View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13743_low_13 (Length: 316)

Name: NF13743_low_13
Description: NF13743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13743_low_13
NF13743_low_13
[»] chr4 (15 HSPs)
chr4 (19-267)||(55173469-55173718)
chr4 (133-267)||(39161285-39161419)
chr4 (138-267)||(39161503-39161632)
chr4 (138-247)||(50509364-50509473)
chr4 (138-266)||(47096802-47096928)
chr4 (138-255)||(55173336-55173454)
chr4 (139-247)||(37996068-37996176)
chr4 (138-267)||(47097016-47097142)
chr4 (138-185)||(2623449-2623496)
chr4 (154-237)||(9738136-9738219)
chr4 (154-228)||(9738937-9739011)
chr4 (202-255)||(47096947-47097001)
chr4 (202-254)||(39161436-39161488)
chr4 (177-221)||(23752052-23752096)
chr4 (150-218)||(43419414-43419482)
[»] chr8 (18 HSPs)
chr8 (138-267)||(13884491-13884620)
chr8 (138-265)||(13884706-13884833)
chr8 (133-266)||(42126379-42126512)
chr8 (138-267)||(29714544-29714673)
chr8 (145-267)||(2554066-2554188)
chr8 (138-266)||(42126601-42126729)
chr8 (133-267)||(11867898-11868031)
chr8 (146-247)||(29714778-29714879)
chr8 (182-264)||(14996678-14996761)
chr8 (138-233)||(43416265-43416360)
chr8 (175-267)||(15862540-15862632)
chr8 (154-262)||(26745959-26746067)
chr8 (205-255)||(2554002-2554052)
chr8 (202-247)||(14996608-14996653)
chr8 (154-262)||(26745281-26745389)
chr8 (202-255)||(29714691-29714744)
chr8 (202-247)||(42126532-42126577)
chr8 (150-218)||(8095355-8095423)
[»] chr1 (18 HSPs)
chr1 (133-266)||(37189565-37189698)
chr1 (138-267)||(10824585-10824714)
chr1 (138-306)||(22683143-22683311)
chr1 (138-267)||(18844461-18844590)
chr1 (138-261)||(37189370-37189492)
chr1 (138-267)||(15825737-15825864)
chr1 (138-254)||(18844677-18844794)
chr1 (138-267)||(19056152-19056281)
chr1 (138-267)||(19056367-19056496)
chr1 (148-264)||(10824380-10824496)
chr1 (179-267)||(22683357-22683445)
chr1 (202-254)||(22683290-22683342)
chr1 (202-255)||(10824514-10824567)
chr1 (202-243)||(19056307-19056348)
chr1 (202-252)||(18844608-18844658)
chr1 (202-247)||(37189496-37189541)
chr1 (177-221)||(25035394-25035438)
chr1 (177-221)||(25040607-25040651)
[»] chr2 (22 HSPs)
chr2 (138-306)||(16973066-16973234)
chr2 (138-267)||(2916380-2916509)
chr2 (138-267)||(44594454-44594583)
chr2 (138-254)||(44594250-44594367)
chr2 (139-267)||(38982773-38982901)
chr2 (138-267)||(16973280-16973409)
chr2 (138-266)||(40987659-40987787)
chr2 (138-267)||(38982559-38982688)
chr2 (138-247)||(11533680-11533790)
chr2 (157-267)||(2916593-2916703)
chr2 (142-294)||(40987835-40987987)
chr2 (138-266)||(13559519-13559646)
chr2 (161-266)||(24125876-24125975)
chr2 (161-266)||(24126146-24126245)
chr2 (138-203)||(24125672-24125737)
chr2 (202-255)||(16973213-16973266)
chr2 (202-255)||(44594383-44594436)
chr2 (175-266)||(13559343-13559434)
chr2 (202-255)||(38982702-38982755)
chr2 (154-209)||(34826709-34826764)
chr2 (202-247)||(2916526-2916571)
chr2 (202-247)||(24125812-24125857)
[»] scaffold0060 (1 HSPs)
scaffold0060 (138-267)||(22921-23050)
[»] chr7 (19 HSPs)
chr7 (139-266)||(28715645-28715772)
chr7 (133-267)||(28715858-28715992)
chr7 (133-247)||(30862215-30862329)
chr7 (138-267)||(41985912-41986041)
chr7 (138-267)||(6474282-6474412)
chr7 (133-267)||(6474497-6474630)
chr7 (153-266)||(47373679-47373792)
chr7 (138-267)||(47373464-47373595)
chr7 (139-267)||(30862436-30862564)
chr7 (138-208)||(41986183-41986253)
chr7 (154-262)||(38408121-38408229)
chr7 (154-262)||(6271188-6271296)
chr7 (133-190)||(22226665-22226722)
chr7 (154-262)||(38407450-38407558)
chr7 (202-252)||(41986058-41986108)
chr7 (154-243)||(6270237-6270326)
chr7 (202-247)||(47373612-47373657)
chr7 (177-221)||(21171331-21171375)
chr7 (177-221)||(21171522-21171566)
[»] chr3 (14 HSPs)
chr3 (135-266)||(46003465-46003596)
chr3 (138-267)||(51663466-51663595)
chr3 (138-266)||(40244627-40244756)
chr3 (138-267)||(51663252-51663381)
chr3 (138-267)||(20538150-20538279)
chr3 (140-266)||(20537930-20538056)
chr3 (139-267)||(46003251-46003379)
chr3 (139-247)||(40364194-40364301)
chr3 (138-267)||(40364043-40364172)
chr3 (138-198)||(40244873-40244933)
chr3 (202-255)||(46003393-46003446)
chr3 (202-247)||(20538076-20538121)
chr3 (151-218)||(48867469-48867536)
chr3 (202-247)||(51663399-51663444)
[»] scaffold0781 (1 HSPs)
scaffold0781 (138-247)||(5271-5380)
[»] chr6 (16 HSPs)
chr6 (138-247)||(2216814-2216923)
chr6 (133-262)||(24798843-24798972)
chr6 (141-266)||(11643754-11643879)
chr6 (138-267)||(24798627-24798756)
chr6 (138-230)||(24690357-24690449)
chr6 (133-247)||(11643985-11644098)
chr6 (138-266)||(18494736-18494862)
chr6 (138-266)||(18494949-18495077)
chr6 (135-222)||(24690607-24690694)
chr6 (154-243)||(9954825-9954914)
chr6 (154-262)||(9955590-9955698)
chr6 (202-247)||(11643898-11643943)
chr6 (201-253)||(24798770-24798822)
chr6 (153-218)||(13800043-13800108)
chr6 (202-255)||(18494878-18494931)
chr6 (202-255)||(24690504-24690557)
[»] chr5 (5 HSPs)
chr5 (138-294)||(21249364-21249520)
chr5 (202-252)||(21249511-21249561)
chr5 (137-187)||(21249629-21249679)
chr5 (220-266)||(21249579-21249625)
chr5 (150-199)||(15857676-15857725)
[»] scaffold0036 (1 HSPs)
scaffold0036 (153-262)||(61042-61151)
[»] scaffold0034 (1 HSPs)
scaffold0034 (188-252)||(108047-108111)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 55173718 - 55173469
Alignment:
Q  19 caaaaagcaacagaaacagaatattattacctaagaaaagttattttagtattcttgagagaaacatatttggtggaatggaagagctctgatgtctgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  55173718 caaaaagcaacagaaacagaatattattacctaagaaaagttattttagtattcttgagagaaacatatttggtggaatggaagagctctgatatctgct 55173619  T
Q  119 at-nnnnnnnnnnnnttagacttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcc 217  Q
    ||             |||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  55173618 ataaaaaaaaaaaaattaggcttattcaatcacccggtcccttaacttaattgattgtctcaatttgatctcctaactataatttgtaccaatttggtcc 55173519  T
Q  218 cctatgttttgcttcgttactagttttagttctttctggtagtttctctc 267  Q
    |||||| ||||||| |||||| ||||||||  ||| || |||||||||||    
T  55173518 cctatgctttgctttgttacttgttttagtcttttttgctagtttctctc 55173469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 133 - 267
Target Start/End: Original strand, 39161285 - 39161419
Alignment:
Q  133 ttagacttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttc 232  Q
    |||| |||||||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39161285 ttaggcttattcaatcacccgatcctttaacttaattgaatgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttc 39161384  T
Q  233 gttactagttttagttctttctggtagtttctctc 267  Q
    ||||||||||||||| |||||||  ||||||||||    
T  39161385 gttactagttttagtcctttctgaaagtttctctc 39161419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 138 - 267
Target Start/End: Complemental strand, 39161632 - 39161503
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    ||||||||| || ||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||     
T  39161632 cttattcaaccatccggttccttaacttaattgattgttttaatttggtcccctaactataatttgtaccaatttagtcctctatgttttgctccgttat 39161533  T
Q  238 tagttttagttctttctggtagtttctctc 267  Q
    |||||||||| ||||||| |||||||||||    
T  39161532 tagttttagtcctttctgttagtttctctc 39161503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 138 - 247
Target Start/End: Complemental strand, 50509473 - 50509364
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||| | | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50509473 cttattcaatcatctgatcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttac 50509374  T
