View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13743_low_20 (Length: 211)

Name: NF13743_low_20

Description: NF13743

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13743_low_20

[»] chr2 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 171; E-Value: 5e-92

Query Start/End: Original strand, 15 - 193

Target Start/End: Original strand, 4674775 - 4674953

Alignment:

Q	15	aatactatggctgtaactggtgatgctttaagagatggatcacttggcttgttaaaaccatttgtaacaatgtccactgcatttagagttgcaattgcag	114	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	4674775	aatactatggctgtaactggtgatgctttaagagatggatcacttggcttgttaaaaccatttgtaacaatgtccactgcatttagagttgcaattgcag	4674874	T

Q	115	cacctaaactgtgacctgttatagttatgcttatttcttcattcttgtatttttccactaaccttcttacctcacttaa	193	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	4674875	cacctaaactgtgacctgttatagttatgcttatttcttcattcttgtatttctccaccaaccttcttacctcacttaa	4674953	T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 38; E-Value: 0.000000000001

Query Start/End: Original strand, 87 - 164

Target Start/End: Original strand, 34548233 - 34548310

Alignment:

Q	87	tccactgcatttagagttgcaattgcagcacctaaactgtgacctgttatagttatgcttatttcttcattcttgtat	164	Q
		\|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34548233	tccactgaacttatagttgcaagtgcaccacccaaactgtgtccagttacagttatgctaatttcttcattcttgtat	34548310	T

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