View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13743_high_3 (Length: 424)

Name: NF13743_high_3
Description: NF13743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13743_high_3
NF13743_high_3
[»] scaffold0147 (1 HSPs)
scaffold0147 (2-410)||(14424-14832)


Alignment Details
Target: scaffold0147 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 2 - 410
Target Start/End: Complemental strand, 14832 - 14424
Alignment:
Q  2 atggacatcatcatgtataagatatactgttccgttatgtccttataatccatgtttgtgctttcaaagttatgtcagtagccaaagttcagtagctttc 101  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14832 atggtcatcctcatgtataagatatactgttccgttatgtccttataatccatgtttgtgctttcaaagttatgtcagtagccaaagttcagtagctttc 14733  T
Q  102 cactggacacaatttttcaagaaagcaacagataatgccaatatgttgaaagactagtcgctataacttcataatttaggaaagaggtgggtgggagagt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14732 cactggacacaatttttcaagaaagcaacagataatgccaatatgttgaaagactagtcgctataacttcataatttaggaaagaggtgggtgggagagt 14633  T
Q  202 cattgaaactatggcaagtgtccaatagggtcattcattgcagtaaatggaatgctctcttctcattgccaactttactatagaatgtggaccatacatc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14632 cattgaaactatggcaagtgtccaatagggtcattcattgcagtaaatggaatgctctcttctcattgccaactttactatagaatgtggaccatacatc 14533  T
Q  302 tcttgtttttgcaaattaaataagtgcttctgactatagaatgtgtgacattaattattttcagtgatacatactgaattttctgttaaaaagaagtgag 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14532 tcttgtttttgcaaattaaataagtgcttctgactatagaatgtgtgacattaattattttcagtgatacatactgaattttctgttaaaaagaagtgag 14433  T
Q  402 ttgaatctg 410  Q
    |||||||||    
T  14432 ttgaatctg 14424  T

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