View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13743_low_10 (Length: 350)
Name: NF13743_low_10
Description: NF13743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13743_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 26576688 - 26577003
Alignment:
| Q |
1 |
ctatcctcatgttctgacatgcattggtaataattgtgcttgtacttaacagtaagttgacacaacaattcgttacttttaaacttatacttttatttca |
100 |
Q |
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| T |
26576688 |
ctatcctcatgttctgagatgcattggtaaaaattgtgtttgtacttaacagtaagttgacacaacaatttgttacttttaaacttatacttttatttca |
26576787 |
T |
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| Q |
101 |
tcgagttgttactcatattacttctttgcatgattctaattttctctctaacattcaaatttcttgcacaggctgagaataaaaatggcattgcagaatt |
200 |
Q |
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| T |
26576788 |
acgagttgttactcatattacttctttgcatgattctaattttctctctaacattcaaatttcttgcacaggctgagaataaaaatggcattgcagaatt |
26576887 |
T |
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| Q |
201 |
ataaatgaactgcaataaataaagataacatgatttaaaaccatgtcgccttttgtggaaggggaggtgtgtctagcttgttgtagtttttgagttgtat |
300 |
Q |
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| T |
26576888 |
ataaatgaactgcaataaataaagatgacatggttt-------------------tggaaggggaggtgtgtctagcttgtggtagtttttgagttgtat |
26576968 |
T |
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| Q |
301 |
ctctatgctttagaaaatttgtatttgtttttagt |
335 |
Q |
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| T |
26576969 |
ctctatgctttagaaaatttgtatttgtttttagt |
26577003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 26584609 - 26584826
Alignment:
| Q |
17 |
acatgcattggtaataattgtgcttgtacttaacagtaagttgacacaacaattcgttacttttaaacttatacttttatttcatcgagttgttactcat |
116 |
Q |
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| T |
26584609 |
acatgcattgataataattgtttttgtatttaatcgtaagttgatacaaaaatttgttacttttaaacttatacttttatttcaatgagttgatatttat |
26584708 |
T |
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| Q |
117 |
attacttctttgcatgattctaattttctctctaacattcaaatttcttgcacaggctgagaataaaaatggcattgcagaattataaatgaactgcaat |
216 |
Q |
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| T |
26584709 |
attacttcattgcacatttctatttttctctctaacattaaaatttccatgtcaggcttagaataaaagtgtcattgcagaattataaatgaactgcaat |
26584808 |
T |
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| Q |
217 |
aaataaagataacatgat |
234 |
Q |
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| T |
26584809 |
aaataaagataacgtgat |
26584826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 26571255 - 26571343
Alignment:
| Q |
140 |
ttttctctctaacattcaaatttcttgcacaggctgagaataaaaatggcattgcagaattataaatgaactgcaataaataaagataa |
228 |
Q |
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| T |
26571255 |
ttttctctttaacattcaaatttcttggacaggtcgagaataaaaatatcattgcagaattataaatgaactgcaataaataatgataa |
26571343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 26571156 - 26571222
Alignment:
| Q |
4 |
tcctcatgttctgacatgcattggtaataattgtgcttgtacttaacagtaagttgacacaacaatt |
70 |
Q |
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| T |
26571156 |
tcctgatgttccgacatgcattgataataattgtttttgtacttaacagtaagttgaaacaacaatt |
26571222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 26584856 - 26584901
Alignment:
| Q |
288 |
ttttgagttgtatctctatgctttagaaaatttgtatttgttttta |
333 |
Q |
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| T |
26584856 |
ttttgagttgtatctcactgctttagcaaatttgtatttgttttta |
26584901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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