Q  238 tagttttagt 247  Q
    || |||||||    
T  50509373 taattttagt 50509364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 138 - 266
Target Start/End: Original strand, 47096802 - 47096928
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||    
T  47096802 cttattcaatcacctgatcccttaacttaattgattatctcaatttggtcccctaac-ataatttgtaccaattt-gccccctatgttttgcttcgttac 47096899  T
Q  238 tagttttagttctttctggtagtttctct 266  Q
    | |||||||| |||| || | ||||||||    
T  47096900 ttgttttagtcctttatgtttgtttctct 47096928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 138 - 255
Target Start/End: Original strand, 55173336 - 55173454
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggt-cccctatgttttgcttcgtta 236  Q
    ||||||| |||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||| ||||||| ||||||| |||||    
T  55173336 cttattcgatcatccggttccttaacttaattgattgtcttaatttggtcccctaactataatttgtattaatttggtccccctatattttgctccgtta 55173435  T
Q  237 ctagttttagttctttctg 255  Q
    ||||||||||| |||||||    
T  55173436 ctagttttagtcctttctg 55173454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 139 - 247
Target Start/End: Original strand, 37996068 - 37996176
Alignment:
Q  139 ttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 238  Q
    ||||||||||||| | |||||||| | || ||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||| |    
T  37996068 ttattcaatcacctgatcccttaattaaaatgattgtttcaatttggtcccttaactataatttgtatcaatttggtcccctatgttttgctttgttatt 37996167  T
Q  239 agttttagt 247  Q
    |||||||||    
T  37996168 agttttagt 37996176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 138 - 267
Target Start/End: Complemental strand, 47097142 - 47097016
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||| ||| || |||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |   |||||||||||  ||||||    
T  47097142 cttattcaatcatccgatctcttaacttaattgattgtctcaatttagtcctctaactataatttgtaccaatttgat---ctatgttttgccccgttac 47097046  T
Q  238 tagttttagttctttctggtagtttctctc 267  Q
    ||||||||||  ||| || |||||||||||    
T  47097045 tagttttagtcatttttgttagtttctctc 47097016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 2623496 - 2623449
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttgg 185  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2623496 cttattcaatcactcggtcccttaacttaattgattgtctcaatttgg 2623449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 9738136 - 9738219
Alignment:
Q  154 gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    ||||||||||||||||| ||||  ||| |||||||||||| ||||||||||||||| || |||| ||| |||||||| ||||||    
T  9738136 gtcccttaacttaattgtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttac 9738219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 9739011 - 9738937
Alignment:
Q  154 gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttg 228  Q
    |||||||||||| |||| |||| |||| |||||||||||| ||||||||||||||| || |||| ||| ||||||    
T  9739011 gtcccttaacttgattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttg 9738937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 47096947 - 47097001
Alignment:
Q  202 tgtaccaatttggtcccc-tatgttttgcttcgttactagttttagttctttctg 255  Q
    |||||||||||||||||| ||||||||||| | |||||||||||||| |||||||    
T  47096947 tgtaccaatttggtccccctatgttttgctccattactagttttagtcctttctg 47097001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 39161436 - 39161488
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttct 254  Q
    ||||||||||||||||| ||||||||| | |||| ||||||||||| ||||||    
T  39161436 tgtaccaatttggtcccatatgttttgatccgttcctagttttagtcctttct 39161488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 23752052 - 23752096
Alignment:
Q  177 tcaatttggtcccctaactataatttgtaccaatttggtccccta 221  Q
    ||||||||||||||||||| ||| ||||  |||||||||||||||    
T  23752052 tcaatttggtcccctaactttaaattgtctcaatttggtccccta 23752096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 43419482 - 43419414
Alignment:
Q  150 cccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtccc 218  Q
    ||||||||||||||||| || ||| ||||| ||| ||||| |||||||||  |||  ||||||||||||    
T  43419482 cccggtcccttaacttattttattttctcagtttcgtcccttaactataaagtgtctcaatttggtccc 43419414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 13884491 - 13884620
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13884491 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggccccctatgttttgcttcgttac 13884590  T
Q  238 tagttttagttctttctggtagtttctctc 267  Q
    ||||||||||  ||||||||||||||||||    
T  13884591 tagttttagtcttttctggtagtttctctc 13884620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 138 - 265
Target Start/End: Complemental strand, 13884833 - 13884706
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13884833 cttattcaatcacccggtcccttaacttaattgattgtctcaatttagtcccctaactataatttgtaccaatttggtcctctatgttttgcttcgttac 13884734  T
Q  238 tagttttagttctttctggtagtttctc 265  Q
    | |||||||| |||| || |||||||||    
T  13884733 tggttttagtcctttttgttagtttctc 13884706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 133 - 266
Target Start/End: Original strand, 42126379 - 42126512
Alignment:
Q  133 ttagacttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttc 232  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||| | | |||||||||||||||| |||||||| |||||||||||||||||    
T  42126379 ttaggcttattcaatcacccggtcccttaacttaattaattgtctcaatttgattctctaactataatttgtatcaatttggccccctatgttttgcttc 42126478  T
Q  233 gttactagttttagttctttctggtagtttctct 266  Q
    | ||||||||||||| ||||||||||||||||||    
T  42126479 gctactagttttagtcctttctggtagtttctct 42126512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 29714544 - 29714673
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||| |||||    
T  29714544 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccaaactatagtttgtaccaatttggtcccctatattttgctttgttac 29714643  T
Q  238 tagttttagttctttctggtagtttctctc 267  Q
    ||| |||| |  |||||| |||||||||||    
T  29714644 tagctttaatcatttctgttagtttctctc 29714673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 145 - 267
Target Start/End: Complemental strand, 2554188 - 2554066
Alignment:
Q  145 aatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagtttt 244  Q
    |||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| |||||| |||||    
T  2554188 aatcacctagtcccttaacttaattgattgtctcaatttgatcccctaactataatttgttccaatttggtctcctatgttttgctttgttacttgtttt 2554089  T
Q  245 agttctttctggtagtttctctc 267  Q
    ||||||||||| |||||||||||    
T  2554088 agttctttctgttagtttctctc 2554066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 138 - 266
Target Start/End: Complemental strand, 42126729 - 42126601
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||  || ||    
T  42126729 cttattcaatcacccggtcccttaacttaattgattatctcaatttgatcccctaactataatttgtaccaatttggtcctctaagttttgctctgtcac 42126630  T
Q  238 tagttttagttctttctggtagtttctct 266  Q
    || |||||||  |||||| ||||||||||    
T  42126629 taattttagtcatttctgttagtttctct 42126601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 133 - 267
Target Start/End: Complemental strand, 11868031 - 11867898
Alignment:
Q  133 ttagacttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttc 232  Q
    |||| |||||||||||||| ||||| |||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| |||||||||| ||     
