View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13744_low_11 (Length: 320)

Name: NF13744_low_11
Description: NF13744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13744_low_11
NF13744_low_11
[»] chr5 (2 HSPs)
chr5 (9-191)||(36224364-36224546)
chr5 (188-303)||(36225005-36225117)
[»] chr3 (2 HSPs)
chr3 (9-303)||(39427592-39427865)
chr3 (111-164)||(37462537-37462590)
[»] chr2 (24 HSPs)
chr2 (9-160)||(8579532-8579677)
chr2 (99-161)||(7611975-7612037)
chr2 (99-160)||(9364664-9364725)
chr2 (103-160)||(17566128-17566185)
chr2 (99-160)||(9061186-9061247)
chr2 (99-160)||(9065638-9065699)
chr2 (102-171)||(9321021-9321090)
chr2 (99-156)||(12018937-12018994)
chr2 (100-160)||(8573550-8573610)
chr2 (99-177)||(9291973-9292051)
chr2 (102-160)||(9328638-9328696)
chr2 (102-160)||(10347824-10347882)
chr2 (102-160)||(10353148-10353206)
chr2 (99-160)||(9284235-9284296)
chr2 (111-160)||(10335892-10335941)
chr2 (99-160)||(10371894-10371955)
chr2 (111-160)||(11987532-11987581)
chr2 (99-163)||(9274557-9274621)
chr2 (115-177)||(16269141-16269203)
chr2 (99-160)||(12006163-12006224)
chr2 (99-160)||(12012591-12012652)
chr2 (111-158)||(7115689-7115736)
chr2 (266-296)||(7612153-7612183)
chr2 (262-290)||(10336031-10336059)
[»] chr4 (4 HSPs)
chr4 (99-160)||(561258-561319)
chr4 (102-160)||(26574900-26574958)
chr4 (9-57)||(561174-561222)
chr4 (262-293)||(561427-561458)
[»] chr7 (5 HSPs)
chr7 (100-160)||(45237987-45238047)
chr7 (99-159)||(45230468-45230528)
chr7 (99-160)||(45243735-45243796)
chr7 (14-63)||(45243656-45243705)
chr7 (14-59)||(45237907-45237952)
[»] chr1 (7 HSPs)
chr1 (99-160)||(29443366-29443427)
chr1 (99-160)||(29423301-29423362)
chr1 (99-160)||(29453349-29453410)
chr1 (99-160)||(29467825-29467886)
chr1 (262-303)||(29423458-29423499)
chr1 (262-303)||(29453212-29453253)
chr1 (262-290)||(29467701-29467729)
[»] chr8 (1 HSPs)
chr8 (99-160)||(41966750-41966811)
[»] scaffold0667 (1 HSPs)
scaffold0667 (102-177)||(4510-4585)


Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 36224364 - 36224546
Alignment:
Q  9 tacttccaacagaactttacttctatcacttaaataacataaaggcttcaaagatattaatttttaaggtggatcgaaataccattcccacaaagtaaac 108  Q
    ||||||||||||||||||||||||||||||  |||||||| |||||||||||||||| |||||  |||||| ||||||||||||||||||||||||||||    
T  36224364 tacttccaacagaactttacttctatcactggaataacatgaaggcttcaaagatatcaatttaaaaggtgaatcgaaataccattcccacaaagtaaac 36224463  T
Q  109 aatttacaccaactatctctaaatccatattctttcatcacccaaacatcaaattttttagttccataacaactcacattaac 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  36224464 aatttacaccaactatctctaaatccatattctttcatcacccaaacatcaaatttattagttccataacaactcacagtaac 36224546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 188 - 303
Target Start/End: Original strand, 36225005 - 36225117
Alignment:
Q  188 taacacacacagtcatacaaagacagtttcccaaaagcggaacatatttaatctcgcttgtaactacttcagggtcaggaagaggaacctcattgaaaat 287  Q
    |||||| |||||||||||||||||| | ||||||||| | |||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||    
T  36225005 taacactcacagtcatacaaagacactatcccaaaag-gaaacatatttaatcttgcttgtaactacttcaggattaggaagaggaacctcattgaaaat 36225103  T
Q  288 ctcttgtgttatgtta 303  Q
    |||  |||||||||||    
T  36225104 ctc--gtgttatgtta 36225117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 9 - 303
Target Start/End: Original strand, 39427592 - 39427865
Alignment:
Q  9 tacttccaacagaactttacttctatcacttaaataacataaaggcttcaaagatattaatttttaaggtggatcgaaataccattccc--acaaa-gta 105  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||      ||||| || |||| |||||||||  ||||| |||    
T  39427592 tacttccaacagaactttacttctatcactggaataacataaaggcttcaaagacattaa------aggtgaattgaaacaccattcccctacaaaagta 39427685  T
Q  106 aacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaaattttttagttccataacaactcacattaacacacacagtcatac 205  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || |||||||||| ||||||            |||||| ||||    
T  39427686 aacaatttacaccaactatatctatatccatattctttcatcacccaaacatcaaacttattagttccattacaact------------cacagtaatac 39427773  T
Q  206 aaagacagtttcccaaaagcggaacatatttaatctcgcttgtaactacttcagggtcaggaagaggaacctcattgaaaatctcttgtgttatgtta 303  Q
    ||||||| ||||||||||||| |||||||||||||||||||||| ||| |      |||||||||||||||||||||||||||||||| |||||||||    
