View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13744_high_9 (Length: 361)

Name: NF13744_high_9
Description: NF13744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13744_high_9
NF13744_high_9
[»] chr1 (1 HSPs)
chr1 (15-361)||(30618195-30618539)
[»] chr8 (2 HSPs)
chr8 (87-126)||(9942834-9942873)
chr8 (148-200)||(35620058-35620110)
[»] chr2 (4 HSPs)
chr2 (141-195)||(13486830-13486884)
chr2 (151-201)||(31482372-31482422)
chr2 (92-129)||(13486904-13486941)
chr2 (153-201)||(13133064-13133112)
[»] chr6 (1 HSPs)
chr6 (148-195)||(9606869-9606916)
[»] chr7 (1 HSPs)
chr7 (151-199)||(10293300-10293348)
[»] chr5 (2 HSPs)
chr5 (153-201)||(26498345-26498393)
chr5 (149-193)||(26619406-26619450)
[»] chr4 (2 HSPs)
chr4 (141-201)||(14041283-14041343)
chr4 (151-195)||(35268211-35268255)
[»] chr3 (3 HSPs)
chr3 (153-201)||(8838504-8838552)
chr3 (151-195)||(19432294-19432337)
chr3 (153-201)||(55312440-55312488)


Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 15 - 361
Target Start/End: Complemental strand, 30618539 - 30618195
Alignment:
Q  15 accaagaaccttgaaattgattgtctcgcattgtgagagaaaaattgcaagccaagttcttgaagctccctccagtctcctccaaagatcaagttgcaga 114  Q
    ||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30618539 accaagaacctagaaattgattgtc--gcattgtgagagaaaaattgcaagccaagttcttgaagctccctccagtctcctccaaagatcaagttgcaga 30618442  T
Q  115 ctttttcaccaagtctcatacccttaaatcttctactatccaagttggggatggttgacatttaccaacctccaacttgtgaggggaaaactgatagaat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30618441 ctttttcaccaagtctcatacccttaaatcttctactatccaagttggggatggttgacatttaccaacctccaacttgtgaggggaaaactgatagaat 30618342  T
Q  215 tagttagttaataacaattacttgcatagcaaataatctgtcttgttagttagaagttagtttctggtgcttgtttcacaaagacatagtagttagcata 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30618341 tagttagttaataacaattacttgcatagcaaataatctgtcttgttagttagaagttagtttctggtgcttgtttcacatagacatagtagttagcata 30618242  T
Q  315 tggaactgctcaattaacaaattctcactcttttattaaatttctct 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30618241 tggaactgctcaattaacaaattctcactcttttattaaatttctct 30618195  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 9942873 - 9942834
Alignment:
Q  87 cagtctcctccaaagatcaagttgcagactttttcaccaa 126  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  9942873 cagtctcatccaaagatcaagttgcagactttttcaccaa 9942834  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 35620058 - 35620110
Alignment:
Q  148 tactatccaagttggggatggttgacatttaccaacctccaacttgtgagggg 200  Q
    |||||||||||||||||||| | || || ||||||||| ||||||||| ||||    
T  35620058 tactatccaagttggggatgttagatatctaccaaccttcaacttgtgggggg 35620110  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 13486884 - 13486830
Alignment:
Q  141 aatcttctactatccaagttggggatggttgacatttaccaacctccaacttgtg 195  Q
    |||||||| |||||||||||||||||| | || || |||||||||||||||||||    
T  13486884 aatcttcttctatccaagttggggatgttggatatctaccaacctccaacttgtg 13486830  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 31482422 - 31482372
Alignment:
Q  151 tatccaagttggggatggttgacatttaccaacctccaacttgtgagggga 201  Q
    ||||||||||||| || || ||||||||||| ||||||||||||| |||||    
T  31482422 tatccaagttgggtatagtagacatttaccaccctccaacttgtgggggga 31482372  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 13486941 - 13486904
Alignment:
Q  92 tcctccaaagatcaagttgcagactttttcaccaagtc 129  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  13486941 tcctctaaagatcaagttgcagacttcttcaccaagtc 13486904  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 13133064 - 13133112
Alignment:
Q  153 tccaagttggggatggttgacatttaccaacctccaacttgtgagggga 201  Q
    ||||||||||||||| | ||||| ||||| ||||||||||||| |||||    
T  13133064 tccaagttggggatgttagacatctaccaccctccaacttgtgggggga 13133112  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 9606916 - 9606869
Alignment:
Q  148 tactatccaagttggggatggttgacatttaccaacctccaacttgtg 195  Q
    |||||||||||||||| ||| ||||||||| ||| |||||||||||||    
T  9606916 tactatccaagttgggaatgattgacatttgccatcctccaacttgtg 9606869  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 10293300 - 10293348
Alignment:
Q  151 tatccaagttggggatggttgacatttaccaacctccaacttgtgaggg 199  Q
    |||||||||||||| || | || || |||||||||||||||||||||||    
T  10293300 tatccaagttggggttgttggatatataccaacctccaacttgtgaggg 10293348  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 26498345 - 26498393
Alignment:
Q  153 tccaagttggggatggttgacatttaccaacctccaacttgtgagggga 201  Q
    ||||||||||||||| | ||||| ||||| ||||||||||||| |||||    
T  26498345 tccaagttggggatgttagacatctaccaccctccaacttgtgggggga 26498393  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 26619450 - 26619406
Alignment:
Q  149 actatccaagttggggatggttgacatttaccaacctccaacttg 193  Q
    |||||||||||||| |||| ||||||| || ||||||||||||||    
T  26619450 actatccaagttggagatgattgacatctatcaacctccaacttg 26619406  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 14041283 - 14041343
Alignment:
Q  141 aatcttctactatccaagttggggatggttgacatttaccaacctccaacttgtgagggga 201  Q
    ||||||||||| |||||||||||  || | ||||| |||||||||||| |||||| |||||    
T  14041283 aatcttctactttccaagttgggattgttagacatctaccaacctccatcttgtgggggga 14041343  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 35268255 - 35268211
Alignment:
Q  151 tatccaagttggggatggttgacatttaccaacctccaacttgtg 195  Q
    |||||||||||||  |||| ||||||| |||||||||||||||||    
T  35268255 tatccaagttgggattggtagacatttgccaacctccaacttgtg 35268211  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 8838504 - 8838552
Alignment:
Q  153 tccaagttggggatggttgacatttaccaacctccaacttgtgagggga 201  Q
    ||||||||||||||| | || |||||||| ||||||||||||| |||||    
T  8838504 tccaagttggggatgttagatatttaccaccctccaacttgtgggggga 8838552  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 19432294 - 19432337
Alignment:
Q  151 tatccaagttggggatggttgacatttaccaacctccaacttgtg 195  Q
    |||||||||||||  |||||||||||||||||||| |||||||||    
T  19432294 tatccaagttgggattggttgacatttaccaacct-caacttgtg 19432337  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 55312440 - 55312488
Alignment:
Q  153 tccaagttggggatggttgacatttaccaacctccaacttgtgagggga 201  Q
    ||||||||||||||| | ||||| ||||| ||||||||||||| |||||    
T  55312440 tccaagttggggatgttagacatctaccaccctccaacttgtgggggga 55312488  T

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