View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13744_high_2 (Length: 587)

Name: NF13744_high_2
Description: NF13744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13744_high_2
NF13744_high_2
[»] chr7 (2 HSPs)
chr7 (17-587)||(48520189-48520759)
chr7 (17-103)||(39702856-39702942)
[»] chr1 (5 HSPs)
chr1 (17-124)||(46757737-46757844)
chr1 (17-124)||(18505001-18505108)
chr1 (17-103)||(7487119-7487205)
chr1 (21-134)||(46352145-46352257)
chr1 (79-128)||(19193506-19193555)
[»] chr6 (8 HSPs)
chr6 (17-124)||(18767444-18767550)
chr6 (17-124)||(20025459-20025566)
chr6 (79-134)||(21683490-21683545)
chr6 (220-286)||(21390405-21390471)
chr6 (17-102)||(18715534-18715619)
chr6 (79-134)||(20881682-20881737)
chr6 (17-103)||(31569553-31569639)
chr6 (17-61)||(14463752-14463796)
[»] scaffold0054 (2 HSPs)
scaffold0054 (81-134)||(50002-50055)
scaffold0054 (29-130)||(28595-28696)
[»] chr5 (2 HSPs)
chr5 (79-134)||(22545499-22545554)
chr5 (80-134)||(32726623-32726677)
[»] chr3 (1 HSPs)
chr3 (29-123)||(54076934-54077028)
[»] chr8 (2 HSPs)
chr8 (17-134)||(16046823-16046940)
chr8 (17-134)||(22932304-22932421)
[»] chr2 (1 HSPs)
chr2 (17-134)||(25417343-25417460)
[»] scaffold0041 (1 HSPs)
scaffold0041 (20-107)||(31984-32071)
[»] chr4 (2 HSPs)
chr4 (17-128)||(19111800-19111911)
chr4 (17-102)||(52374517-52374602)
[»] scaffold0214 (1 HSPs)
scaffold0214 (17-134)||(21972-22089)


Alignment Details
Target: chr7 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 17 - 587
Target Start/End: Original strand, 48520189 - 48520759
Alignment:
Q  17 catactcatctatctatgaaagattaatatggatgaaacatgagtaaagtttacgaaggtgtgtttgatgaagacattaaatctttctcaaaactaacac 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  48520189 catactcatctatctatggaagattaatatggatgaaacatgagtgaagtttacggaggtgtgtttgatgaaaacattaaatctttctcaaaactaacac 48520288  T
Q  117 aatttacagaaaccagtaaatgctcacgtgcatgaaacatgagtgaatgttcatttgatattatcaatcaaagaccacgaaactcact--agcaaaaatt 214  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||   ||||||||||    
T  48520289 aatttgcagaaaccagtaaatgctcacgtgcatgaaacatgagtgaatattcatttgatattatcaatcaaagaccaggaaactcacataagcaaaaatt 48520388  T
Q  215 agttgagctttttgtattcctatcataagcatgtcatgtatatgagctccaagtcaagtaaaattttcttctgcacgtattttccactacaacgatgtga 314  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48520389 agttgagctttttgtattcgtatcataagcatgtcatgtatatgagctccaactcaagtaaaattttcttctgcacgtattttccactacaacgatgtga 48520488  T
Q  315 aatattctacttctataaccagctcattttgttgtagtccctgcatccacccataaaacaatgaaagaaaataacnnnnnnnttgatagaatgaaggaaa 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  48520489 aatattctacttctataaccagctcattttgttgtagtccctgcatccacccataaaacaatgaaagaaaataac-aaaaaattgatagaatgaaggaaa 48520587  T
Q  415 caaagatggagcttgtatacccttgatgataccacaagtcacaacaactatagacgtagttgtaacagtgttggggggttaaccaccatgacttccttcc 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48520588 caaagatggagcttgtatacccttgatgataccacaagtcacaacaactatagacgtagttgtaacagtgttgggggg-taaccaccatgacttccttcc 48520686  T
Q  515 tattttcttactttatgtatccaagtccaatgccattgacttccaaaacagctcctccaagtggttccctctt 587  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48520687 tattttcttactttatgtatccaagtccaatgccattgccttccaaaacagctcctccaagtggttccctctt 48520759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 39702942 - 39702856
Alignment:
Q  17 catactcatctatctatgaaagattaatatggatgaaacatgagtaaagtttacgaaggtgtgtttgatgaagacattaaatctttc 103  Q
    |||||||||||||||||| | ||| |||||  ||||||||||||| |  |||| |  |||| ||||||||||||| |||||||||||    
