View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13743_high_4 (Length: 416)
Name: NF13743_high_4
Description: NF13743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13743_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 22807704 - 22807967
Alignment:
| Q |
17 |
ctaaattacaaccaactaagtaaaaaatgttcccaccgcac--ttaaatcagacattgtctgcaatgtaaaaattaatataaagtgagaaaaaggaacga |
114 |
Q |
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| T |
22807704 |
ctaaattaaaaccaactaagtgtaaaatgttccccccccacacttaaatcagacattgttcgcaatgtaacaattaatataaagtgagaaaaaggaagga |
22807803 |
T |
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| Q |
115 |
ccacacccgaggagctaaggggtagctgctgaagggtatgaaggctcctccaaggagagctcttcaacaatttcttcttcaggcatcagactttgataga |
214 |
Q |
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| T |
22807804 |
acacacccgaggagctaaggggtagctgctggagggtatgaaggctcctccaaggagagctcttcaacaatttcttcttcaggcatcagactttcatgga |
22807903 |
T |
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| Q |
215 |
aaagcttcagccgctgtccctttactttgaacactttgtcggtacctgcacttttaacctcaac |
278 |
Q |
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| T |
22807904 |
acagcttcatccgctgactgtttactttgaacactttgtcggtacctgcacttttaatctcaac |
22807967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 305 - 395
Target Start/End: Original strand, 22807964 - 22808054
Alignment:
| Q |
305 |
caacaaaaggtccaatccatttggaccgaagcttacctgccatgatttttaaacgagagttaaacaataaaactttttggccaattgagaa |
395 |
Q |
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| T |
22807964 |
caacaaaaggtccaatccatttggaccgaagcttacctgccatgatttttaaacgagagttaaacaataaaattttctggccaattgagaa |
22808054 |
T |
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