View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13744_high_3 (Length: 551)
Name: NF13744_high_3
Description: NF13744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13744_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Complemental strand, 12532310 - 12531780
Alignment:
| Q |
1 |
aaacaaacaatgaagcaaagttttggacacaatttaattcataaagcagaggacagcatacaccacacaaattaggcacatccttgatggacaaggccaa |
100 |
Q |
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| T |
12532310 |
aaacaaacaatgaagcaaagttttggagacaatttaattcataaagcagaggacagcatacaccacacaaattaggcacatccttgatggacaaggccaa |
12532211 |
T |
|
| Q |
101 |
actatttt--cccatctatgaagcaacgacacacacaaaactaacacataaacccccataataattaaacgatagaagtgttttaatgtatgtagcaaca |
198 |
Q |
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| T |
12532210 |
actattttttcccatctacgaagcaacgacacacacaaaactaacacataaacccccataataattaaacgatagaagtgttttaatgtatgtagcaaca |
12532111 |
T |
|
| Q |
199 |
catgttaatctcatacaagtgcagacatgagttatcaccaagatatgtcaggcataccttcaatttgaataatcaaagcgtcccaattagtattacatca |
298 |
Q |
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| T |
12532110 |
catgttaatctcatacaagtgcagacatgagttatcaccaagatatgtcaagcataccttcaatttgaataatcaaagcatccctattagtattacatca |
12532011 |
T |
|
| Q |
299 |
atttcaattattttcatgaagatgagcatcaaagggaatatgaaaaac-ttcacaaaatttgtaaactacttttcataatcacnnnnnnnnagatttatt |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||| ||||| ||||||||| |
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| T |
12532010 |
atttcaattattttcatgaagatgagcatcaaagggaatatgaaaaactttaacaaaatttgtaaaccacttttcttaatc----gtttttagatttatt |
12531915 |
T |
|
| Q |
398 |
tcataatcatgttcatttaatctataactgactgttatttagaaatactgaatcttgaaaagtgttatccattcatcttatatgccaaatcaaggcaatg |
497 |
Q |
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| T |
12531914 |
tcataatcatgttcatttaatctataactgactgttatttagaaatactgaatcttgaaaagtgttatccattcatcttatatgccaaatcaaggcaatg |
12531815 |
T |
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| Q |
498 |
cataactataatagtactacgaaattgtagatcca |
532 |
Q |
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| T |
12531814 |
cataactacaatagtactacgaaattgtagatcca |
12531780 |
T |
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