View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13742_low_2 (Length: 374)
Name: NF13742_low_2
Description: NF13742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13742_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 8692814 - 8692575
Alignment:
| Q |
1 |
agtgatgtgagaatgaattttagtgccattttgtgttacaattgaaccttgtttagattggttagttaaatgtgatatgatggaagaagagaatttccaa |
100 |
Q |
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| T |
8692814 |
agtgatgttagaatgagttttggtgccattttgggtttcaattgaaccttgtttagatatgttacttaaatgtgatatgatgaaagaagagaatttccaa |
8692715 |
T |
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| Q |
101 |
agctcaaatttgatgaaaatgctaatgggttttgttacttatatagag--ttcccacatgcaaattttttgggtcaaacccccacatacaatttatgctt |
198 |
Q |
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| T |
8692714 |
agctcaaatt-gatgaaaatgctaatgggttttgttatttatatagagagttcccacatgcaagttttttgggtcaaacccccacatacaatttatgctt |
8692616 |
T |
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| Q |
199 |
agctattttgtttcttttctttgctgtaattgtcccatgtt |
239 |
Q |
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| T |
8692615 |
aactattttgtttcttttctttgctgtaattgtcccatgtt |
8692575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 53 - 233
Target Start/End: Original strand, 8696487 - 8696667
Alignment:
| Q |
53 |
ttagattggttagttaaatgtgatatgatggaagaagagaatttccaaagctcaaatttgatgaaaatgctaatgggttttgttacttatatagagttcc |
152 |
Q |
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| T |
8696487 |
ttagataggttacttaaatgtgatatgatgaaagaagagaatttccaaagctcaaatttgatgaaaatgctaatgggttttgttacttatatagagttcc |
8696586 |
T |
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| Q |
153 |
cacatgcaaattttttgggtcaaacccccacatacaatttatgcttagctattttgtttcttttctttgctgtaattgtcc |
233 |
Q |
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| T |
8696587 |
cacatgcaaattttttgggtcaaatccccacatacaatttatgcttagctattttgtttcttttctttgctgtaattgtcc |
8696667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 238 - 359
Target Start/End: Complemental strand, 8692535 - 8692411
Alignment:
| Q |
238 |
tttaataatagctggtcgggtaattaagcacccattatt---ttgattatgaattaagcaggcattattgatgtaagtagatttaatagagatataatta |
334 |
Q |
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| T |
8692535 |
tttaataatagctggtcggttaattaagcacccattattattttgattatgaattaagcaggcattattgatgtaagtagatttaatagagatataatta |
8692436 |
T |
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| Q |
335 |
gattcatagaaaagattgatgagat |
359 |
Q |
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| T |
8692435 |
gattcatagaaaagattgatgagat |
8692411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 69 - 239
Target Start/End: Complemental strand, 8678539 - 8678359
Alignment:
| Q |
69 |
aatgtgatatgatggaagaagagaatttccaaagctcaaatttgatgaaaatgctaatgggttttgttacttatatagag-------------ttcccac |
155 |
Q |
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| T |
8678539 |
aatgtgatatgatggaagaagagaatttccaaagctcaaatttgatgaaaatgctaatggggtttgttgcttatatagagatttcctaacatattcccac |
8678440 |
T |
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| Q |
156 |
atgcaa-attttttgggtcaaacccccacatacaatttatgcttagctattttgtttcttttctttgctgtaattgtcccatgtt |
239 |
Q |
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| T |
8678439 |
atgcaatatttttttggtcaaatccccacatgcaa-ttatgcttagctattttgtttctt---tttgctgtaattatcccatgtt |
8678359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 8674583 - 8674446
Alignment:
| Q |
1 |
agtgatgtgagaatgaattttagtgccattttgtgttacaattgaaccttgtttagattggttagttaaatgtgatatgatggaagaagaga-atttcca |
99 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||| ||| || |
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| T |
8674583 |
agtgatgtgagaatgaatttttgtgccattttgtgttacaattgaacctt-----ggttggtt-----aatgtgatatgatggaagaagagagcttttca |
8674494 |
T |
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| Q |
100 |
aagctcaaatttgatgaaaatgctaatgggttttgttacttatataga |
147 |
Q |
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| T |
8674493 |
atgctcaagtttgatgaaaatgctaatggggtgtgttacttaaataga |
8674446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 8687883 - 8687938
Alignment:
| Q |
1 |
agtgatgtgagaatgaattttagtgccattttgtgttacaattgaaccttgtttag |
56 |
Q |
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| T |
8687883 |
agtgatgtgagaatgaatttttgttccattttgtgttacaattgaaccttggttag |
8687938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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