T  11868031 ttaggcttattcaatcacctggtcc-ttaacttaattgattgtctcaatttggttccttaactataatttgtatcaatttggtcctctatgttttgattt 11867933  T
Q  233 gttactagttttagttctttctggtagtttctctc 267  Q
    || |||||||||||| |||| || |||||||||||    
T  11867932 gtcactagttttagtcctttatgttagtttctctc 11867898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 29714879 - 29714778
Alignment:
Q  146 atcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagtttta 245  Q
    |||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||    
T  29714879 atcacctggtcccttaacttaattgattgttttaatttggtcccttaactataatttgtatcaatttggtcctctatgttttgcttcattactagtttta 29714780  T
Q  246 gt 247  Q
    ||    
T  29714779 gt 29714778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 14996761 - 14996678
Alignment:
Q  182 ttggtcccctaactataatttgtaccaatttggtcccc-tatgttttgcttcgttactagttttagttctttctggtagtttct 264  Q
    |||||||||||| ||||||||||||||||||| ||||| |||||||||||| ||||||||||||||| ||||||| ||||||||    
T  14996761 ttggtcccctaattataatttgtaccaatttgatccccctatgttttgctttgttactagttttagtcctttctgttagtttct 14996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 138 - 233
Target Start/End: Original strand, 43416265 - 43416360
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 233  Q
    ||||||||||||  ||||| |||||||||||||||||||| |||||  |||||||||||||||||||| ||||||  || ||||||||||| ||||    
T  43416265 cttattcaatcattcggtctcttaacttaattgattgtcttaatttaatcccctaactataatttgtatcaatttaatctcctatgttttgtttcg 43416360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 267
Target Start/End: Complemental strand, 15862632 - 15862540
Alignment:
Q  175 tctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctggtagtttctctc 267  Q
    |||||||||| ||||||||||||||||||||  |||||||||| ||||| |||||| ||||||| |||||| | |||||   |||||||||||    
T  15862632 tctcaatttgatcccctaactataatttgtattaatttggtcctctatgatttgctccgttactggttttaatactttccattagtttctctc 15862540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 262
Target Start/End: Complemental strand, 26746067 - 26745959
Alignment:
Q  154 gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 253  Q
    ||||||||||||| ||| |||| |||| |||||||||||| ||||||||||||||| || |||| ||| |||||||| | |||| |||||  || |||||    
T  26746067 gtcccttaacttatttgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccattaccagtttcggtcctttc 26745968  T
Q  254 tggtagttt 262  Q
    || ||||||    
T  26745967 tgttagttt 26745959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 2554002 - 2554052
Alignment:
Q  205 accaatttggtcccctatgttttgcttcgttactagttttagttctttctg 255  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  2554002 accaatttggtcccctatgttttacttcgttactagttttagtcctttctg 2554052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 14996608 - 14996653
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 247  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  14996608 tgtactaatttggtcccctatgttttgcttcgttactagttttagt 14996653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 262
Target Start/End: Original strand, 26745281 - 26745389
Alignment:
Q  154 gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 253  Q
    ||||||||||||||||| ||||   || |||||||||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  || |||||    
T  26745281 gtcccttaacttaattgtttgtactaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttc 26745380  T
Q  254 tggtagttt 262  Q
    || ||||||    
T  26745381 tgttagttt 26745389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 29714691 - 29714744
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 255  Q
    ||||||||||||||| |||||||||| || |||||||||||||||| |||||||    
T  29714691 tgtaccaatttggtctcctatgttttactccgttactagttttagtcctttctg 29714744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 42126532 - 42126577
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 247  Q
    |||| |||||||||||||||||||||||| ||||  ||||||||||    
T  42126532 tgtatcaatttggtcccctatgttttgctccgttcttagttttagt 42126577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 8095355 - 8095423
Alignment:
Q  150 cccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtccc 218  Q
    ||||||||||||||||| || ||| ||||| ||||||||| ||||||| |  |||  ||||||||||||    
T  8095355 cccggtcccttaacttattttattttctcagtttggtcccttaactattaagtgtctcaatttggtccc 8095423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 37189698 - 37189565
Alignment:
Q  133 ttagacttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttc 232  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37189698 ttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccctatctataatttgtaccaatttggtcccctatgttttgcttc 37189599  T
Q  233 gttactagttttagttctttctggtagtttctct 266  Q
    |||||||||||||||  |||||||||||||||||    
T  37189598 gttactagttttagtcatttctggtagtttctct 37189565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 138 - 267
Target Start/End: Complemental strand, 10824714 - 10824585
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10824714 cttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttac 10824615  T
Q  238 tagttttagttctttctggtagtttctctc 267  Q
    |||||||||| |||||| ||||||||||||    
T  10824614 tagttttagtcctttctagtagtttctctc 10824585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 138 - 306
Target Start/End: Original strand, 22683143 - 22683311
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  22683143 cttattcaatcacccgctcctttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgctttgttac 22683242  T
Q  238 tagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaattgtgtcccctatg 306  Q
    |||||||||| ||||||| |||||||||||        ||||||||||||| |||||  ||||||||||    
T  22683243 tagttttagtcctttctgttagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccctatg 22683311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 18844461 - 18844590
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    ||||||||| |||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18844461 cttattcaaccacatggtcccttaacttaattgattatctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttac 18844560  T
Q  238 tagttttagttctttctggtagtttctctc 267  Q
    ||||||||||  ||||||||||||||||||    
T  18844561 tagttttagtcatttctggtagtttctctc 18844590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 138 - 261
Target Start/End: Original strand, 37189370 - 37189492
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||| ||||||    
T  37189370 cttattcaatcacccggtcc-ttaacttaattgattgtctcaatttggtctcataactataatttgtaccaatttggtcctctatgttttgctccgttac 37189468  T
Q  238 tagttttagttctttctggtagtt 261  Q
    |||||||||| ||||||| |||||    
T  37189469 tagttttagtcctttctgttagtt 37189492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 138 - 267
Target Start/End: Complemental strand, 15825864 - 15825737
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||     
T  15825864 cttattcaatcacccggtctcttaacttaattgattgtctcaatttggtcc--taactataatttgtaccaatttggtcccctatgttttgctttgttat 15825767  T
Q  238 tagttttagttctttctggtagtttctctc 267  Q
    |||||||||| |||| |  |||||||||||    
T  15825766 tagttttagtcctttttattagtttctctc 15825737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 138 - 254
Target Start/End: Complemental strand, 18844794 - 18844677
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtc-ccctaactataatttgtaccaatttggtcccctatgttttgcttcgtta 236  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||| |||||||||||| |||||    