T  39702942 catactcatctatctatggaggatgaatatacatgaaacatgagtgacatttatgggggtgggtttgatgaagactttaaatctttc 39702856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 46757844 - 46757737
Alignment:
Q  17 catactcatctatctatgaaagattaatatggatgaaacatgagtaaagtttacgaaggtgtgtttgatgaagacattaaatctttctcaaaactaacac 116  Q
    |||||||||||||||| | ||||| |||||| ||||||||| ||| |  ||||||  |||  |||||||||||||||||||||||||||| |||||||||    
T  46757844 catactcatctatctagggaagatgaatatgcatgaaacataagtcacatttacgggggtaggtttgatgaagacattaaatctttctcataactaacac 46757745  T
Q  117 aatttaca 124  Q
    ||||||||    
T  46757744 aatttaca 46757737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 18505001 - 18505108
Alignment:
Q  17 catactcatctatctatgaaagattaatatggatgaaacatgagtaaagtttacgaaggtgtgtttgatgaagacattaaatctttctcaaaactaacac 116  Q
    |||||||||||||||||| | ||| |||||| || |||||||||| |  |||| |  |||| ||||||||||||||||||||||||||||   |||||||    
T  18505001 catactcatctatctatggaggatgaatatgcattaaacatgagtgacatttatgggggtgggtttgatgaagacattaaatctttctcatctctaacac 18505100  T
Q  117 aatttaca 124  Q
    ||||||||    
T  18505101 aatttaca 18505108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 7487205 - 7487119
Alignment:
Q  17 catactcatctatctatgaaagattaatatggatgaaacatgagtaaagtttacgaaggtgtgtttgatgaagacattaaatctttc 103  Q
    |||||||||||||||||| | ||| |||||  ||||||||||||| |  |||| |  |||| ||||||||||||| |||||||||||    
T  7487205 catactcatctatctatggaggatgaatatacatgaaacatgagtgacatttatgggggtgggtttgatgaagactttaaatctttc 7487119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 46352145 - 46352257
Alignment:
Q  21 ctcatctatctatgaaagattaatatggatgaaacatgagtaaagtttacgaaggtgtgtttgatgaagacattaaatctttctcaaaactaacacaatt 120  Q
    |||||||||||||| | ||| |||||| || |||||||||  |  |||| |  |||| | ||||||||||||| ||||| ||||||   |||||||||||    
T  46352145 ctcatctatctatggaggatgaatatgcataaaacatgagagacatttatgggggtgggattgatgaagacat-aaatcattctcagcgctaacacaatt 46352243  T
Q  121 tacagaaaccagta 134  Q
    ||||||||||||||    
T  46352244 tacagaaaccagta 46352257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 19193555 - 19193506
Alignment:
Q  79 gtttgatgaagacattaaatctttctcaaaactaacacaatttacagaaa 128  Q
    ||||||||||||||||||||||||| |    |||||||||||||||||||    
T  19193555 gtttgatgaagacattaaatctttcccttcgctaacacaatttacagaaa 19193506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 18767550 - 18767444
Alignment:
Q  17 catactcatctatctatgaaagattaatatggatgaaacatgagtaaagtttacgaaggtgtgtttgatgaagacattaaatctttctcaaaactaacac 116  Q
    |||||||||||||||| |  |||| |||||| ||||||||||||| |  ||||||  |||| |||||||||||||||||||| |||||||   |||||||    
T  18767550 catactcatctatctagggtagatgaatatgcatgaaacatgagtcacatttacgg-ggtgggtttgatgaagacattaaatttttctcatctctaacac 18767452  T
Q  117 aatttaca 124  Q
    ||||||||    
T  18767451 aatttaca 18767444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 20025566 - 20025459
Alignment:
Q  17 catactcatctatctatgaaagattaatatggatgaaacatgagtaaagtttacgaaggtgtgtttgatgaagacattaaatctttctcaaaactaacac 116  Q
    |||||||||||||||||||| ||| |||||  ||| ||||||||| |  |||| |   ||| |||||||||||||||||||||||||| |   |||||||    
T  20025566 catactcatctatctatgaaggatgaatatacatggaacatgagtgacatttatgggtgtgggtttgatgaagacattaaatctttcttatctctaacac 20025467  T
Q  117 aatttaca 124  Q
    ||||||||    
T  20025466 aatttaca 20025459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 21683490 - 21683545
Alignment:
Q  79 gtttgatgaagacattaaatctttctcaaaactaacacaatttacagaaaccagta 134  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||| |||||    
