |
412 |
tttgcaagagatatttgtagctgtgaacggttgctctgcaatcagcggccatacaaaaggggcagggatgactacactttttccatctcgagttacttca |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54479186 |
tttgcaagagatatttgtagctgtgaacggttgctctgcaatcagcggccatacaaaaggggcagggatgactacactttttccatctcgagttacttca |
54479087 |
T |
|
| Q |
512 |
aagccattcatgatttctctgaagggatccatcgatgtgttgaaagaataagagggagtgagttaatnnnnnnnnnnnnnnnnnnnnnnnntgttctgat |
611 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54479086 |
aagccattcatgatatctctgaagggatccatcgatgtgttgaaagaataagagggagtgagttaatagagagaaaagaaaaagaaaagaatgttctgat |
54478987 |
T |
|
| Q |
612 |
gtgagtgtgagtgagcaatgtgaggaaatttaatgggaaagagaatgaaaa |
662 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54478986 |
gcgagtgtgagtgagcaatgtgaggaaatttaatgggaaagagaatgaaaa |
54478936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 24 - 265
Target Start/End: Original strand, 25044311 - 25044551
Alignment:
| Q |
24 |
gatcaagttgtttgcaagagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagct |
123 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||||| | ||||| ||| | | ||||| |||||||||| | |
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| T |
25044311 |
gatcaagttgtttgcat-agttcaagataagttaaataaagaaccctatttttggcacctgttctatgatggttgttatacttgcaaaaatacttcaatt |
25044409 |
T |
|
| Q |
124 |
gtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgttttgttg |
223 |
Q |
| |
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||||| | |||| || || ||||||||||| || | |||||||| ||| |||||| || ||||| || ||||||| ||||||||||||||||| || |
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| T |
25044410 |
gtttaagattgcaacaacccagcatttgtcccaacagcagaaacaaccaattgatattcttcttcttctcggcaattatcggcttcacactgttttcttt |
25044509 |
T |
|
| Q |
224 |
attacagtgcacacaattaggcaatgttggcttcatccaaat |
265 |
Q |
| |
|
|| || |||||||| | |||||| |||| |||||| |||| |
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| T |
25044510 |
gttgcaatgcacacatcttggcaatcttggattcatcaaaat |
25044551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 287
Target Start/End: Original strand, 25040598 - 25040835
Alignment:
| Q |
50 |
ataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagctgtttacgcgtgcagcagccaagcatt |
149 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | | ||||| | ||| ||||| |||||||||| |||| | || |||| || |||| ||| |
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|
| T |
25040598 |
ataagtcaaataaagaactctattcttggcaccagctcgatgatgaccgttgtacttgcaaaaatacttcaattgttcaagcttgcaacaaccaattatt |
25040697 |
T |
|
| Q |
150 |
tgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgttttgttgattacagtgcacacaattaggcaatg |
249 |
Q |
| |
|
||||| | |||||||||| ||| |||||| || |||||| |||||||| ||||| || ||||| |||| |||||| || |||| ||| || |||||| |
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| T |
25040698 |
tgtcccagcaacagaaacaaccaattgatattctttttcttctcagcaatcaccggtttaacactattttcttgattgcaatgcaaacattttggcaatt |
25040797 |
T |
|
| Q |
250 |
ttggcttcatccaaatggttggcgccctgtcatgcatg |
287 |
Q |
| |
|
|||| |||||| |||| ||| ||||| ||||||||| |
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| T |
25040798 |
ttggattcatcaaaatttgtggtgccctatcatgcatg |
25040835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 338 - 423
Target Start/End: Original strand, 25040886 - 25040971
Alignment:
| Q |
338 |
caaatcaaaagacatttggaacttttctttgcatttcttgcactgaacagctccggtgatattaactattctattttgcaagagat |
423 |
Q |
| |
|
||||||||||||||||||||||||| |||||| | ||||| |||||| | |||||||| |||| ||||| ||||| ||||||| |
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| T |
25040886 |
caaatcaaaagacatttggaactttgttttgcaactattgcattgaacatcgccggtgatgttaaagattctgttttgtaagagat |
25040971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 24 - 238