T  18844794 cttattcaatcacccgatcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctccgtta 18844695  T
Q  237 ctagttttagttctttct 254  Q
    ||||||||||||||||||    
T  18844694 ctagttttagttctttct 18844677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 19056152 - 19056281
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||||| | ||||||||||||||||||||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||    
T  19056152 cttattcaatcacctgatcccttaacttaattgattgtattaatttggtcccctaattataatttgtatcaatttggtcccctatattttgctttgttac 19056251  T
Q  238 tagttttagttctttctggtagtttctctc 267  Q
    ||||||||||  |||||| |||||||||||    
T  19056252 tagttttagtcttttctgttagtttctctc 19056281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 138 - 267
Target Start/End: Complemental strand, 19056496 - 19056367
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||  |||||||||||||| |||||    
T  19056496 cttattcaatcatccggtcccttaacttaattgattgttttaatttggtcccctaactataatctgtaccaatttggtatcctatgttttgctttgttac 19056397  T
Q  238 tagttttagttctttctggtagtttctctc 267  Q
    ||||||||||  ||||||  ||||||||||    
T  19056396 tagttttagtcatttctgtcagtttctctc 19056367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 148 - 264
Target Start/End: Original strand, 10824380 - 10824496
Alignment:
Q  148 cacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagt 247  Q
    |||||||||| ||||||||||||||| |  |||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||    
T  10824380 cacccggtcctttaacttaattgattattgcaatttggtcccctaattataatttgtatcaatttggtcctctatgttttgctccgttactagttttagt 10824479  T
Q  248 tctttctggtagtttct 264  Q
     ||||||| ||||||||    
T  10824480 cctttctgttagtttct 10824496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 22683445 - 22683357
Alignment:
Q  179 aatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctggtagtttctctc 267  Q
    ||||||||||||||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||  |||||||||||    
T  22683445 aatttggtcccctaacttttatttgtaccaatttggtcctctatgttttgctccgttactagttttagtcctttctcttagtttctctc 22683357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 22683290 - 22683342
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttct 254  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  22683290 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttct 22683342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 10824567 - 10824514
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 255  Q
    |||||||||||| |||||||||||||||| |||| ||||||||||| |||||||    
T  10824567 tgtaccaatttgatcccctatgttttgctccgttcctagttttagtcctttctg 10824514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 19056348 - 19056307
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttt 243  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  19056348 tgtaccaatttggtcccctgtgttttgcttcgttactagttt 19056307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 18844608 - 18844658
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 252  Q
    ||||||||||| |||||||||||||| || |||| ||||||||||| ||||    
T  18844608 tgtaccaatttagtcccctatgttttactccgttcctagttttagtccttt 18844658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 37189541 - 37189496
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 247  Q
    |||||||||| |||||||| ||||||||| |||| |||||||||||    
T  37189541 tgtaccaattcggtcccctgtgttttgctccgttcctagttttagt 37189496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 25035394 - 25035438
Alignment:
Q  177 tcaatttggtcccctaactataatttgtaccaatttggtccccta 221  Q
    ||||||||||||||||||| ||| ||||  |||||||||||||||    
T  25035394 tcaatttggtcccctaactttaaattgtctcaatttggtccccta 25035438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 25040607 - 25040651
Alignment:
Q  177 tcaatttggtcccctaactataatttgtaccaatttggtccccta 221  Q
    ||||||||||||||||||| ||| ||||  |||||||||||||||    
T  25040607 tcaatttggtcccctaactttaaattgtctcaatttggtccccta 25040651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 138 - 306
Target Start/End: Original strand, 16973066 - 16973234
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16973066 cttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactatagtttgtaccaatttggtcccctatgttttgcttcgttac 16973165  T
Q  238 tagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaattgtgtcccctatg 306  Q
    |||||||| ||||||||| |||||||||||        ||||||||||||| |||||  ||||||||||    
T  16973166 tagttttaattctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccctatg 16973234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 2916380 - 2916509
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2916380 cttattcaatcacccgatctcttaacttaattgattgtctcaatttgatcccctaactataatttgtaccaatttggtcccctatgttttgctttgttac 2916479  T
Q  238 tagttttagttctttctggtagtttctctc 267  Q
    |||||||| | ||||||| |||||||||||    
T  2916480 tagttttaatcctttctgttagtttctctc 2916509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 138 - 267
Target Start/End: Complemental strand, 44594583 - 44594454
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  44594583 cttattcaatcacccggtcctttaatttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtccattatgttttgcttcgttac 44594484  T
Q  238 tagttttagttctttctggtagtttctctc 267  Q
    ||||||||||  ||||||||||||||||||    
T  44594483 tagttttagtcatttctggtagtttctctc 44594454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 138 - 254
Target Start/End: Original strand, 44594250 - 44594367
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtc-ccctaactataatttgtaccaatttggtcccctatgttttgcttcgtta 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||| ||||||||||||  ||||    
T  44594250 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctctgtta 44594349  T
Q  237 ctagttttagttctttct 254  Q
    ||||||||||||||||||    
T  44594350 ctagttttagttctttct 44594367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 139 - 267
Target Start/End: Complemental strand, 38982901 - 38982773
Alignment:
Q  139 ttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 238  Q
    ||||||| |||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| || ||||||||||||| |||||    
T  38982901 ttattcagtcaccaagtcccttaacttaattgattgtctcaatttggtcccttaactataatttgtatcaatttggttccttatgttttgcttcattact 38982802  T
Q  239 agttttagttctttctggtagtttctctc 267  Q
    |||||||||  ||||||||||||||||||    
T  38982801 agttttagtcatttctggtagtttctctc 38982773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 138 - 267
Target Start/End: Complemental strand, 16973409 - 16973280
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||| | ||||    
T  16973409 cttattcaatcacatggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtgtcaatttggtcctctatgttttgctccattac 16973310  T
Q  238 tagttttagttctttctggtagtttctctc 267  Q
    ||||||||||  ||||||  ||||||||||    
T  16973309 tagttttagtcatttctgtcagtttctctc 16973280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 138 - 266
Target Start/End: Original strand, 40987659 - 40987787
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||| || |||||    
T  40987659 cttatttaatcatccggtcccttaacttaattgattgtctcaatttggttccctaactataatttgtaccaatttagtctcatatgttttgatttgttac 40987758  T
Q  238 tagttttagttctttctggtagtttctct 266  Q
    ||||||||||  ||| || ||||||||||    
T  40987759 tagttttagtcttttatgttagtttctct 40987787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 38982559 - 38982688
