View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13743_low_8 (Length: 366)
Name: NF13743_low_8
Description: NF13743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13743_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 24120865 - 24121209
Alignment:
| Q |
19 |
ccatttacctcctctacaccaatactaatgaaaatttcctccacgtcattaagagggaccttcattctttttagatatgaaacagcgtcaatggatgaca |
118 |
Q |
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| T |
24120865 |
ccatttacctcctctacaccaatactaatgaaaatttcctccacgtcattaagagggaccttcattctttctagatatgaaacagcgtcaatggatgaca |
24120964 |
T |
|
| Q |
119 |
ttggagtcacaaccaagtcgtctgtcaccataattgttaatggtcctttgatatatcctccagaaagagaggatttaggatcaacaagtttcgcgggttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24120965 |
ttggagtcacaaccaagtcgtctgtcaccataattgttaatggtcctttgatatatcctccagaaagagaggatttaggatcaacaagtttcgcgggttc |
24121064 |
T |
|
| Q |
219 |
accactatcaaacgtgcaagttaacggacacgttccaattggtagtatttgcttcttgagttcaaaattggcaaaaatacgaggcttagttagtttgttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24121065 |
accactatcaaacgtgcaagttaacggacacgttccaattggtagtatctggttcttgagttcaaaattggcaaaaatacgaggcttagttagtttgttt |
24121164 |
T |
|
| Q |
319 |
ttgagttcctgtgacgttaaacatctctctccattcatctcagtc |
363 |
Q |
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| T |
24121165 |
ttgagttcctgtgacgttaaacatctctctgcattcaactcagtc |
24121209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 24131334 - 24131471
Alignment:
| Q |
22 |
tttacctcctctacaccaatactaatgaaaatttcctccacgtcattaagagggaccttcattctttttagatatgaaacagcgtcaatggatgacattg |
121 |
Q |
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| T |
24131334 |
tttacctccttcacaccaatactaacaacaatttcctccacgtcattaagagggaccttcattctttctagatacgaaacagcatcaatggatgacattg |
24131433 |
T |
|
| Q |
122 |
gagtcacaaccaagtcgtctgtcaccataattgttaat |
159 |
Q |
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| T |
24131434 |
gagtcacaaccaagtcgtctgtcaccataattgttaat |
24131471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 52 - 205
Target Start/End: Original strand, 24137272 - 24137425
Alignment:
| Q |
52 |
atttcctccacgtcattaagagggaccttcattctttttagatatgaaacagcgtcaatggatgacattggagtcacaaccaagtcgtctgtcaccataa |
151 |
Q |
| |
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||||||||||||||| |||| || ||||||||||||| |||||||||| | | ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24137272 |
atttcctccacgtcactaaggggaaccttcattctttcaagatatgaaataccatcaatggatgacattggagtcacaaccaattcgtctgtcaccataa |
24137371 |
T |
|
| Q |
152 |
ttgttaatggtcctttgatatatcctccagaaagagaggatttaggatcaacaa |
205 |
Q |
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| T |
24137372 |
acgttaatggtgctctagcatatcctccagaaataggggatttaggatcaacaa |
24137425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 24153131 - 24153310
Alignment:
| Q |
22 |
tttacctcctctacaccaatactaatgaaaatttcctccacgtcattaagagggaccttcattctttttagatatgaaacagcgtcaatggatgacattg |
121 |
Q |
| |
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|||||||||| ||||||||||| |||| ||||||| || |||| ||| || ||||||| | ||| ||||||||||||||| ||||| ||||| |||| |
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| T |
24153131 |
tttacctccttaacaccaatacttatgaccatttccttcaaatcatcaaggggtaccttcaatttttctagatatgaaacagcatcaatagatgaaattg |
24153230 |
T |
|
| Q |
122 |
gagtcacaaccaagtcgtctgtcaccataattgttaatggtcctttgatatatcctccagaaagagaggatttaggatca |
201 |
Q |
| |
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| T |
24153231 |
gagtcacaaccaagtcgtctgtcaccaaaatcgttaaaggtcctctgacatatcctccagaaagagtgggttttggatca |
24153310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 34 - 205
Target Start/End: Original strand, 24158403 - 24158574
Alignment:
| Q |
34 |
acaccaatactaatgaaaatttcctccacgtcattaagagggaccttcattctttttagatatgaaacagcgtcaatggatgacattggagtcacaacca |
133 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||| | ||| |||||||||| ||||||||||||| | || || ||||| ||||||||| |||||| |
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| T |
24158403 |