T  21683490 gtttgatgaagacattaaatctttctcatcgctaacacaatttacagaaagcagta 21683545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 220 - 286
Target Start/End: Complemental strand, 21390471 - 21390405
Alignment:
Q  220 agctttttgtattcctatcataagcatgtcatgtatatgagctccaagtcaagtaaaattttcttct 286  Q
    |||||||||||| | |||||||| ||||||||||  ||||||||||| |||||||||||||| ||||    
T  21390471 agctttttgtatacttatcataaacatgtcatgtgcatgagctccaaatcaagtaaaattttgttct 21390405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 18715534 - 18715619
Alignment:
Q  17 catactcatctatctatgaaagattaatatggatgaaacatgagtaaagtttacgaaggtgtgtttgatgaagacattaaatcttt 102  Q
    |||||||||||||||||| | ||| |||||| ||||||||||||| | | ||| || |||  |||||||||||| |||||||||||    
T  18715534 catactcatctatctatggaggatgaatatgcatgaaacatgagtgatggttatgagggttggtttgatgaagatattaaatcttt 18715619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 20881737 - 20881682
Alignment:
Q  79 gtttgatgaagacattaaatctttctcaaaactaacacaatttacagaaaccagta 134  Q
    |||||||||||| |||||||||||| |||  ||||||||||||||||||| |||||    
T  20881737 gtttgatgaagatattaaatctttcccaacgctaacacaatttacagaaagcagta 20881682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 31569553 - 31569639
Alignment:
Q  17 catactcatctatctatgaaagattaatatggatgaaacatgagtaaagtttacgaaggtgtgtttgatgaagacattaaatctttc 103  Q
    ||||||||| |||||||||||||| |||||  ||| ||||||||| |  |||| |  |||| ||||||||||||| |||||| ||||    
T  31569553 catactcatttatctatgaaagatgaatatacatggaacatgagtgacatttatgggggtgggtttgatgaagactttaaatatttc 31569639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 14463752 - 14463796
Alignment:
Q  17 catactcatctatctatgaaagattaatatggatgaaacatgagt 61  Q
    |||||||||||||||||| | ||| |||||| |||||||||||||    
T  14463752 catactcatctatctatggaggatgaatatgcatgaaacatgagt 14463796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 50002 - 50055
Alignment:
Q  81 ttgatgaagacattaaatctttctcaaaactaacacaatttacagaaaccagta 134  Q
    ||||||||||||||||||| |||||||  |||||||||||||||||||||||||    
T  50002 ttgatgaagacattaaatcattctcaacgctaacacaatttacagaaaccagta 50055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 28696 - 28595
Alignment:
Q  29 tctatgaaagattaatatggatgaaacatgagtaaagtttacgaaggtgtgtttgatgaagacattaaatctttctcaaaactaacacaatttacagaaa 128  Q
    |||||||||||| ||| || ||||||||||||| || ||||||  |||| |||| | |||||||||||||||||  ||   ||||||||||||||| |||    
T  28696 tctatgaaagatgaatctgcatgaaacatgagtgaaatttacgggggtgagtttcacgaagacattaaatcttttccactgctaacacaatttacaaaaa 28597  T
Q  129 cc 130  Q
    ||    
T  28596 cc 28595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 22545554 - 22545499
Alignment:
Q  79 gtttgatgaagacattaaatctttctcaaaactaacacaatttacagaaaccagta 134  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||||||| |||||    
T  22545554 gtttgatgaagacattaaatctttcccaacgctaacacaatttacagaaagcagta 22545499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 32726677 - 32726623
Alignment:
Q  80 tttgatgaagacattaaatctttctcaaaactaacacaatttacagaaaccagta 134  Q
    |||||||||| ||||||||||||||||   ||||||||||||| |||||||||||    
T  32726677 tttgatgaagccattaaatctttctcatcgctaacacaatttaaagaaaccagta 32726623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 54076934 - 54077028
Alignment:
Q  29 tctatgaaagattaatatggatgaaacatgagtaaagtttacgaaggtgtgtttgatgaagacattaaatctttctcaaaactaacacaatttac 123  Q
    |||||| ||||| |||||| |||||||||||||||| | ||||  |||| |||| | |||||||||||||||||| ||   ||||||||||||||    
T  54076934 tctatggaagatgaatatgcatgaaacatgagtaaaatatacgggggtgggtttcacgaagacattaaatctttcccattgctaacacaatttac 54077028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 16046940 - 16046823