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||| ||||||||||| ||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||   |||||||||||||||| |    
T  38982559 cttaatcaatcacccgatcctttaacttaattgattgtctcaatttggctccctaactataatttgtaccaatttggtcatttatgttttgcttcgttgc 38982658  T
Q  238 tagttttagttctttctggtagtttctctc 267  Q
    |||||||||| ||||||  ||||| |||||    
T  38982659 tagttttagtcctttctattagttactctc 38982688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 138 - 247
Target Start/End: Complemental strand, 11533790 - 11533680
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggt-cccctatgttttgcttcgtta 236  Q
    |||||||||||| | |||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||  |||    
T  11533790 cttattcaatcatcaggtctcttaacttaagtgattgtctcaatttggtcccccaactataatttgtaccaatttggtccccctatgttttgctttatta 11533691  T
Q  237 ctagttttagt 247  Q
    |||||||||||    
T  11533690 ctagttttagt 11533680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 157 - 267
Target Start/End: Complemental strand, 2916703 - 2916593
Alignment:
Q  157 ccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctgg 256  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| |||| |||||||  |||||||||||| || |||||||     
T  2916703 ccttaacttaattgattgtctcaatttggtcccctaactattatttgtaccaacttgatcctctatattttgctctgttactagttttggtcctttctgt 2916604  T
Q  257 tagtttctctc 267  Q
    |||||||||||    
T  2916603 tagtttctctc 2916593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 142 - 294
Target Start/End: Complemental strand, 40987987 - 40987835
Alignment:
Q  142 ttcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagt 241  Q
    ||||||||||||||| |||||||||||| |||||||||||||| ||| ||||||||||||||||  ||||||||||||||| |||||||   || ||| |    
T  40987987 ttcaatcacccggtctcttaacttaattaattgtctcaatttgatcctctaactataatttgtattaatttggtcccctatattttgctctattgctaat 40987888  T
Q  242 tttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatt 294  Q
    ||||||  |||||| |||||||||||        |||||||||||||||||||    
T  40987887 tttagtcatttctgttagtttctctcaaaaaaccgttaacttatgtatcaatt 40987835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 266
Target Start/End: Complemental strand, 13559646 - 13559519
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||| |||||||| | || ||||||  |||||    
T  13559646 cttattcaatcatccggtcccttaacttaattgattgtttcaatttggttccctaactataatttgtatcaa-ttggtcccttgtgctttgctctgttac 13559548  T
Q  238 tagttttagttctttctggtagtttctct 266  Q
    ||| ||||||  ||| || ||||||||||    
T  13559547 tagatttagtcatttatgttagtttctct 13559519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 161 - 266
Target Start/End: Complemental strand, 24125975 - 24125876
Alignment:
Q  161 aacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctggtagt 260  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||      ||||||||||||||||||| ||||    
T  24125975 aacttaattaattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagttctttctgttagt 24125882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 161 - 266
Target Start/End: Complemental strand, 24126245 - 24126146
Alignment:
Q  161 aacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctggtagt 260  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||      ||||||||||| |||| || ||||    
T  24126245 aacttaattgattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagtcctttatgttagt 24126152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 24125672 - 24125737
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttg 203  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24125672 cttattcactcaaccggtcccttaacttaattgattgtctcaatttgatcccctaactataatttg 24125737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 16973213 - 16973266
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 255  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  16973213 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttctg 16973266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 44594436 - 44594383
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 255  Q
    ||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||    
T  44594436 tgtaccaatttagtcccctatgttttgctccgttcctagttttagtcctttctg 44594383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 266
Target Start/End: Original strand, 13559343 - 13559434
Alignment:
Q  175 tctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctggtagtttctct 266  Q
    |||||| | |||| ||||||||||||||||  |||||||||| | ||| ||||| || |||| ||||||||||  |||||| ||||||||||    
T  13559343 tctcaactcggtctcctaactataatttgtttcaatttggtctcatatattttgttttgttattagttttagtcatttctgttagtttctct 13559434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 38982755 - 38982702
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 255  Q
    ||||||||||||||||| ||||||||||| |||| || |||||||| |||||||    
T  38982755 tgtaccaatttggtcccttatgttttgctccgttcctggttttagtcctttctg 38982702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 34826764 - 34826709
Alignment:
Q  154 gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaa 209  Q
    ||||||||||||||||| |||| |||| |||||||| ||| | |||||||||||||    
T  34826764 gtcccttaacttaattgtttgtatcaaattggtcccgtaaatttaatttgtaccaa 34826709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 2916526 - 2916571
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 247  Q
    ||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  2916526 tgtaccaatttggtcccctacattttgctccgttattagttttagt 2916571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 24125857 - 24125812
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 247  Q
    |||| ||||||||||||||||||||||||  |||| ||||||||||    
T  24125857 tgtatcaatttggtcccctatgttttgctctgttattagttttagt 24125812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 138 - 267
Target Start/End: Complemental strand, 23050 - 22921
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||    
T  23050 cttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcctctatgttttgctccgttac 22951  T
Q  238 tagttttagttctttctggtagtttctctc 267  Q
    |||||||||| ||||||| |||||||||||    
T  22950 tagttttagtcctttctgttagtttctctc 22921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 139 - 266
Target Start/End: Original strand, 28715645 - 28715772
Alignment:
Q  139 ttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 238  Q
    ||||||||||||||||||||||||||||||| ||||| | ||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28715645 ttattcaatcacccggtcccttaacttaattaattgttttaatttggtttcctaactataatttgtatcaatttggtcccctatgttttgcttcgttact 28715744  T
Q  239 agttttagttctttctggtagtttctct 266  Q
    ||||||||| ||||||||||||||||||    
T  28715745 agttttagtcctttctggtagtttctct 28715772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 133 - 267
Target Start/End: Complemental strand, 28715992 - 28715858
Alignment:
Q  133 ttagacttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttc 232  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||      
T  28715992 ttaggcttattcaattacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcctctaagttttgctca 28715893  T
Q  233 gttactagttttagttctttctggtagtttctctc 267  Q
    || ||||||||||||  |||||| |||||||||||    
T  28715892 gtcactagttttagtcatttctgttagtttctctc 28715858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 133 - 247
Target Start/End: Original strand, 30862215 - 30862329
Alignment:
Q  133 ttagacttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttc 232  Q
