View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13744_low_12 (Length: 287)
Name: NF13744_low_12
Description: NF13744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13744_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 9166501 - 9166226
Alignment:
| Q |
1 |
taataggaaaaagactgctgatggatatcaaagatggatgatgaaagcagcaaataatggtcctgctgcatttggtgaacattggaagttagatgacaaa |
100 |
Q |
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| T |
9166501 |
taataggaaaaagactgctgatggatatcaaagatggatgatgaaagcagcaaataatggtcctgctgcatttggtgaacattggaagttagatgacaaa |
9166402 |
T |
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| Q |
101 |
gaaagcaacgcaggtggtgggagaagccgtnnnnnnnctggtgatga------------tccttcctctgataaaggagaggaagatgaagatgaggaag |
188 |
Q |
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| T |
9166401 |
gaaagcaacgcaggtggtgggagaagccgtaaaaaaactggtgatgatgatgatgaaggtccttcctctgataaaggagaggaagatgaagatgaggaag |
9166302 |
T |
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| Q |
189 |
tagataagaagaacagacatggactgaatnnnnnnngtggctatgatgacgatgaaggtccaaggggaggggacct |
264 |
Q |
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| T |
9166301 |
tagataagaagaatagacatggactgaataaaaaaagtggctatgatgacgatgaaggtccaaggggaggggacct |
9166226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 2 - 206
Target Start/End: Complemental strand, 9155083 - 9154867
Alignment:
| Q |
2 |
aataggaaaaagactgctgatggatatcaaagatggatgatgaaagcagcaaataatggtcctgctgcatttggtgaacattggaagttagatgacaaag |
101 |
Q |
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| T |
9155083 |
aataggaaaaaaactgctgatggatatcaaagatggatgatgaaagcagcaaacaatgggcctgctgcatttggtgaacatgggaagttagatgacaagg |
9154984 |
T |
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| Q |
102 |
aaagcaacgcaggtggtgggagaagccgtnnnnnnnctggtgatga------------tccttcctctgataaaggagaggaagatgaagatgaggaagt |
189 |
Q |
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| T |
9154983 |
agagcaacgcagggggtgggagaggccgtaaaaagactggtgatgatgaagatgaaggtccttcctctgataaaggagaggaagatgaagacgaggaagt |
9154884 |
T |
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| Q |
190 |
agataagaagaacagac |
206 |
Q |
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| T |
9154883 |
agataggaagaaaagac |
9154867 |
T |
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