acaccaatactaatgacaatttcctccaaatcaacaagggagacattcattctttctagatatgaaacaccatcgatagatgaaattggagtcgcaacca |
24158502 |
T |
|
| Q |
134 |
agtcgtctgtcaccataattgttaatggtcctttgatatatcctccagaaagagaggatttaggatcaacaa |
205 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| | | |||||||||||||| || | |||| |||||||||| |
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|
| T |
24158503 |
agtcgtctgtcaccatagttgttaacggtcctctaacatatcctccagaaacagggaatttgggatcaacaa |
24158574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 52 - 202
Target Start/End: Original strand, 24145008 - 24145158
Alignment:
| Q |
52 |
atttcctccacgtcattaagagggaccttcattctttttagatatgaaacagcgtcaatggatgacattggagtcacaaccaagtcgtctgtcaccataa |
151 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| |||||||||| | | ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24145008 |
atttcctccacgtcattaagtgagaccttcattctttcaagatatgaaataccatcaatggatgacattggagtcacaaccaattcgtctgtcaccataa |
24145107 |
T |
|
| Q |
152 |
ttgttaatggtcctttgatatatcctccagaaagagaggatttaggatcaa |
202 |
Q |
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||||||| | || |||||| ||||||| || |||||||||||||| |
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| T |
24145108 |
acgttaatgatgctccagcatatccaccagaaataggggatttaggatcaa |
24145158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 52 - 202
Target Start/End: Original strand, 24125705 - 24125855
Alignment:
| Q |
52 |
atttcctccacgtcattaagagggaccttcattctttttagatatgaaacagcgtcaatggatgacattggagtcacaaccaagtcgtctgtcaccataa |
151 |
Q |
| |
|
||||||||||||||| |||| || ||||||||||||| |||||||||| | | ||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
24125705 |
atttcctccacgtcactaaggggaaccttcattctttcaagatatgaaataccatcaatggatgacattggagtcacaatcaagtcatctgtcaccataa |
24125804 |
T |
|
| Q |
152 |
ttgttaatggtcctttgatatatcctccagaaagagaggatttaggatcaa |
202 |
Q |
| |
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||||||| | || |||||| ||||||| || |||||||||||||| |
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| T |
24125805 |
acgttaatgatgctccagcatatccaccagaaataggggatttaggatcaa |
24125855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 165
Target Start/End: Original strand, 24149991 - 24150103
Alignment:
| Q |
53 |
tttcctccacgtcattaagagggaccttcattctttttagatatgaaacagcgtcaatggatgacattggagtcacaaccaagtcgtctgtcaccataat |
152 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||||| || |||||||||| | || || |||||||||||||||||||||||||| |||||||| | |
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| T |
24149991 |
tttcttccacatcattaagggggaccttcattctttctaaatatgaaacaccagatattgacgacattggagtcacaaccaagtcgtcggtcaccatgaa |
24150090 |
T |
|
| Q |
153 |
tgttaatggtcct |
165 |
Q |
| |
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||||||||||||| |
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| T |
24150091 |
tgttaatggtcct |
24150103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 202
Target Start/End: Complemental strand, 15381480 - 15381331
Alignment:
| Q |
53 |
tttcctccacgtcattaagagggaccttcattctttttagatatgaaacagcgtcaatggatgacattggagtcacaaccaagtcgtctgtcaccataat |
152 |
Q |
| |
|
|||||||||| ||||||| | ||||||||||||| |||||| |||||| | |||||||||| | || ||||| |||| |||||||||||| || | |
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| T |
15381480 |
tttcctccacatcattaaaggcaaccttcattctttctagataggaaacaacagcaatggatgataacggggtcactaccatgtcgtctgtcacgatgaa |
15381381 |
T |
|
| Q |
153 |
tgttaatggtcctttgatatatcctccagaaagagaggatttaggatcaa |
202 |
Q |
| |
|
|| | |||||||||| |||||||||||||| || |||||||||||||| |
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|
| T |
15381380 |
ggtaatcggtcctttgacatatcctccagaaataggggatttaggatcaa |
15381331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 10990081 - 10990047
Alignment:
| Q |
115 |
gacattggagtcacaaccaagtcgtctgtcaccat |
149 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| |
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| T |
10990081 |
gacattggagtcacaaccaagtcatctgtcaccat |
10990047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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