    |||| ||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  30862215 ttaggcttattcaatcattcggtcccttaacttaattgattgtctgaatttggtcccctaactataatttgtaccaatttggtcccctatattttgcttt 30862314  T
Q  233 gttactagttttagt 247  Q
    |||||||||||||||    
T  30862315 gttactagttttagt 30862329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 41985912 - 41986041
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||| |||||||||||| |||||    
T  41985912 cttattcaatcacccagtcccttaacttaattgattgtctcaatttgatcccctaactataatttgtttcaatttggtcccatatgttttgctttgttac 41986011  T
Q  238 tagttttagttctttctggtagtttctctc 267  Q
    || ||||||| ||||| | |||||||||||    
T  41986012 taattttagtcctttccgttagtttctctc 41986041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 6474282 - 6474412
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatg-ttttgcttcgtta 236  Q
    |||||||||| ||| | |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||| ||||    
T  6474282 cttattcaattaccggatcccttaacttaattgattgtctcaatttgatcccctaactataatttatatcaatttggtcccctatgtttttgctttgtta 6474381  T
Q  237 ctagttttagttctttctggtagtttctctc 267  Q
    |||||||||||  |||||| |||||||||||    
T  6474382 ctagttttagtcttttctgttagtttctctc 6474412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 133 - 267
Target Start/End: Complemental strand, 6474630 - 6474497
Alignment:
Q  133 ttagacttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttc 232  Q
    |||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| ||||| |||| |||| ||||||      
T  6474630 ttaggcttattcaatcacccgatcccttaacttaattgattgtcttaatttggtctcctaactataa-ttgtaccgatttgctcccttatgctttgctct 6474532  T
Q  233 gttactagttttagttctttctggtagtttctctc 267  Q
    ||||||||||||||| |||| || |||||||||||    
T  6474531 gttactagttttagtcctttatgttagtttctctc 6474497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 153 - 266
Target Start/End: Complemental strand, 47373792 - 47373679
Alignment:
Q  153 ggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 252  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| | ||||||||| |  ||||||||||||| | ||||    
T  47373792 ggtcccttaacttaattgattgtctcaatttggtcccctaattataatttgtaccaatttagtctcatatgttttgatgtgttactagttttaatccttt 47373693  T
Q  253 ctggtagtttctct 266  Q
     || ||||||||||    
T  47373692 atgttagtttctct 47373679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 47373464 - 47373595
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactata--atttgtaccaatttggtcccctatgttttgcttcgtt 235  Q
    ||||||||||||| || || ||||||||||||||||||||||||||| ||| |||| ||||  ||||||||||||||||||||||||||||||||  |||    
T  47373464 cttattcaatcactcgatctcttaacttaattgattgtctcaatttgatcctctaattatataatttgtaccaatttggtcccctatgttttgctctgtt 47373563  T
Q  236 actagttttagttctttctggtagtttctctc 267  Q
     |||||||||||  ||| || |||||||||||    
T  47373564 gctagttttagtcatttatgttagtttctctc 47373595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 139 - 267
Target Start/End: Complemental strand, 30862564 - 30862436
Alignment:
Q  139 ttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 238  Q
    |||||||||||   |||||||||| | |||||||||| ||||||| || |||||||||||||||||| |||||||||||| |||||||||||  ||||||    
T  30862564 ttattcaatcaattggtcccttaattgaattgattgtttcaattttgttccctaactataatttgtatcaatttggtcccttatgttttgctctgttact 30862465  T
Q  239 agttttagttctttctggtagtttctctc 267  Q
    | |||||||  |||||| |||||||||||    
T  30862464 aattttagtcttttctgttagtttctctc 30862436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 41986253 - 41986183
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtacca 208  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  41986253 cttattcaatcacccggttccttaacttaattgtttgtctcaatttgatcccctaactataatttgtacca 41986183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 154 - 262
Target Start/End: Complemental strand, 38408229 - 38408121
Alignment:
Q  154 gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 253  Q
    ||||||||||||||||| |||| |||| |||||||||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  || |||||    
T  38408229 gtcccttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttc 38408130  T
Q  254 tggtagttt 262  Q
    || ||||||    
T  38408129 tgttagttt 38408121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 262
Target Start/End: Complemental strand, 6271296 - 6271188
Alignment:
Q  154 gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 253  Q
    ||||||||||||||||| || |  ||| |||||||||||| ||||||||||||||| || ||||  || |||||||| ||||||||||||  || |||||    
T  6271296 gtcccttaacttaattgtttctaccaaattggtcccctaaatataatttgtaccaaattcgtcctttaagttttgctccgttactagtttcggtcctttc 6271197  T
Q  254 tggtagttt 262  Q
    || ||||||    
T  6271196 tgttagttt 6271188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 22226722 - 22226665
Alignment:
Q  133 ttagacttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccc 190  Q
    |||| |||||||||||||| | ||||||| ||||||||||||||||||||||||||||    
T  22226722 ttaggcttattcaatcacctgatcccttagcttaattgattgtctcaatttggtcccc 22226665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 262
Target Start/End: Original strand, 38407450 - 38407558
Alignment:
Q  154 gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 253  Q
    ||||||||||||||| | ||||  ||| |||||||||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  || |||||    
T  38407450 gtcccttaacttaatggtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttc 38407549  T
Q  254 tggtagttt 262  Q
    || ||||||    
T  38407550 tgttagttt 38407558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 41986108 - 41986058
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 252  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||| ||||    
T  41986108 tgtaccaatttggtcccctatgttttgctccgttgctaattttagtccttt 41986058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 6270237 - 6270326
Alignment:
Q  154 gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttt 243  Q
    ||||||||||||||||  ||||   || |||||| ||||| ||||||||||||||| || |||| ||| || ||||| ||||||||||||    
T  6270237 gtcccttaacttaattatttgtactaaattggtcgcctaaatataatttgtaccaaattcgtcctctaagtgttgctccgttactagttt 6270326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 47373612 - 47373657
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 247  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  47373612 tgtaccaatttagtcccctatgttttgctccgttattagttttagt 47373657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 21171331 - 21171375
Alignment:
Q  177 tcaatttggtcccctaactataatttgtaccaatttggtccccta 221  Q
    ||||||||||||||||||| ||| ||||  |||||||||||||||    
T  21171331 tcaatttggtcccctaactttaaattgtctcaatttggtccccta 21171375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 21171566 - 21171522
Alignment:
Q  177 tcaatttggtcccctaactataatttgtaccaatttggtccccta 221  Q
    ||||||||||||||||||| ||| ||||  |||||||||||||||    
T  21171566 tcaatttggtcccctaactttaaattgtctcaatttggtccccta 21171522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 135 - 266
Target Start/End: Complemental strand, 46003596 - 46003465
Alignment:
Q  135 agacttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 234  Q
    ||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| |    
T  46003596 agacttatttaatcatctggtcccttaacttaattgattgtctcaatttggtcccctaactaaaatttgtaccaatttgatcccctttgttttgcttcat 46003497  T
Q  235 tactagttttagttctttctggtagtttctct 266  Q
    ||||||||||||| ||||||||||||||||||    