Target Start/End: Original strand, 10124187 - 10124400
Alignment:
| Q |
24 |
gatcaagttgtttgcaagagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagct |
123 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| | | ||||| | | | ||||| ||||| |||| | |
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| T |
10124187 |
gatcaagttgtttgcaa-agttcaagataagttaaataaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaaaatatttcaatt |
10124285 |
T |
|
| Q |
124 |
gtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgttttgttg |
223 |
Q |
| |
|
||| | || | || || |||||||||||||||| |||||||||| ||| |||||| || |||||| |||||||||||||| ||||||| ||||| ||| |
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|
| T |
10124286 |
gttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattaccggtttcacacagttttcttg |
10124385 |
T |
|
| Q |
224 |
attacagtgcacaca |
238 |
Q |
| |
|
||| || |||||||| |
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|
| T |
10124386 |
attgcaatgcacaca |
10124400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 28649786 - 28649982
Alignment:
| Q |
22 |
atgatcaagttgtttgcaagagtccaagataagttaaataaagaactctattctt-ggcacctgattcatgattcttggtgtgtttgcagaaatacttca |
120 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||||||||||||||||||||| || |||| || | ||||| ||| | | ||||| |||||||||| |
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| T |
28649786 |
atgatcaagttatttgcat-agttcaagataagttaaataaagaactctattttttggcat-tgttctatgatggttgttatacttgcaaaaatacttca |
28649883 |
T |
|
| Q |
121 |
gctgtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgtttt |
219 |
Q |
| |
|
|||||| | |||| || |||||||||||||| || |||| ||||| ||| || ||| || |||||| |||||||||| |||||||||| |||||| |
|
|
| T |
28649884 |
attgtttaagattgcaacaaccaagcatttgtcccaacaacaaaaacaaccaattaatattctttttcttctcagcaattatcggcttcacattgtttt |
28649982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 50 - 226
Target Start/End: Complemental strand, 21393244 - 21393068
Alignment:
| Q |
50 |
ataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagctgtttacgcgtgcagcagccaagcatt |
149 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | | ||||| ||| ||| ||||| |||||||||| |||| | || |||| || || |||||| |
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|
| T |
21393244 |
ataagtcaaataaagaactctattcttggcaccggttcgatgatgattgttgtacttgcaaaaatacttcaattgttcaagcttgcaacaaccgagcatt |
21393145 |
T |
|
| Q |
150 |
tgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgttttgttgatt |
226 |
Q |
| |
|
||||| | || ||||||| ||| |||||| || |||||| || ||||||||||| ||||||||||||| |||||| |
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|
| T |
21393144 |
tgtcccagcaatagaaacaaccaattgatattctttttcttctcggcaattaccggtttcacactgttttcttgatt |
21393068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 132 - 286
Target Start/End: Original strand, 1975173 - 1975327
Alignment:
| Q |
132 |
gtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgttttgttgattacagt |
231 |
Q |
| |
|
||||| || |||||||||||||| | |||| ||||| ||| ||||||||| |||||| | ||||||||| || |||||||| |||| |||||| || | |
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| T |
1975173 |
gtgcaacaaccaagcatttgtcccatcaacataaacaaccaattgatactctttttcttcttagcaattacaggtttcacactatttttttgattgcaat |
1975272 |
T |
|
| Q |
232 |
gcacacaattaggcaatgttggcttcatccaaatggttggcgccctgtcatgcat |
286 |
Q |
| |
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| ||||| ||||||||| |||| | ||| ||||| ||||| ||||| ||| |||| |
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|
| T |
1975273 |
gtacacatttaggcaatattggatgcattcaaattgttggtgccctatcacgcat |
1975327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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