View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13743_low_3 (Length: 527)
Name: NF13743_low_3
Description: NF13743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13743_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 22 - 514
Target Start/End: Complemental strand, 8705285 - 8704795
Alignment:
| Q |
22 |
tagagggtgaaaaagctacaattaatcaaattacatataagagttgcagcaacacgacaacaatcctataaaccaaacaactaacataatcaaaggctcc |
121 |
Q |
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| T |
8705285 |
tagagggtgaaaaagctacaattattcaaattacatataagagttgcaacaacacgacaacaatcatataaattaaacaactattataatcaaaggctcg |
8705186 |
T |
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| Q |
122 |
ctttgtgagatcatgggggaaataaacaaaacagacacaagctttgaacatatggacatagatctcaatccagatcatgaaaagaacaaacatttcatac |
221 |
Q |
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| T |
8705185 |
ctttgtgagatcatgggggaaataaacaaaacagccacaagctttgaacatatggacatagatctcaatccagatcatgaaaagaacaaacatttcatac |
8705086 |
T |
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| Q |
222 |
ataaaaccagattatacatttacctatagttaatccaaacaggcatctggtggaaaatggtagactgtggcggaggttgggcaaagggtaggaagtggct |
321 |
Q |
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| T |
8705085 |
ataaaaacagattatacatttacctatagttaatccaaacaggcatccggcggaaaatggtagagtgtggcggcagttggggaaagggtaggaagtggct |
8704986 |
T |
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| Q |
322 |
gctgctaagggttggaggtttgaaaccctatgtaagttgggnnnnnnnnnatagggcaaggaaaacacacattgttccatatagagctatcaaatggact |
421 |
Q |
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| T |
8704985 |
gctgctaagggttggaggtttgaaaccctatgtaagttggg-ttttttttataaggcaaggaaaacacacattgttccatatagagttgtcaaatggact |
8704887 |
T |
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| Q |
422 |
ggtccgatccagcccgcctcggcccagtgggtcagataatataaatgggttagagtgggacggttcacttgatgactattacttttcgcacct |
514 |
Q |
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| T |
8704886 |
ggtccgatccagcccg-ctcggtccagtgggtcagataatataaatgggttagattgggacggttcactttatgactattacttttcgcacct |
8704795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 297 - 470
Target Start/End: Complemental strand, 8723919 - 8723748
Alignment:
| Q |
297 |
gttgggcaaagggtaggaagtggctgctgct--aagggttggaggtttgaaaccctatgtaagttgggnnnnnnnnnatagggcaaggaaaacacacatt |
394 |
Q |
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| T |
8723919 |
gttgggcaaagggtaggaagtggctgctgctgctagggttgtaggtttgaaaccctatgtgagttggg--ttcttttataaggctaggaaaaaacacaca |
8723822 |
T |
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| Q |
395 |
gttccatatagagctatcaaatggactggtccgatccagcccgcctcggcccagtgggtcagataatataaatggg |
470 |
Q |
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| T |
8723821 |
attcc--atagagctgtcaaatgggctggtccggtccagcctgcctcggcccagttggtcagctcatgtaaatggg |
8723748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 480
Target Start/End: Original strand, 40685780 - 40685830
Alignment:
| Q |
430 |
ccagcccgcctcggcccagtgggtcagataatataaatgggttagagtggg |
480 |
Q |
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| T |
40685780 |
ccagcccgcctcggcccagtgggtaagctcatataaatgggtctgagtggg |
40685830 |
T |
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