T  46003496 tactagttttagtcctttctggtagtttctct 46003465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 138 - 267
Target Start/End: Complemental strand, 51663595 - 51663466
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||  |||||    
T  51663595 cttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtagcaatttggtcctctatgttttgctatgttac 51663496  T
Q  238 tagttttagttctttctggtagtttctctc 267  Q
    ||||||||||  |||||| |||||||||||    
T  51663495 tagttttagtcatttctgttagtttctctc 51663466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 138 - 266
Target Start/End: Original strand, 40244627 - 40244756
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttgg-tcccctatgttttgcttcgtta 236  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||    
T  40244627 cttattcaatcatccgatcccttaacttaattgattgtctcaatttggtcccttaactataatttgtaccaatttggttcccctatgttttgctttgtta 40244726  T
Q  237 ctagttttagttctttctggtagtttctct 266  Q
    |||||||||||  |||||| ||||||||||    
T  40244727 ctagttttagtcatttctgttagtttctct 40244756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 51663252 - 51663381
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||| |||||||||||| |||||||||||||||||| | ||| |||||| |||||||||||||||| |||||| ||||||||||||||||||||||||    
T  51663252 cttatttaatcacccggtctcttaacttaattgattgttttaatatggtccactaactataatttgtatcaatttagtcccctatgttttgcttcgttac 51663351  T
Q  238 tagttttagttctttctggtagtttctctc 267  Q
    ||||||||||  ||||||||||||||||||    
T  51663352 tagttttagtcatttctggtagtttctctc 51663381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 138 - 267
Target Start/End: Complemental strand, 20538279 - 20538150
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||| |||||| ||   |||||||||||| ||||||    
T  20538279 cttattcaatcacccggtcctttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttagttatctatgttttgctccgttac 20538180  T
Q  238 tagttttagttctttctggtagtttctctc 267  Q
    ||||||||||  |||||| |||||||||||    
T  20538179 tagttttagtcatttctgttagtttctctc 20538150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 140 - 266
Target Start/End: Original strand, 20537930 - 20538056
Alignment:
Q  140 tattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttacta 239  Q
    |||| ||||| | ||||||||||||||||||||  | |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  20537930 tattgaatcatctggtcccttaacttaattgatattatcaatttgatcccctaactataatttgttccaatttggtcccctatgttttgcttcattacta 20538029  T
Q  240 gttttagttctttctggtagtttctct 266  Q
    |||||||| ||||||  ||||||||||    
T  20538030 gttttagtcctttctattagtttctct 20538056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 139 - 267
Target Start/End: Original strand, 46003251 - 46003379
Alignment:
Q  139 ttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 238  Q
    ||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||| ||||||| || |  |||||     
T  46003251 ttattcaatcacccggtcctttaacttaattgattgttttaatttggtcccctaactataatttgtatcaatttggtcctctatgttctgttctgttaca 46003350  T
Q  239 agttttagttctttctggtagtttctctc 267  Q
    ||||||||| |||| || |||||||||||    
T  46003351 agttttagtcctttttgttagtttctctc 46003379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 139 - 247
Target Start/End: Complemental strand, 40364301 - 40364194
Alignment:
Q  139 ttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 238  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | |||||||||||| | |||||||    
T  40364301 ttattcaatcacttggtcccttaacttaattgattgtttcaatttggtctcctaactataatttgtaccaatttgat-ccctatgttttgttccgttact 40364203  T
Q  239 agttttagt 247  Q
    |||||||||    
T  40364202 agttttagt 40364194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 40364043 - 40364172
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    ||||||| |||||||  ||||||||||||||||||| ||| ||||||||||| ||| ||||||||||| ||||||| |||||| | ||||||| |||||     
T  40364043 cttattcgatcacccaatcccttaacttaattgattatcttaatttggtcccataattataatttgtatcaatttgatcccctgtattttgctccgttat 40364142  T
Q  238 tagttttagttctttctggtagtttctctc 267  Q
    ||||||||||  ||| || |||||||||||    
T  40364143 tagttttagtcatttttgttagtttctctc 40364172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 40244933 - 40244873
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactata 198  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40244933 cttattcaatcaccccgtcccttaacttaattgattgtctcaatttggtcccctaactata 40244873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 46003446 - 46003393
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 255  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  46003446 tgtaccaatttggtcctctatgttttgcttcgttactagttttagtcctttctg 46003393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 20538076 - 20538121
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 247  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||    
T  20538076 tgtaccaatttggtcccctatgttttgctttgttattagttttagt 20538121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 48867536 - 48867469
Alignment:
Q  151 ccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtccc 218  Q
    |||||||||||||||| || ||| ||||||||||||||| ||||||| |  |||  ||||||||||||    
T  48867536 ccggtcccttaacttattttattttctcaatttggtcccttaactattaagtgtgtcaatttggtccc 48867469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 51663399 - 51663444
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 247  Q
    ||||| |||||||||||||||||||||||  ||| |||||||||||    
T  51663399 tgtactaatttggtcccctatgttttgctctgttcctagttttagt 51663444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 138 - 247
Target Start/End: Complemental strand, 5380 - 5271
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  5380 cttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttat 5281  T
Q  238 tagttttagt 247  Q
    ||||||||||    
T  5280 tagttttagt 5271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 138 - 247
Target Start/End: Complemental strand, 2216923 - 2216814
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  2216923 cttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttat 2216824  T
Q  238 tagttttagt 247  Q
    ||||||||||    
T  2216823 tagttttagt 2216814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 133 - 262
Target Start/End: Complemental strand, 24798972 - 24798843
Alignment:
Q  133 ttagacttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttc 232  Q
    |||| |||||||||||||||| |||||||| |||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  24798972 ttaggcttattcaatcacccgatcccttaaattaattgattgtcttaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgcttc 24798873  T
Q  233 gttactagttttagttctttctggtagttt 262  Q
    ||||||||||||||| |||||| |||||||    
T  24798872 gttactagttttagtcctttctagtagttt 24798843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 141 - 266
Target Start/End: Original strand, 11643754 - 11643879
Alignment:
Q  141 attcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactag 240  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||| || ||||||||    
T  11643754 attcaatcacccggtcccttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttggttccctatgttttgttttgttactag 11643853  T
Q  241 ttttagttctttctggtagtttctct 266  Q
    ||||||| || |||| ||||||||||    
T  11643854 ttttagtcctctctgttagtttctct 11643879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 24798627 - 24798756
