View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13744_low_10 (Length: 345)
Name: NF13744_low_10
Description: NF13744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13744_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 127838 - 127528
Alignment:
| Q |
18 |
aagtataaaaaataggcgaagtataaaaaaggaccagggatgagtcctaaaaccttgcaaccagagcatactgggatatgatttaacactttctcaaatc |
117 |
Q |
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| T |
127838 |
aagtataaaaaataggcgaagtataaaaaaggaccagggatgagtcctaaaaccttgcaaccagagcatactgggatatgatttaacacattctcaaatc |
127739 |
T |
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| Q |
118 |
gtctgcagatatcacatgatttacgttgctccttagaaatatctgatcttggcaaagaaaaatctgaatatttctctgacgaagctcttgtgacagcaac |
217 |
Q |
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| T |
127738 |
gtctgcagatatcacatgatttacgttgctccttagaaatatctgatcttggcaaagaaaaatctgaatatttctctgacgaagctcttgtgacagcaac |
127639 |
T |
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| Q |
218 |
tctagaaagagtctctttggcacggggcattgactgagaacatggaccagtccgcccacttaaggcatccaacttcaatgaattctgaaaaatcatattt |
317 |
Q |
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| T |
127638 |
tctagaaagagtctttttggcacggggcattggctgagaacatggaccagtccgcccacttaaggcatccaacttcaatgaattctgaaaaatcatattt |
127539 |
T |
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| Q |
318 |
tactgtcaata |
328 |
Q |
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||||||||||| |
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| T |
127538 |
tactgtcaata |
127528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 44 - 328
Target Start/End: Complemental strand, 33060169 - 33059885
Alignment:
| Q |
44 |
aaaaggaccagggatgagtcctaaaaccttgcaaccagagcatactgggatatgatttaacactttctcaaatcgtctgcagatatcacatgatttacgt |
143 |
Q |
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| T |
33060169 |
aaaaggaccagggatgagtcctaaaaccttgcaaccagagcagactaggataggatttaacacattctcaaatcgtctgcagatatcacatgatttacgt |
33060070 |
T |
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| Q |
144 |
tgctccttagaaatatctgatcttggcaaagaaaaatctgaatatttctctgacgaagctcttgtgacagcaactctagaaagagtctctttggcacggg |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33060069 |
tgctccttagaaatatctgatcttggcaaagaaaaatccgaatatttctctgacgaagctctagtgacagcaactctagaaagagtctctttggcacggg |
33059970 |
T |
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| Q |
244 |
gcattgactgagaacatggaccagtccgcccacttaaggcatccaacttcaatgaattctgaaaaatcatattttactgtcaata |
328 |
Q |
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|||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33059969 |
gcattggctgagaacatggaccagtccgcccacataaagcatccaacttcaatgaattctgaaaaatcatattttactgtcaata |
33059885 |
T |
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