View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13743_high_8 (Length: 355)
Name: NF13743_high_8
Description: NF13743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13743_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 25690660 - 25691001
Alignment:
| Q |
1 |
ttattagtcgaaccaacatcttggtctctccatcaccaccaacctccatggtccaattctcaaatccatgaaaacacaccccattacaacctcaaaaaca |
100 |
Q |
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| T |
25690660 |
ttattagtcgaaccaacatcttggtctctccatcaccaccaacctccatggttcaattctcaaatccatgaaaacacaccccattacaacctcaaaaaca |
25690759 |
T |
|
| Q |
101 |
tagaagatgaagaattagacaccaccaccc---tcgtaaaacccgaagacgaaaaagaatcaatgtttgagaaacccttaacaccttccgacgtaggaaa |
197 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
25690760 |
tagaagatgaagaattagacaccaccaccaccgtcgtagaacccgaagacgaaaaagaatcaatgtttgagaaacccttaactccttctgacgtaggaaa |
25690859 |
T |
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| Q |
198 |
actcaaccgtcttgttatcccaaaacaatacgctgaaaaatactttccactcggcggagcagactccgccgagtgcaaaggacttttactaagttttgag |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25690860 |
actcaaccgtcttgttatcccaaaacaatacgctgaaaaatactttccactcggcggagcagactccgccgagtgcaaaggacttttactaagttttgaa |
25690959 |
T |
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| Q |
298 |
gatgagtcagggaagtgttggcgtttccgttactcatattgg |
339 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25690960 |
gatgagtcagggaagtgttggcgtttccgttactcttattgg |
25691001 |
T |
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