View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13743_low_1 (Length: 798)
Name: NF13743_low_1
Description: NF13743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13743_low_1 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 227 - 798
Target Start/End: Complemental strand, 4252603 - 4252001
Alignment:
| Q |
227 |
aaatcaaaaataagtggtgactattttgtttgttatagtgagttgtgaaatcaagcagatgtacatgcagtacaactaatagcattacatcctgcatcta |
326 |
Q |
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| T |
4252603 |
aaatcaaaaataagtggtgactattttgtttgttatagtgagttgtgaaatcaagcagatgtacatgcagtacaactaatagcattacatcctgcatcta |
4252504 |
T |
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| Q |
327 |
ttatgctgaattaaataaaagttttgtgtgagctttcatatatcttttcttccatttaattatcgattgacaactagagatattctaggcttcgggaata |
426 |
Q |
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| T |
4252503 |
ttatgctgaattaaataaaagttttgtgtgaactttcatatatcttttctttcatataattatcgattgaaaactagagatattctaggcttcgggaata |
4252404 |
T |
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| Q |
427 |
aaagggaatccagtggtaaaaatttagcaaaattcaattccattgtaatgtaataatttaaaagatg------agtttaaggtttc-----attatgtca |
515 |
Q |
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| T |
4252403 |
aaagggaatccaggggtaaaaatttagcaaaattaaattccattgtagcgtaataatttaaatgatgtaacttagtataaggtttcattgtattctgtca |
4252304 |
T |
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| Q |
516 |
aaaaatagggtttcattttcttttacaaagaatcgagggcctgtttgattacaatgataggatgacaaaatagatatacatatcctacttaaatctcg-- |
613 |
Q |
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| T |
4252303 |
aaaaatagggtttcattttcttttacaaagaatcgagggcctgtttgattacaatgatagggtgacaaaatagatatacatatcctacttaaatctcgta |
4252204 |
T |
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| Q |
614 |
--------------------tgtttgatgtatcaaggataaaataaaataaatctcatattttcgtgtttgctgttcggtttttggctttgaacatttgc |
693 |
Q |
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| T |
4252203 |
tttatcctacttaaatttcatgtttgatgtatcaaggataaaataaaa-aaatctcatattttcgtgtttgctgttcggtttttggctttgaacatgtgc |
4252105 |
T |
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| Q |
694 |
ctagtaagtggtcaatttgagagcaatacaatctactccttgttcccaagtctaacactactttctactacaaactatcaacttttatattatccaacta |
793 |
Q |
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| T |
4252104 |
ctagtaagtggtcaatttgagagcaatacaatctactccttgttcccaagtctcacactactttctactacaaactatcaacttctata-tatccaacta |
4252006 |
T |
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| Q |
794 |
tattc |
798 |
Q |
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||||| |
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| T |
4252005 |
tattc |
4252001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 4252823 - 4252635
Alignment:
| Q |
18 |
agggaagaggcaaaagccgataagggtcttgata-------ctcaaaaggaaaagggaaatggcgaaagctcatcatctgaggatgtgaagaagtttcaa |
110 |
Q |
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| T |
4252823 |
agggaagaggcaaaagccgataagggtcttgatagttgatactcaaaaggaaaagggaaatggtgaaagctcatcatctgaggatgtgaagaagttttaa |
4252724 |
T |
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| Q |
111 |
tggtctcctggatttatcttatggttttattcactcttaattagacgggca----atatggattctctttatagtgaggggttcataca |
195 |
Q |
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| T |
4252723 |
tggtctcctggatttatcttatggttttattcactcttaattagacgggcaatatatatggattctctttatagtgaggggttcataca |
4252635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 4238317 - 4238263
Alignment:
| Q |
232 |
aaaaataagtggtgactattttgtttgttatagtgagttgtgaaatcaagcagat |
286 |
Q |
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| T |
4238317 |
aaaaataattggtgactattttgtttcgtattgttagttgtgaaatcaagcagat |
4238263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 308 - 365
Target Start/End: Complemental strand, 4238228 - 4238172
Alignment:
| Q |
308 |
gcattacatcctgcatctattatgctgaattaaataaaagttttgtgtgagctttcat |
365 |
Q |
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| T |
4238228 |
gcattaca-cctgcatttactatggtgaattaaagaaaagttttgtgtgagctttcat |
4238172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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