T  39427774 aaagacactttcccaaaagcgaaacatatttaatctcgcttgtagctatt------tcaggaagaggaacctcattgaaaatctcttgagttatgtta 39427865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 37462537 - 37462590
Alignment:
Q  111 tttacaccaactatctctaaatccatattctttcatcacccaaacatcaaattt 164  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37462537 tttacaccaactatctctagatccatattctttcatcacccaaacatcaaattt 37462590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 8579677 - 8579532
Alignment:
Q  9 tacttccaacagaactttacttctatcacttaaataacataaaggcttcaaagatattaatttttaaggtggatcgaaataccattcccacaaagtaaac 108  Q
    ||||||||||||||||||||||||||||||  ||||||| ||||||||||||||| | ||      ||||  || |||  || | |||   |||||||||    
T  8579677 tacttccaacagaactttacttctatcactagaataacacaaaggcttcaaagatctcaa------aggtttattgaagcacgaatcctcaaaagtaaac 8579584  T
Q  109 aatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  8579583 aatttacaccaactatctctaaatccatattttttcatcacccaaacctcaa 8579532  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 7611975 - 7612037
Alignment:
Q  99 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaaa 161  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  7611975 caaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaaa 7612037  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 9364664 - 9364725
Alignment:
Q  99 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  9364664 caaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaa 9364725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 17566185 - 17566128
Alignment:
Q  103 gtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  17566185 gtaaacaatttacaccaattatctctaaatccatattctttaatcacccaaacatcaa 17566128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 9061247 - 9061186
Alignment:
Q  99 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    ||||||||| | ||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  9061247 caaagtaaaaagtttacaccaactatctctagatccatagtctttcatcacccaaacatcaa 9061186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 9065699 - 9065638
Alignment:
Q  99 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    ||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  9065699 caaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaa 9065638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 9321021 - 9321090
Alignment:
Q  102 agtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaaattttttagtt 171  Q
    |||||| | ||||||||||||||||||| | |||||||||||||||||||||||||||| |||| |||||    
T  9321021 agtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaacatcaacttttgtagtt 9321090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 12018994 - 12018937
Alignment:
Q  99 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaaca 156  Q
    ||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||    
T  12018994 caaagtaaaaagtttacaccaactatctctacatccatattctttcatcacccaaaca 12018937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 8573610 - 8573550
Alignment:
Q  100 aaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    |||||||| | ||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  8573610 aaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaacatcaa 8573550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 9291973 - 9292051
Alignment:
Q  99 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaaattttttagttccataa 177  Q
    ||||||||| | ||||||||||||||||||| | ||||||| |||||||||||||||||||| |||  ||||| |||||    
T  9291973 caaagtaaaaagtttacaccaactatctctagaaccatattgtttcatcacccaaacatcaattttagtagtttcataa 9292051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 9328638 - 9328696
Alignment:
Q  102 agtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    |||||| | ||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  9328638 agtaaaaagtttacaccaactatctctatatccatattgtttcatcacccaaacatcaa 9328696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 10347824 - 10347882
Alignment:
Q  102 agtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    |||||| | ||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  10347824 agtaaaaagtttacaccaactatctctacatccatattctttcatgacccaaacatcaa 10347882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 10353148 - 10353206
Alignment:
