View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13743_low_12 (Length: 335)
Name: NF13743_low_12
Description: NF13743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13743_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 52 - 325
Target Start/End: Original strand, 40847692 - 40847963
Alignment:
| Q |
52 |
accaatttttcgtctcacgaaatttgaagagacacaagatctcatttgtttctgcaacttcaatcattgctacaaaaaatacctaaatttcatatgtatt |
151 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40847692 |
accaatttttcgtctcacggaatttgaagagacacaagatctcatttgtttctgcaacttcaatcattgctacaaaaaatacctaaatttcataggtatt |
40847791 |
T |
|
| Q |
152 |
taaactttaattagnnnnnnnnnnnnnnnnnnnnnnccaattatataaagtttagctgagctgtt-tttgaatcagtgtagttaaaacaaatggctcaaa |
250 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
40847792 |
taaacttaaattag------ttctttttttttctttccaattatataaagtttagctgaactgttgtttgaatcactgtagttaaaacaaatggctcaaa |
40847885 |
T |
|
| Q |
251 |
gaatcatttaccaaagttttcacagt---aacaatagttgaattcacgattatgaattgagggtatgtttagtttcat |
325 |
Q |
| |
|
|||| ||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40847886 |
gaataatttaccaaagtttttacggtaacaacaagagttgaattcacgattatgaattgagggtatgtttagtttcat |
40847963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University