Alignment:
Q  17 catactcatctatctatgaaagattaatatggatgaaacatgagtaaagtttacgaaggtgtgtttgatgaagacattaaatctttctcaaaactaacac 116  Q
    ||||| |||||||||||| | ||| ||||   ||||||||||||| |  |||| ||||||| ||||||||||||| ||||||||||| ||    ||| ||    
T  16046940 catacccatctatctatggaggatgaatacacatgaaacatgagttacatttatgaaggtgggtttgatgaagactttaaatctttcccatcgttaaaac 16046841  T
Q  117 aatttacagaaaccagta 134  Q
    ||||||||||||| ||||    
T  16046840 aatttacagaaactagta 16046823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 22932304 - 22932421
Alignment:
Q  17 catactcatctatctatgaaagattaatatggatgaaacatgagtaaagtttacgaaggtgtgtttgatgaagacattaaatctttctcaaaactaacac 116  Q
    |||||||||||||||||  | ||| |||||| ||||||||||||  |   ||| |  |||| |||||||||||||||||||| |||| ||   |||||||    
T  22932304 catactcatctatctattgaggatgaatatgcatgaaacatgagagacagttatgggggtgggtttgatgaagacattaaatatttcccagcgctaacac 22932403  T
Q  117 aatttacagaaaccagta 134  Q
     |||||||||||||||||    
T  22932404 gatttacagaaaccagta 22932421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 25417343 - 25417460
Alignment:
Q  17 catactcatctatctatgaaagattaatatggatgaaacatgagtaaagtttacgaaggtgtgtttgatgaagacattaaatctttctcaaaactaacac 116  Q
    |||||||||||||||||| | ||| |||||| ||||||||||||  |   ||| |  |||| |||||||||||||||||||| |||| ||   ||||||     
T  25417343 catactcatctatctatggaggatgaatatgcatgaaacatgagagacagttatgggggtgggtttgatgaagacattaaatttttcccagcgctaacat 25417442  T
Q  117 aatttacagaaaccagta 134  Q
     |||||||||||||||||    
T  25417443 gatttacagaaaccagta 25417460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 32071 - 31984
Alignment:
Q  20 actcatctatctatgaaagattaatatggatgaaacatgagtaaagtttacgaaggtgtgtttgatgaagacattaaatctttctcaa 107  Q
    ||||||||||||||| | ||| |||||| ||||||||||||  |   ||| |  |||| |||||||||||||||||||||||||||||    
T  32071 actcatctatctatggaggatgaatatgcatgaaacatgagagatagttatgggggtgggtttgatgaagacattaaatctttctcaa 31984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 19111911 - 19111800
Alignment:
Q  17 catactcatctatctatgaaagattaatatggatgaaacatgagtaaagtttacgaaggtgtgtttgatgaagacattaaatctttctcaaaactaacac 116  Q
    |||||||||||||||||| | ||| |||||| ||||||||||||| |   ||| || |||   ||||||||||| ||||||||||| |||   |||||||    
T  19111911 catactcatctatctatggaggatgaatatgcatgaaacatgagtgacagttatgagggttgatttgatgaagatattaaatctttttcatcgctaacac 19111812  T
Q  117 aatttacagaaa 128  Q
    | ||||||||||    
T  19111811 attttacagaaa 19111800  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 52374517 - 52374602
Alignment:
Q  17 catactcatctatctatgaaagattaatatggatgaaacatgagtaaagtttacgaaggtgtgtttgatgaagacattaaatcttt 102  Q
    |||||||||||||||||| | ||  |||||| ||||||||||||| |   ||| || |||  |||||||||||| |||||||||||    
T  52374517 catactcatctatctatggaggacgaatatgcatgaaacatgagtgacagttatgagggttggtttgatgaagatattaaatcttt 52374602  T

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Target: scaffold0214 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 21972 - 22089
Alignment:
Q  17 catactcatctatctatgaaagattaatatggatgaaacatgagtaaagtttacgaaggtgtgtttgatgaagacattaaatctttctcaaaactaacac 116  Q
    |||||||||||||||||||| ||| |||||| |||||||| |||  |   ||| |  | |  ||||||||||||||||||||||||  ||   |||||||    
T  21972 catactcatctatctatgaaggatgaatatgcatgaaacaagagagatagttatggggctaggtttgatgaagacattaaatcttttccagcgctaacac 22071  T
Q  117 aatttacagaaaccagta 134  Q
     |||||||||||||||||    
T  22072 gatttacagaaaccagta 22089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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