Q  102 agtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    |||||| | |||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  10353148 agtaaaaagtttacaccaactctctctacatccatattctttcatcacccaaacatcaa 10353206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 9284296 - 9284235
Alignment:
Q  99 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    ||||||||| | ||||||||||||||||||| | ||||||||||||||||||||||| ||||    
T  9284296 caaagtaaaaattttacaccaactatctctagaaccatattctttcatcacccaaacgtcaa 9284235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 10335892 - 10335941
Alignment:
Q  111 tttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  10335892 tttacaccaactatctctacagccatattctttcatcacccaaacatcaa 10335941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 10371894 - 10371955
Alignment:
Q  99 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    ||||||||| | ||||||||||||||||||| | |||||||||||||||||||||| |||||    
T  10371894 caaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaatatcaa 10371955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 11987581 - 11987532
Alignment:
Q  111 tttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  11987581 tttacaccaactatctctacatccatattctttcatcacccaaatatcaa 11987532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 9274557 - 9274621
Alignment:
Q  99 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaaatt 163  Q
    ||||||||| | |||||||||||||||| || | ||||||||||||||||||||||| |||||||    
T  9274557 caaagtaaaaagtttacaccaactatctgtagaaccatattctttcatcacccaaacttcaaatt 9274621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 16269141 - 16269203
Alignment:
Q  115 caccaactatctctaaatccatattctttcatcacccaaacatcaaattttttagttccataa 177  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||| |||  ||||| |||||    
T  16269141 caccaactatctctatatccatactctttcatcacccaaacatcaattttagtagtttcataa 16269203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 12006224 - 12006163
Alignment:
Q  99 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    ||||||||| | |||||||||||||||| || | |||||||||||||||||||| |||||||    
T  12006224 caaagtaaaaagtttacaccaactatctttacaaccatattctttcatcacccatacatcaa 12006163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 12012652 - 12012591
Alignment:
Q  99 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    ||||||||| | |||||||||||||||| || | |||||||||||||||||| | |||||||    
T  12012652 caaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaa 12012591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 7115736 - 7115689
Alignment:
Q  111 tttacaccaactatctctaaatccatattctttcatcacccaaacatc 158  Q
    ||||||||| || |||||| ||||||||| ||||||||||||||||||    
T  7115736 tttacaccagctgtctctagatccatattgtttcatcacccaaacatc 7115689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 296
Target Start/End: Original strand, 7612153 - 7612183
Alignment:
Q  266 gaagaggaacctcattgaaaatctcttgtgt 296  Q
    |||||||||||||||||||||||||||||||    
T  7612153 gaagaggaacctcattgaaaatctcttgtgt 7612183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 290
Target Start/End: Original strand, 10336031 - 10336059
Alignment:
Q  262 tcaggaagaggaacctcattgaaaatctc 290  Q
    |||||||||||||||||||||||||||||    
T  10336031 tcaggaagaggaacctcattgaaaatctc 10336059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 561258 - 561319
Alignment:
Q  99 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||    
T  561258 caaagtaaacaatacacaccaactatctctaaatccatattctttcattacccaaacatcaa 561319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 26574900 - 26574958
Alignment:
Q  102 agtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    |||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26574900 agtaaaaagtttacaccaactatctctacatccatattctttcatcacccaaacatcaa 26574958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 561174 - 561222
Alignment:
Q  9 tacttccaacagaactttacttctatcacttaaataacataaaggcttc 57  Q
    |||||||||||||||||||||||||||||   |||||| ||||||||||    
T  561174 tacttccaacagaactttacttctatcaccagaataacctaaaggcttc 561222  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 293
Target Start/End: Original strand, 561427 - 561458
Alignment:
Q  262 tcaggaagaggaacctcattgaaaatctcttg 293  Q
    ||||||||||||||||||||||||||||||||    
