View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13743_low_6 (Length: 409)
Name: NF13743_low_6
Description: NF13743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13743_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 116 - 392
Target Start/End: Complemental strand, 629903 - 629627
Alignment:
| Q |
116 |
ccaatcactataaaaagagttcaagaaaattactttgatcgctgatatctttctccacaaaatcctgcaatctagtatcattacgaaaatcattctttgg |
215 |
Q |
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| T |
629903 |
ccaatcactataaaaagagttcaagaaaattactttgatcgctgatatctttctccacaaaatcctgcaatctagtatcattacgaaaatcattctttgg |
629804 |
T |
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| Q |
216 |
aagttgagctaaaacaggagcatgatcaacaaccttaacaacttcaccaacatcctcagtgattacatcaacaaccaaactatcagcaacaacaccagca |
315 |
Q |
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| T |
629803 |
aatttgagctaaaacaggagcatgatcaacaaccttaacaacttcaccaacatcctcagtgattacatcaacaaccaaactatcagcaacaacaccagca |
629704 |
T |
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| Q |
316 |
ccaccttgttgaaaattattggatacaggaacattatgaagccttggtttatgaacaagagcttgtccatgtgttct |
392 |
Q |
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| T |
629703 |
ccaccttgttgaaaattattggaaacaggaacattatgaagccttggtttatgaacaagagcttgtccatgtgttct |
629627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 630024 - 629980
Alignment:
| Q |
6 |
aggagcacagataacctcgagagtaagaaaacttcctgcacttct |
50 |
Q |
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| T |
630024 |
aggaccactgataacctcgagagtaagaaaacttcctgcacttct |
629980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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