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||| |  ||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  24798627 cttattcaattattcggtcccttaacttaattggttgtttcaatttggtcccctgactataatttgtaccaatttggtcctctatgttttgcttcgttac 24798726  T
Q  238 tagttttagttctttctggtagtttctctc 267  Q
    ||||||||||  |||||| |||||||||||    
T  24798727 tagttttagtcatttctgttagtttctctc 24798756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 24690357 - 24690449
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgct 230  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  24690357 cttattcaatcacccggtctcttaacttaattgattgtctcaatttggtccccttactataatttgtaccaatttggtcctctatgttttgct 24690449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 133 - 247
Target Start/End: Complemental strand, 11644098 - 11643985
Alignment:
Q  133 ttagacttattcaatcacccggtcccttaacttaattgattgtctcaatttggt-cccctaactataatttgtaccaatttggtcccctatgttttgctt 231  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||    
T  11644098 ttaggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccctaactataatttgtatcaatttggt-ccctatgtttt-ctt 11644001  T
Q  232 cgttactagttttagt 247  Q
     |||||||||||||||    
T  11644000 tgttactagttttagt 11643985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 138 - 266
Target Start/End: Original strand, 18494736 - 18494862
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||| ||||||| |||||    
T  18494736 cttattcaatcacatggtcccttaactttattgattgtctcaatttggt-ccctagctataatttgtaccattttggtcccctatg-tttgctttgttac 18494833  T
Q  238 tagttttagttctttctggtagtttctct 266  Q
    |||||||||| |||| || ||||||||||    
T  18494834 tagttttagtcctttttgttagtttctct 18494862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 266
Target Start/End: Complemental strand, 18495077 - 18494949
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||| |  |||||||||||||||||||| | | |||||| |||| ||||||||||||||| |||||||||||||||| ||||| | |||||     
T  18495077 cttattcaatcatctagtcccttaacttaattgattatattaatttgatcccttaactataatttgtatcaatttggtcccctatattttgatccgttat 18494978  T
Q  238 tagttttagttctttctggtagtttctct 266  Q
    |||||||||||||||||| ||||||||||    
T  18494977 tagttttagttctttctgttagtttctct 18494949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 24690694 - 24690607
Alignment:
Q  135 agacttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctat 222  Q
    ||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||    
T  24690694 agacttattcaatcacccgatcccttaacttaattgattgttttaatttggttccctaactataatttgtaccaatttggtcccctat 24690607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 9954825 - 9954914
Alignment:
Q  154 gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttt 243  Q
    ||||||||||||||||| ||||  ||| |||||||||||| ||||||||||||||| || |||| ||| |||||||| |||||| |||||    
T  9954825 gtcccttaacttaattgtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttaccagttt 9954914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 262
Target Start/End: Complemental strand, 9955698 - 9955590
Alignment:
Q  154 gtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 253  Q
    ||||||||||||||||| |||| |||| |||||||||||| ||||||||||||||| ||  ||| ||| ||||||||  ||||| |||||  || |||||    
T  9955698 gtcccttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcatcctctaagttttgctctgttaccagtttcggtcctttc 9955599  T
Q  254 tggtagttt 262  Q
    || ||||||    
T  9955598 tgttagttt 9955590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 11643898 - 11643943
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 247  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  11643898 tgtaccaatttggtcccctatgttttgctccgttactagttttagt 11643943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 24798822 - 24798770
Alignment:
Q  201 ttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 253  Q
    ||||| |||||||||||||||||||||||| |||| ||||||||||| |||||    
T  24798822 ttgtatcaatttggtcccctatgttttgctccgttcctagttttagtcctttc 24798770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 13800043 - 13800108
Alignment:
Q  153 ggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtccc 218  Q
    |||||||||||||| || ||| ||||| ||||||||| ||||||| | ||||  ||||||||||||    
T  13800043 ggtcccttaacttattttattttctcagtttggtcccttaactattaattgtgtcaatttggtccc 13800108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 18494931 - 18494878
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 255  Q
    |||| |||||||||||||||| ||| |||   ||||||||||||||||||||||    
T  18494931 tgtagcaatttggtcccctatatttcgctctattactagttttagttctttctg 18494878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 24690557 - 24690504
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 255  Q
    ||||||||||||||| |||||||||||||   ||| |||||||||| |||||||    
T  24690557 tgtaccaatttggtctcctatgttttgctctattaatagttttagtcctttctg 24690504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 138 - 294
Target Start/End: Original strand, 21249364 - 21249520
Alignment:
Q  138 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 237  Q
    |||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  21249364 cttattcaatcacctggtcccttaccgtaattgattgtctcaatttggtcccctaattataaattgtaccaatttagtcccctatgttttgcttcgttac 21249463  T
Q  238 tagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatt 294  Q
    |||||||| | ||||||| |||||||||||       |||||||||||||| |||||    
T  21249464 tagttttaatcctttctgttagtttctctcaaaaaaatgttaacttatgtaccaatt 21249520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 21249511 - 21249561
Alignment:
Q  202 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 252  Q
    ||||||||||||||||| |||||||||||  ||||||||||||||| ||||    
T  21249511 tgtaccaatttggtcccttatgttttgctctgttactagttttagtccttt 21249561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 21249679 - 21249629
Alignment:
Q  137 acttattcaatcacccggtcccttaacttaattgattgtctcaatttggtc 187  Q
    ||||||||||||| |  |||||||||||||||||||||||| |||||||||    
T  21249679 acttattcaatcatcttgtcccttaacttaattgattgtcttaatttggtc 21249629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 21249625 - 21249579
Alignment:
Q  220 tatgttttgcttcgttactagttttagttctttctggtagtttctct 266  Q
    ||||||||||| ||||| |||||||||| ||||||| ||||||||||    
T  21249625 tatgttttgctccgttattagttttagtcctttctgttagtttctct 21249579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 15857725 - 15857676
Alignment:
Q  150 cccggtcccttaacttaattgattgtctcaatttggtcccctaactataa 199  Q
    ||||||||||||||||| || ||| ||||| ||||||||| |||||||||    
T  15857725 cccggtcccttaacttattttattttctcagtttggtcccttaactataa 15857676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 262
Target Start/End: Complemental strand, 61151 - 61042
Alignment:
Q  153 ggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 252  Q
    |||||||||||||||||| ||||  ||| |||||||| ||| | ||||||||||||| || |||| ||| |||||||| |||||  |||||  || ||||    
T  61151 ggtcccttaacttaattgtttgtaccaaattggtcccttaaatttaatttgtaccaaattcgtcctctaagttttgctccgttatcagtttaggtccttt 61052  T
Q  253 ctggtagttt 262  Q
    ||| ||||||    
T  61051 ctgttagttt 61042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 108047 - 108111
Alignment:
Q  188 ccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 252  Q
    ||||||| |||||||||| ||||||||||| || ||||||||| | |||||||||||||| ||||    
T  108047 ccctaaccataatttgtatcaatttggtcctctgtgttttgctccattactagttttagtccttt 108111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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