T  561427 tcaggaagaggaacctcattgaaaatctcttg 561458  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 45237987 - 45238047
Alignment:
Q  100 aaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    |||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45237987 aaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaacatcaa 45238047  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 45230468 - 45230528
Alignment:
Q  99 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatca 159  Q
    ||||||||| | ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  45230468 caaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaacatca 45230528  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 45243735 - 45243796
Alignment:
Q  99 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    ||||||||| | |||||||||| |||||||| | ||||||||||||||||||||||||||||    
T  45243735 caaagtaaaaagtttacaccaaatatctctagaaccatattctttcatcacccaaacatcaa 45243796  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 45243656 - 45243705
Alignment:
Q  14 ccaacagaactttacttctatcacttaaataacataaaggcttcaaagat 63  Q
    |||||||||||||||||| ||||||  |||||||||||||| ||||||||    
T  45243656 ccaacagaactttacttcgatcactcgaataacataaaggcctcaaagat 45243705  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 45237907 - 45237952
Alignment:
Q  14 ccaacagaactttacttctatcacttaaataacataaaggcttcaa 59  Q
    |||||||||||||||||| ||| ||| |||||||||||||| ||||    
T  45237907 ccaacagaactttacttcgatcgcttgaataacataaaggcctcaa 45237952  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 29443427 - 29443366
Alignment:
Q  99 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    ||||||||| | ||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  29443427 caaagtaaaaagtttacaccagctatctctacatccatattctttcatcacccaaacatcaa 29443366  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 29423301 - 29423362
Alignment:
Q  99 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    ||||||||| | ||||||||| ||||||||| |||||||||||||||||| |||||||||||    
T  29423301 caaagtaaaaagtttacaccagctatctctacatccatattctttcatcagccaaacatcaa 29423362  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 29453410 - 29453349
Alignment:
Q  99 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    ||||||||| | || |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  29453410 caaagtaaaaagttcacaccagctatctctacatccatattctttcatcacccaaacatcaa 29453349  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 29467886 - 29467825
Alignment:
Q  99 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    ||||||||| | ||||| ||||||||||||| |||||||||||||||||| |||||||||||    
T  29467886 caaagtaaaaagtttacgccaactatctctacatccatattctttcatcaaccaaacatcaa 29467825  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 29423458 - 29423499
Alignment:
Q  262 tcaggaagaggaacctcattgaaaatctcttgtgttatgtta 303  Q
    ||||||| ||||||||||||||||||||| ||||||| ||||    
T  29423458 tcaggaaaaggaacctcattgaaaatctcatgtgttaggtta 29423499  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 29453253 - 29453212
Alignment:
Q  262 tcaggaagaggaacctcattgaaaatctcttgtgttatgtta 303  Q
    ||||||| ||||||||||||||||||||| ||||||| ||||    
T  29453253 tcaggaaaaggaacctcattgaaaatctcgtgtgttaggtta 29453212  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 290
Target Start/End: Complemental strand, 29467729 - 29467701
Alignment:
Q  262 tcaggaagaggaacctcattgaaaatctc 290  Q
    |||||||||||||||||||||||||||||    
T  29467729 tcaggaagaggaacctcattgaaaatctc 29467701  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 41966811 - 41966750
Alignment:
Q  99 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 160  Q
    ||||||||| | ||||||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  41966811 caaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaa 41966750  T

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Target: scaffold0667 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 4510 - 4585
Alignment:
Q  102 agtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaaattttttagttccataa 177  Q
    |||||| | |||||||||||||||| | |||||||||| |||||||||||||||||||| |||  ||||| |||||    
T  4510 agtaaaaagtttacaccaactatcttttaatccatattgtttcatcacccaaacatcaattttagtagtttcataa 4585  T

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